Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,183,895 |
(G)7→8 |
intergenic (‑79/‑42) |
yohL ← / → yohM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,183,888 | 1 | . | G | 91.6%
| 380.8
/ 25.4
| 119 | intergenic (‑72/‑49) | yohL/yohM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (2/8); new base G (82/27); total (84/35) |
| Fisher's exact test for biased strand distribution p-value = 8.29e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 |
Only 100 of 165 total aligned reads displayed.
TATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGC > NC_000913/2183795‑2183974
|
tATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTGC‑t < 2:8859688/94‑1 (MQ=255)
tATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑t < 2:9570439/94‑1 (MQ=255)
tATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑t < 2:358995/94‑1 (MQ=255)
aTCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g > 2:8923533/1‑94 (MQ=255)
tCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑g < 2:5979640/94‑1 (MQ=255)
tCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑g < 1:9998746/94‑1 (MQ=255)
tCACGGATGGAATGAGACATGGCAAGACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑g < 1:6999085/94‑1 (MQ=255)
aCGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑gg‑g < 1:7703674/94‑1 (MQ=255)
cGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑gg‑g‑g < 2:9857441/94‑1 (MQ=255)
cGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑gg‑g‑g > 1:4251902/1‑94 (MQ=255)
cGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑gg‑g‑g > 1:9613077/1‑94 (MQ=255)
ggATTGTATGAGACATGGCAACATCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑gg‑g‑gg < 2:4822665/94‑1 (MQ=255)
ggATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑gg‑g‑gg < 2:5524523/94‑1 (MQ=255)
tGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑gg‑g‑ggggag > 2:7433379/1‑91 (MQ=255)
gTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑g‑gg‑g‑ggggagt > 2:2442057/1‑90 (MQ=255)
aTGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTAGTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAg < 1:2608132/94‑1 (MQ=255)
aTGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAg > 2:4168137/1‑94 (MQ=255)
aTGAGACATGGCAACACCTGGTTAAAAAGAATATGAAAAATCATAGCACTATGAATCTACTGGGGGTTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAg < 2:3660295/94‑1 (MQ=255)
aTGAGACATGGCAACACCTGGTAAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑GG‑G‑GG‑G‑GGG‑AGTAg < 1:1644047/94‑1 (MQ=255)
gaCATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATc > 1:7901617/1‑94 (MQ=255)
aCATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCa > 2:2319839/1‑94 (MQ=255)
cATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAg > 1:1912584/1‑94 (MQ=255)
aTGGCAAGACCGGGTAAACAAGAATATGAAAAATCATAGCACTATGAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGa < 1:8402181/94‑1 (MQ=255)
aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGa > 1:4035450/1‑94 (MQ=255)
aTGGCAACACATGGTAAACAAGAAGATGAAAAATCATAGCACTATTAATCTACGGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGa < 1:492040/94‑1 (MQ=255)
tGGCAACACCTGGTTAAGAAGAATATGAAAAATCATAGCACTATTAAGCTGCTGGGGGGTAGTATCGGGTAC‑GG‑G‑GG‑G‑GGG‑AGTAGAATCAGAt < 2:3518140/94‑1 (MQ=255)
gCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTGTTAATCTGCGGGGGGGTAGTATCAGGTGG‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTg < 2:6087359/94‑1 (MQ=255)
cAACACCGGGATAACAAGAATATTAAAGAACATAGCCATATGAATGTACTGGGGGGTATTAGCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGc < 2:1010529/94‑1 (MQ=255)
gacCTTGTTAACAATAATATTAAAAATCATAGCACTATTGATCTACGGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGa < 2:9809053/93‑1 (MQ=255)
cacCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGaa > 1:7408175/1‑94 (MQ=255)
acCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑TGTAGAATCAGATTGcccga > 1:6576849/1‑91 (MQ=255)
acCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGaa > 2:292065/1‑94 (MQ=255)
gcTGGTTAACAAGAATATGACAAATCATAGCACTATTAATCTAGGGGGGGGTAGTATCAGTTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAAt < 2:1601045/93‑1 (MQ=255)
ccTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAAt > 2:7430736/1‑94 (MQ=255)
tGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTCC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTa > 2:10180354/1‑94 (MQ=255)
tGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTa > 2:1945578/1‑94 (MQ=255)
ttAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGGAGAATCAGATTGCCGAATTAATa > 1:9076117/1‑94 (MQ=255)
tAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATAc < 2:5674402/94‑1 (MQ=255)
tAAAAAGAATAATAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑G‑GG‑G‑GGGAAGTAGAATCAGATTGCCGAATTAATAc < 2:10224278/94‑1 (MQ=255)
aaaaaGAATAAGAAAAATCATAGCCGTATTAATCGACTGGGGGGTAGTATCACGTACGG‑‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACt < 2:271236/91‑1 (MQ=255)
aCAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTa > 2:654588/1‑94 (MQ=255)
aCAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTa > 1:915473/1‑94 (MQ=255)
aCAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTa > 1:6757556/1‑94 (MQ=255)
cAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTaa > 2:4371434/1‑94 (MQ=255)
cAAGAATATGAAAAATCATACCACTATTACTCTTCTGGGGGGTAGTATCAGTTAC‑T‑‑G‑GGCG‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTaa < 2:8723950/94‑1 (MQ=255)
aaGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAg > 2:7516382/1‑94 (MQ=255)
aaGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAg > 2:3110780/1‑94 (MQ=255)
aaGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAg > 2:4446004/1‑94 (MQ=255)
aGAATATTAAAAATCATAGCACTATTACTCTACTGGGGGGTAGTATCAGGTGC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGa < 2:1387337/94‑1 (MQ=255)
gAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGG‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGa > 2:9494455/1‑94 (MQ=255)
aagatGAAAAGGGATAGCAGTATGAAGCGGGTGCGGGGTAGTATCAGGGACGG‑‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAat < 2:6470604/91‑1 (MQ=255)
aaTATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAat > 1:5093452/1‑94 (MQ=255)
atatGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAatt > 2:1850160/1‑94 (MQ=255)
atatAAAAAATCATAGCTCTATTAATCGTCTGGGGGTTAGTATCCGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAatt < 2:8870511/94‑1 (MQ=255)
ataaaaaaTGATCGCACAATTAATCGACTGGGGGGTAGTAGCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAattat < 2:7190260/91‑1 (MQ=255)
atGAAAAAACATAGAACTATTAATCTACTGGGGGGTAGTATGGGGTCC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAattat < 1:5375627/94‑1 (MQ=255)
tGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAattatt > 1:2873926/1‑94 (MQ=255)
aaaaaTCATAGCACTTTTAATCTACTGGGGCGTAGTATCAGGTGCGG‑‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATtattat < 2:10336624/94‑1 (MQ=255)
aaaaaTCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATtattat > 2:10479327/1‑94 (MQ=255)
aaaaaTCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATtattat > 1:5317751/1‑94 (MQ=255)
agaTCATAGCAGTATGAGTGTGCTGGGGGGTAGGAGCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCa < 1:5162460/92‑1 (MQ=255)
aaaTCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCa > 2:9214580/1‑94 (MQ=255)
aaaTCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCa > 1:2868132/1‑94 (MQ=255)
aaTCATCGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAt > 1:6440881/1‑94 (MQ=255)
aaTCATAACATTATTAATCTGCTGGGGGTCGGTATCAGGTAG‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAt < 1:9142840/94‑1 (MQ=255)
tCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGa > 1:4472083/1‑94 (MQ=255)
tAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCg > 1:8319115/1‑94 (MQ=255)
gCACTGTTAATCTAGTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGaa < 1:2079829/94‑1 (MQ=255)
cACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑GGGAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAt > 1:3402158/1‑94 (MQ=255)
cACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAt > 1:1847939/1‑94 (MQ=255)
cACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAt > 1:1824496/1‑94 (MQ=255)
cACGATTATGCTAGTGGGGGGTAGTATCAGGTAC‑T‑‑G‑GG‑GTGGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAt < 1:1103536/94‑1 (MQ=255)
aCTATTAATCTACTGGGGGGTAGTATCAGGTGC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAtt > 1:3403903/1‑94 (MQ=255)
tATTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTa > 1:4641059/1‑94 (MQ=255)
aTTAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTAc > 2:8836704/1‑94 (MQ=255)
ttAATCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACa > 1:9074126/1‑94 (MQ=255)
aaTCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAc > 2:5217778/1‑94 (MQ=255)
aaTCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAc > 1:861580/1‑94 (MQ=255)
aaTCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAc > 1:10010820/1‑94 (MQ=255)
tCTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActc > 1:1450334/1‑94 (MQ=255)
cTACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActct > 1:3263714/1‑94 (MQ=255)
tACTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACtctt > 2:8420053/1‑94 (MQ=255)
aCTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACtcttc > 1:7008125/1‑94 (MQ=255)
aCTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGGAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAAtcttc > 1:5605238/1‑94 (MQ=255)
cTGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTAAAACtcttct > 2:5305721/1‑94 (MQ=255)
atGGGGGGTAGTATCAGGTAC‑T‑‑G‑GG‑GTGGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACtcttct < 2:9174764/93‑1 (MQ=255)
tGGGGGGTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTcttctt > 2:1329629/1‑94 (MQ=255)
ggggggTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCttcttc > 1:7059682/1‑94 (MQ=255)
ggggTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAg > 1:386979/1‑94 (MQ=255)
ggggAGTAACAGGTGC‑T‑‑G‑GGTG‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGc < 1:398591/94‑1 (MQ=255)
gggTAGTATCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGc > 2:2501032/1‑94 (MQ=255)
gtagtaTCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTTTTCAGcca > 1:2163989/1‑92 (MQ=255)
agtaTCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAgg > 2:1171830/1‑94 (MQ=255)
gtaTCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGa > 2:10285871/1‑94 (MQ=255)
taTCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGCTTGCCGAATTAATACTAAGAATTATTATCATGACCGACTTTACAACTCTTCTTCAGGCAGGaa > 2:6929402/1‑94 (MQ=255)
taTCAGGTAC‑T‑‑GTGG‑G‑TGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGaa < 1:16650/94‑1 (MQ=255)
aTCAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGaaa > 2:7632879/1‑94 (MQ=255)
aTCACGTAC‑T‑‑G‑GG‑GAGGG‑AGGAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGaaa < 2:5444845/94‑1 (MQ=255)
cAGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACg > 2:6243257/1‑94 (MQ=255)
aGGTAC‑TG‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGc > 2:5098654/1‑94 (MQ=255)
|
TATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑‑G‑GG‑G‑GGG‑AGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGC > NC_000913/2183795‑2183974
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATC > NC_000913/2183803‑2183987
|
ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑G‑GGG > SRR4302545.4484164/1‑94 (MQ=60)
ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑G‑GGGG > SRR4302545.3242331/1‑94 (MQ=60)
GTATGAGACATGGCAACAACTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGT > SRR4302545.10190747/1‑94 (MQ=60)
TATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑G‑GGGggaga > SRR4302545.10779206/1‑89 (MQ=60)
ATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTAGT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAG < SRR4302545.2670919/94‑1 (MQ=60)
ATGAGACATGGCAACACCTGGTAAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑CGG‑G‑GG‑G‑GGGAGTAG < SRR4302545.1683025/94‑1 (MQ=60)
AGGAGACATGCAAACACATGATTAAAAAGAAAATGAAAAATCATAGCACTATTAATCGACG‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAG < SRR4302545.516570/94‑1 (MQ=48)
TGAGACATGGAAACCTCTGGTTAAAAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGA < SRR4302545.8645868/94‑1 (MQ=60)
GACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTCATCTACT‑GGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑G‑GGGggggagaaaa > SRR4302545.8896162/1‑84 (MQ=60)
GACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATC > SRR4302545.8125878/1‑94 (MQ=60)
GACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑G‑GGGgagcagaata > SRR4302545.8125877/1‑84 (MQ=60)
CATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAG > SRR4302545.1959857/1‑94 (MQ=60)
CATGACAACACCTGGAAAACAAGAATATGAAAAATCATAGCACTATTAATCTCCT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAG < SRR4302545.9509715/94‑1 (MQ=60)
ATGGCAAGACCGGGTAAACAAGAATATGAAAAATCATAGCACTATGAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGA < SRR4302545.8645323/94‑1 (MQ=60)
ATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGA > SRR4302545.4136490/1‑94 (MQ=60)
ATGGCAACACATGGTAAACAAGAAGATGAAAAATCATAGCACTATTAATCTACG‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGA < SRR4302545.503024/94‑1 (MQ=60)
ggcaaaaaatggtgaacaagaataggaaatatcagataatcatgaattgACT‑GGGGGGGAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATT < SRR4302545.8009090/45‑1 (MQ=60)
GGCCACAACTGTTTAACAATAATATGAAATATCATAGTAGTATTAATCTGCT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATT < SRR4302545.1990777/94‑1 (MQ=53)
CACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑G‑GGGAGTAGAATCAGATTGCCGAA > SRR4302545.7617490/1‑94 (MQ=60)
ACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGTGTAGAATCAGATTGCCcga > SRR4302545.6756842/1‑91 (MQ=60)
CTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATT > SRR4302545.8696498/1‑94 (MQ=60)
GTTAACAAGAATATGAAAAATCAGACCAGTATTAAGCTGCT‑GGGGGGTAGTATCAGGGA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAAT < SRR4302545.342490/94‑1 (MQ=60)
GTTAACAAGAATATAAAAAATCATGTCACTATTAAGCTACT‑GGGGGGTAGTATCGGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAAT < SRR4302545.266418/94‑1 (MQ=60)
ataaaaagaataaaaaacATCATAGCTCTATTATTCTAGC‑GGGGGGTAGTATCGGGTA‑CGT‑G‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATA < SRR4302545.10194983/76‑1 (MQ=48)
TTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGGAGAATCAGATTGCCGAATTAATA > SRR4302545.9341485/1‑94 (MQ=60)
taaaaaaaagaagaaaaatgttagctattggaggcgtCT‑GGGGGGTAGTATCGGGGA‑C‑G‑G‑GGTG‑GGGAGTAGAATCAGATTGCCGAATTAATAC < SRR4302545.3974871/57‑1 (MQ=36)
agaagaaaatgaaaaagaatagacgTATTAATCTACT‑GGGGGGTGGTCTCGGGGG‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTA < SRR4302545.4050790/69‑1 (MQ=34)
ACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTA > SRR4302545.6942840/1‑94 (MQ=60)
ACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTA > SRR4302545.936009/1‑94 (MQ=60)
CAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAA > SRR4302545.7207265/1‑94 (MQ=60)
aaaaaaaatatgaagattcttagacgtttaacactacgggcgtttattaacagttactgG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACT < SRR4302545.4714903/35‑1 (MQ=60)
AATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAAT > SRR4302545.5223406/1‑94 (MQ=60)
ATATGAAAAATCATAGTATTATTACTCTACT‑GGGGGGTAGTATCAGGTG‑CGG‑G‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATT < SRR4302545.5592196/94‑1 (MQ=60)
AGATGAAAAATCGTAGCACGATTAATCTGCT‑GGGGGGTAGTATCAGGCA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATT < SRR4302545.1914926/94‑1 (MQ=60)
aaattagaaaaatcatagcactagtaacgtactggtgtgtggtatcgggtacggG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAA < SRR4302545.7821835/40‑1 (MQ=60)
TATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTA > SRR4302545.498383/1‑94 (MQ=60)
TATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTA > SRR4302545.7575536/1‑94 (MQ=60)
ATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTAT > SRR4302545.8146142/1‑94 (MQ=60)
ATGAAAAAACATAGAACTATTAATCTACT‑GGGGGGTAGTATGGGGTC‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTAT < SRR4302545.5515462/94‑1 (MQ=60)
TGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATT > SRR4302545.2943435/1‑94 (MQ=60)
TGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATT > SRR4302545.5974647/1‑94 (MQ=60)
aatgaaaaatcagacaactatgaaactagtgggggaatctatcgggtcccaG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTA < SRR4302545.9397217/43‑1 (MQ=60)
AAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTAT > SRR4302545.5455675/1‑94 (MQ=60)
aaaaaactacgatctatgcattcactgtggtGTAGTATCTGCTA‑C‑T‑G‑GGAG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTAT < SRR4302545.10060281/63‑1 (MQ=60)
AAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATC > SRR4302545.7045427/1‑94 (MQ=60)
agatcatagcagtatgagtgtgCT‑GGGGGGTAGGAGCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCA < SRR4302545.5295224/72‑1 (MQ=60)
AAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCA > SRR4302545.2937479/1‑94 (MQ=60)
AATCATCGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAT > SRR4302545.6616976/1‑94 (MQ=60)
AATCATAACATTATTAATCTGCT‑GGGGGTCGGTATCAGGTA‑G‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAT < SRR4302545.9411297/94‑1 (MQ=57)
TCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGA > SRR4302545.4586228/1‑94 (MQ=60)
TCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑G‑GGGGGGAGAAACAAATTGCCGAAATAATAacaaaaaatattttgattgc > SRR4302545.7217381/1‑74 (MQ=60)
TCATAGCACTATTAATCTACT‑GGGGGG‑AGTATCAGGGACC‑T‑G‑GG‑G‑GGGAGGAAAATCAGATTTCCGAATTAATACTAAagaattttatccttac > SRR4302545.4586227/1‑78 (MQ=47)
gtcgtagtgccagaactctgccggggggtagtctgtggtacggG‑GG‑G‑GTGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATG < SRR4302545.7750767/51‑1 (MQ=60)
TAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCG > SRR4302545.8560192/1‑94 (MQ=60)
catagacgtagtagtcgactgcgtgagagtgtctggtagtgG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAC < SRR4302545.4293226/53‑1 (MQ=60)
GCACTGTTAATCTAGT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAA < SRR4302545.2131021/94‑1 (MQ=60)
cacgattatgctagT‑GGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑GTGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT < SRR4302545.1127544/80‑1 (MQ=60)
aggcagtactcaactgtgagggggaggattgaggtactgG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCG < SRR4302545.9523060/55‑1 (MQ=60)
CACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGGGGAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT > SRR4302545.3485119/1‑94 (MQ=60)
CACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT > SRR4302545.1893014/1‑94 (MQ=60)
CACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT > SRR4302545.1868752/1‑94 (MQ=60)
tctagcactattaatccgctgggggtgagtctcgggtcatgggggcGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAC < SRR4302545.6791111/48‑1 (MQ=60)
ACTATTAATCTACT‑GGGGGGTAGTATCAGGTG‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATT > SRR4302545.3486910/1‑94 (MQ=60)
gcaataatattttgcgggggggtattatcaggtgttgG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAA < SRR4302545.8301745/57‑1 (MQ=60)
TATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTA > SRR4302545.4759629/1‑94 (MQ=60)
GATTAATCTACT‑GGGAGGTAGTATAAGGTG‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTA < SRR4302545.1354586/94‑1 (MQ=60)
ctactttttatttagtgtggggtagtagcgtgtgctgggggtGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAA < SRR4302545.531672/52‑1 (MQ=60)
TTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACA > SRR4302545.9339407/1‑94 (MQ=60)
TAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAA > SRR4302545.9377345/1‑94 (MQ=60)
AATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAC > SRR4302545.10307574/1‑94 (MQ=60)
AATCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAC > SRR4302545.880906/1‑94 (MQ=60)
tgaatttggtgtgtgggaggatgaggtactgG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACA < SRR4302545.262765/63‑1 (MQ=60)
TCTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTC > SRR4302545.1483453/1‑94 (MQ=60)
taatctagtgggggatactatcgggtcatggtG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAA < SRR4302545.4202022/62‑1 (MQ=60)
CTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCT < SRR4302545.1811617/94‑1 (MQ=60)
CTACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCT > SRR4302545.3343755/1‑94 (MQ=60)
ctgcgGGGGGGTAGTATGAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCT < SRR4302545.1237648/89‑1 (MQ=60)
ACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTC > SRR4302545.7201487/1‑94 (MQ=60)
ACT‑GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGGAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAATCTTC > SRR4302545.5753994/1‑94 (MQ=60)
GGGGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTC > SRR4302545.7254869/1‑94 (MQ=60)
tacctcggtggtttggggggccgtggaggaaGAGTAGAATCAGATGGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTT < SRR4302545.2055241/63‑1 (MQ=60)
ggtggggtagtatcggtgacggG‑GG‑G‑GTGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTT < SRR4302545.5232807/72‑1 (MQ=60)
GGGGTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAG > SRR4302545.395593/1‑94 (MQ=60)
GGGGAGTAACAGGTG‑C‑T‑G‑GGTG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGC < SRR4302545.407462/94‑1 (MQ=60)
gagttggtagcagttactgG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAG < SRR4302545.145544/75‑1 (MQ=60)
GTAGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTTTTCAGCCA > SRR4302545.2216911/1‑94 (MQ=60)
AGTATCGGGTG‑C‑T‑G‑GG‑GAGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGG < SRR4302545.1700958/94‑1 (MQ=60)
AGTATCAGGTA‑C‑TGG‑GG‑G‑GGGAGTAAAATCAGATTGCCGAATTAATACTAAGAATTATTATAATGACCAAATTTACAACTCTTCTTCAGCAAGA > SRR4302545.9126646/1‑94 (MQ=60)
TATCAGGTA‑C‑T‑GTGG‑G‑TGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAA < SRR4302545.17076/94‑1 (MQ=60)
CAGGTA‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACG > SRR4302545.9192410/1‑94 (MQ=60)
agaggtcctgG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAC < SRR4302545.5416250/84‑1 (MQ=60)
aatcgtgataaaggagggaGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGA < SRR4302545.5110359/75‑1 (MQ=60)
cagcaactgaggcgaGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACG < SRR4302545.8121448/79‑1 (MQ=60)
A‑C‑TGG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGG > SRR4302545.1369773/1‑94 (MQ=60)
ctgG‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGT > SRR4302545.4494399/4‑94 (MQ=60)
G‑G‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTC > SRR4302545.6093449/1‑94 (MQ=60)
ccgcgcgggaGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGG < SRR4302545.2659687/84‑1 (MQ=60)
G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCA > SRR4302545.5388121/1‑94 (MQ=60)
GGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATC < SRR4302545.4136311/94‑1 (MQ=60)
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ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTA‑C‑T‑G‑GG‑G‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATC > NC_000913/2183803‑2183987
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
