Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,563,970 |
A→G |
V312A (GTG→GCG) |
b2451 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,563,970 | 0 | A | G | 99.1%
| 775.5
/ ‑3.1
| 231 | V312A (GTG→GCG) | b2451 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (115/114); total (117/114) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.65e-01 |
Only 100 of 242 total aligned reads displayed.
CGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCACCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCAA > NC_000913/2563879‑2564060
|
cGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGcc < 1:9301846/94‑1 (MQ=255)
cGCCACCGGCAAATTGCGCAGCGGCAGGTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGGATGCGCGCCCGCGCCAATCGcc < 2:8021035/94‑1 (MQ=255)
gCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCg < 2:2700179/94‑1 (MQ=255)
tcACCGGCAAATTTCGCAGCGGCAGTTGTACGCCCTCATGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCgg > 1:9375562/2‑93 (MQ=255)
cACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTg < 1:5082733/94‑1 (MQ=255)
ggCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGgcgc > 1:393354/1‑94 (MQ=255)
ggCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCAAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGgcgc < 1:10487417/94‑1 (MQ=255)
gCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCTCCCGCGCCAATCGCCGTGgcgcg > 1:7559819/1‑94 (MQ=255)
gCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGgcgcg > 2:3739106/1‑94 (MQ=255)
cAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGgcgcgc > 2:4033874/1‑94 (MQ=255)
aaaTTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCa > 1:7958214/1‑94 (MQ=255)
aaaTTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCa > 2:5891287/1‑94 (MQ=255)
aaaTTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCa > 2:4220833/1‑94 (MQ=255)
aaTTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCAc < 2:7234161/94‑1 (MQ=255)
aaTTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCAc < 1:3381167/94‑1 (MQ=255)
aTTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACg > 1:6424695/1‑94 (MQ=255)
aTTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACg < 1:2252692/94‑1 (MQ=255)
cgcAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGttt < 2:4699147/94‑1 (MQ=255)
cgcAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGttt > 2:2757539/1‑94 (MQ=255)
cAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTgc > 2:2928863/1‑94 (MQ=255)
cAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTgc > 2:5293768/1‑94 (MQ=255)
cAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGGTTgc > 1:2039837/1‑94 (MQ=255)
gCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTgcgc > 1:5631691/1‑94 (MQ=255)
gCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTgcgc < 2:1132717/94‑1 (MQ=255)
cGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGcc < 2:5110460/94‑1 (MQ=255)
cGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGcc > 2:8560983/1‑94 (MQ=255)
cGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGcc < 2:7342408/94‑1 (MQ=255)
ggCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCACCGTGGCGCGCACGGTTTGCGCCg > 2:4390572/1‑94 (MQ=255)
gCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCgg > 2:2612164/1‑94 (MQ=255)
cAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGa < 2:1236533/94‑1 (MQ=255)
aGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTTCGCCGGaa > 2:8806679/1‑94 (MQ=255)
aGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGaa < 2:8480294/94‑1 (MQ=255)
tGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACt > 2:834897/1‑94 (MQ=255)
gTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTg > 2:4743900/1‑94 (MQ=255)
cGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGATAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTAc > 2:1613352/1‑94 (MQ=255)
cGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTAc > 1:8890915/1‑94 (MQ=255)
cGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTAc < 2:1479261/94‑1 (MQ=255)
gCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACg > 2:2167193/1‑94 (MQ=255)
gCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACg < 2:6696238/94‑1 (MQ=255)
gCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCATGGCGCGCACGGTTTGCGCCGGAAACTGTACg > 1:3236598/1‑94 (MQ=255)
cccTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGt > 1:1483344/1‑94 (MQ=255)
cccTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGt < 1:10224017/94‑1 (MQ=255)
cccTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGt < 1:4389164/94‑1 (MQ=255)
ctaaaGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTc < 1:4088482/91‑1 (MQ=255)
tCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCa < 1:156939/94‑1 (MQ=255)
tCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCa < 2:6862118/94‑1 (MQ=255)
cAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCAt > 1:7820309/1‑94 (MQ=255)
gCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCAtctc < 2:9531520/94‑1 (MQ=255)
aGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACg < 1:10368105/94‑1 (MQ=255)
aGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACg > 1:9951874/1‑94 (MQ=255)
aGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACg > 2:6823636/1‑94 (MQ=255)
aGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACg > 2:5016722/1‑94 (MQ=255)
aGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACg > 2:3092862/1‑94 (MQ=255)
gATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGc < 2:7075289/94‑1 (MQ=255)
aTTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCa > 1:5354215/1‑94 (MQ=255)
tgtgCTGCCAGAGAGCGAAAGGGTATGCGCGCCTGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAgg < 2:10184498/94‑1 (MQ=255)
tgtgCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAgg > 1:4412421/1‑94 (MQ=255)
tgtgCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAgg < 2:9141369/94‑1 (MQ=255)
tgtgCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAgg < 2:5211461/94‑1 (MQ=255)
tgtgCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAgg < 2:4123881/94‑1 (MQ=255)
tgtgCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGGTCATCTCACGCAgg > 1:6761070/1‑94 (MQ=255)
gtgCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGgc < 1:1009867/94‑1 (MQ=255)
gtgCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGgc < 1:8527781/94‑1 (MQ=255)
ctgcCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGcgcg > 1:8437887/1‑94 (MQ=255)
ctgcCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGcgcg > 1:2453138/1‑94 (MQ=255)
gcCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGa > 1:2607946/1‑94 (MQ=255)
ccAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGag > 2:6565610/1‑93 (MQ=255)
agagagCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATgg > 1:9762639/1‑94 (MQ=255)
agagagCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATgg > 1:3086184/1‑94 (MQ=255)
agagagCGAAAGGGGATCCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGGTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATgg < 2:10164994/94‑1 (MQ=255)
agagCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTc > 1:4279403/1‑94 (MQ=255)
ggAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGc < 1:6642523/93‑1 (MQ=255)
gAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCa < 2:4529130/94‑1 (MQ=255)
gAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCa > 1:9707458/1‑94 (MQ=255)
gAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCa > 1:7093423/1‑94 (MQ=255)
aaaGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGCCATGCAg > 1:3783959/1‑94 (MQ=255)
aaGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAgc < 2:2565252/94‑1 (MQ=255)
aGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAgcg > 2:205521/1‑94 (MQ=255)
aGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAgcg > 2:9435252/1‑94 (MQ=255)
gTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAg < 1:117787/94‑1 (MQ=255)
aTGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGtt < 2:10505641/94‑1 (MQ=255)
tGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTg > 1:6248901/1‑94 (MQ=255)
tGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTg < 2:6983122/94‑1 (MQ=255)
gcgcgcCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGc > 1:1892120/1‑94 (MQ=255)
cgcgcccgcgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGcc < 1:4660751/94‑1 (MQ=255)
cgcgcccgcgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGcc < 1:8774453/94‑1 (MQ=255)
gcgcccgcgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCca > 2:7756884/1‑94 (MQ=255)
gcgcccgcgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCca > 2:3169017/1‑94 (MQ=255)
cgcccgcgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCcag < 2:5250162/94‑1 (MQ=255)
gcccgcgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCcagc > 1:5666862/1‑94 (MQ=255)
ccgcgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCcagcag < 2:2356339/94‑1 (MQ=255)
gcgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCg < 1:4775163/94‑1 (MQ=255)
gcgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCg < 1:5242412/94‑1 (MQ=255)
cgccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCgg < 1:595836/94‑1 (MQ=255)
ccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGc > 2:6395201/1‑94 (MQ=255)
ccAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGc > 2:3782997/1‑94 (MQ=255)
cAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGcc > 1:1385148/1‑94 (MQ=255)
aaTCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCa > 1:7363410/1‑94 (MQ=255)
aTCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCaa < 2:6225907/94‑1 (MQ=255)
aTCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCaa > 2:578739/1‑94 (MQ=255)
|
CGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCACCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCAA > NC_000913/2563879‑2564060
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCACCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCAATAT > NC_000913/2563877‑2564063
|
ATCGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCG < SRR4302545.10200852/94‑1 (MQ=60)
ATCGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCG < SRR4302545.9285445/94‑1 (MQ=60)
ATCGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCG < SRR4302545.9285444/94‑1 (MQ=60)
ATCGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCG > SRR4302545.6593799/1‑94 (MQ=60)
CGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGGGAAAGGGTATGCGCGCCCGCGCCAATCGCC < SRR4302545.8299052/94‑1 (MQ=60)
CGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCC < SRR4302545.9574552/94‑1 (MQ=60)
GCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCG > SRR4302545.7601148/1‑94 (MQ=60)
CCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGT < SRR4302545.9176067/94‑1 (MQ=60)
CCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGT < SRR4302545.5494634/94‑1 (MQ=60)
CACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTG < SRR4302545.5212289/94‑1 (MQ=60)
ACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGG < SRR4302545.5796849/94‑1 (MQ=60)
CCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGC < SRR4302545.6895005/94‑1 (MQ=60)
CCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGC > SRR4302545.1063177/1‑94 (MQ=60)
CGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCG < SRR4302545.10180420/94‑1 (MQ=60)
GGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGC > SRR4302545.402107/1‑94 (MQ=60)
GGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCAAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGC < SRR4302545.10796570/94‑1 (MQ=60)
GCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCTCCCGCGCCAATCGCCGTGGCGCG > SRR4302545.7773504/1‑94 (MQ=60)
GCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCG < SRR4302545.8155788/94‑1 (MQ=60)
AAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCA > SRR4302545.8184402/1‑94 (MQ=60)
AAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCA > SRR4302545.7105133/1‑94 (MQ=60)
AATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCAC > SRR4302545.3612224/1‑94 (MQ=60)
AATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCAC < SRR4302545.3463571/94‑1 (MQ=60)
ATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACG > SRR4302545.6600324/1‑94 (MQ=60)
ATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACG < SRR4302545.5422132/94‑1 (MQ=60)
ATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACG < SRR4302545.2307553/94‑1 (MQ=60)
ctgctgaaccgctcttccgatctctgatctCAGATTGTGCTGCCAGAGAGCGAAAGGGGATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGG > SRR4302545.1667999/31‑94 (MQ=60)
TGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGT < SRR4302545.8697891/94‑1 (MQ=60)
CGCGGCGGCAGTGGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTT < SRR4302545.3965088/94‑1 (MQ=60)
CGCAGCGGAAGTGATACGCCCTCAAGCCAGATTGTCCTGCCAGAGACGGAAAGGGTATGCGCGCCCGGGCGAATCGCCGTGGCGCGCACGGTTT < SRR4302545.94299/94‑1 (MQ=55)
CACAGCGGCAGTTGTACGCCCTAAGACCGGTTTGTGCTGCCGGAGAGCGAAAGGGACTGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGATT < SRR4302545.9996587/94‑1 (MQ=42)
CAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGGTTGC > SRR4302545.2090143/1‑94 (MQ=60)
AGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCG < SRR4302545.401375/94‑1 (MQ=60)
GCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGC > SRR4302545.5781485/1‑94 (MQ=60)
TGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCC > SRR4302545.2097050/1‑94 (MQ=60)
GGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCG > SRR4302545.8870436/1‑94 (MQ=60)
GGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCG > SRR4302545.7934991/1‑94 (MQ=60)
GCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGG > SRR4302545.6075519/1‑94 (MQ=60)
GCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGG < SRR4302545.9075882/94‑1 (MQ=60)
GCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGG < SRR4302545.2406355/94‑1 (MQ=60)
CAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGA > SRR4302545.10921697/1‑94 (MQ=60)
AGTTGTACGCGCTCAAGCCAGATTGTGCTGCCAGAGGGCGGAAGGGTATGCTCGCCCGCGCCAATCGCCGTGCCGCGCATTGTTTGCGCCGGAA > SRR4302545.1171756/1‑94 (MQ=60)
AGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAA > SRR4302545.2606926/1‑94 (MQ=60)
ACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTA < SRR4302545.2521123/94‑1 (MQ=60)
CGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTAC > SRR4302545.9149318/1‑94 (MQ=60)
GCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCATGGCGCGCACGGTTTGCGCCGGAAACTGTACG > SRR4302545.3316066/1‑94 (MQ=60)
CCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACG < SRR4302545.1337874/94‑1 (MQ=60)
CCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGT < SRR4302545.4500363/94‑1 (MQ=60)
CCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGT < SRR4302545.1021587/94‑1 (MQ=60)
CCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGT < SRR4302545.10525997/94‑1 (MQ=60)
CCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGT > SRR4302545.1517561/1‑94 (MQ=60)
CCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGT > SRR4302545.7717189/1‑94 (MQ=60)
CTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTC > SRR4302545.2702104/1‑94 (MQ=60)
CTAAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTC < SRR4302545.4190855/94‑1 (MQ=60)
TCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCA < SRR4302545.160343/94‑1 (MQ=60)
CAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCAT < SRR4302545.8993066/94‑1 (MQ=60)
CAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCAT > SRR4302545.8041834/1‑94 (MQ=60)
CAAGACAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCAT < SRR4302545.1823920/94‑1 (MQ=60)
AAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATC < SRR4302545.5997747/94‑1 (MQ=60)
AGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCT > SRR4302545.7251788/1‑94 (MQ=60)
GCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTC < SRR4302545.818267/94‑1 (MQ=60)
GCCAGATCGTGCGGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCTCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTC < SRR4302545.3859965/94‑1 (MQ=60)
CCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGAGCCCGCGCCAATCGCAGTGGCGCGCACGGCTTGGGCCGGTAAATGTACGTTAATCTCA > SRR4302545.4726237/1‑94 (MQ=60)
CAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCAC < SRR4302545.10467492/94‑1 (MQ=60)
AGATTGTGCTGCCAGAGAGCGAAAGTGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACG < SRR4302545.9728703/94‑1 (MQ=60)
AGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACG > SRR4302545.4767774/1‑94 (MQ=60)
AGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACG < SRR4302545.10673723/94‑1 (MQ=60)
AGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACG > SRR4302545.10247217/1‑94 (MQ=60)
GATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGC < SRR4302545.1207600/94‑1 (MQ=60)
ATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCA < SRR4302545.3267169/94‑1 (MQ=60)
ATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCA > SRR4302545.9634683/1‑94 (MQ=60)
ATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCA > SRR4302545.5493351/1‑94 (MQ=60)
TTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAG < SRR4302545.4523254/94‑1 (MQ=60)
TTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAG < SRR4302545.9558183/94‑1 (MQ=60)
TGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGG > SRR4302545.4524507/1‑94 (MQ=60)
TGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGG < SRR4302545.4373516/94‑1 (MQ=60)
TGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGGTCATCTCACGCAGG > SRR4302545.6946465/1‑94 (MQ=60)
GTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGC < SRR4302545.1032190/94‑1 (MQ=60)
GTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGC > SRR4302545.3461180/1‑94 (MQ=60)
GTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGC < SRR4302545.8774237/94‑1 (MQ=60)
TGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCG < SRR4302545.1682526/94‑1 (MQ=60)
GCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGC < SRR4302545.10033575/94‑1 (MQ=60)
CTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCG > SRR4302545.8681858/1‑94 (MQ=60)
CTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCG > SRR4302545.2512564/1‑94 (MQ=60)
CTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCG > SRR4302545.4407065/1‑94 (MQ=60)
GCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGA > SRR4302545.2670729/1‑94 (MQ=60)
CCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGAT < SRR4302545.4905578/94‑1 (MQ=60)
CAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATG > SRR4302545.2121734/1‑94 (MQ=60)
AGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGG > SRR4302545.10736723/1‑94 (MQ=60)
AGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGG < SRR4302545.6441185/94‑1 (MQ=60)
AGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGG > SRR4302545.10053040/1‑94 (MQ=60)
AGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGG > SRR4302545.3162104/1‑94 (MQ=60)
AGAGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTC > SRR4302545.4386930/1‑94 (MQ=60)
AGCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCAT < SRR4302545.10637180/94‑1 (MQ=60)
GCGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATG < SRR4302545.10010748/94‑1 (MQ=60)
GGAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGC < SRR4302545.6824652/94‑1 (MQ=60)
GAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCA > SRR4302545.7289869/1‑94 (MQ=60)
GAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCA > SRR4302545.9996361/1‑94 (MQ=60)
GAAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCA < SRR4302545.6174734/94‑1 (MQ=60)
AAAGGGTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGCCATGCAG > SRR4302545.3877627/1‑94 (MQ=60)
AAGGGTATGCTCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGC < SRR4302545.5645937/94‑1 (MQ=60)
AGGGTATGCGCGCCCGCGCCAGTCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCG > SRR4302545.7368893/1‑94 (MQ=60)
GTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAG > SRR4302545.409135/1‑94 (MQ=60)
GTATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAG < SRR4302545.120470/94‑1 (MQ=60)
gtgcggcCCCGCGCCAATCGCCGGGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTT < SRR4302545.4034388/87‑1 (MQ=60)
ATGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTT < SRR4302545.5364241/94‑1 (MQ=60)
TGCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTG > SRR4302545.6419218/1‑94 (MQ=60)
GCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGC > SRR4302545.1938732/1‑94 (MQ=60)
GCGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGC < SRR4302545.1547125/94‑1 (MQ=60)
CGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCC < SRR4302545.4779757/94‑1 (MQ=60)
CGCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCC < SRR4302545.9029093/94‑1 (MQ=60)
GCGCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCA < SRR4302545.482583/94‑1 (MQ=60)
GCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGC > SRR4302545.5818080/1‑94 (MQ=60)
GCCCGCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGC > SRR4302545.493923/1‑94 (MQ=60)
GCGCCACTCGCCGTGGCGCGCGCGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCG < SRR4302545.3355444/94‑1 (MQ=60)
GCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCG < SRR4302545.1458723/94‑1 (MQ=60)
GCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCG < SRR4302545.5377725/94‑1 (MQ=60)
GCGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCG < SRR4302545.4897237/94‑1 (MQ=60)
CGCCAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGG < SRR4302545.609277/94‑1 (MQ=60)
CAATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCC > SRR4302545.1416244/1‑94 (MQ=60)
AATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCA > SRR4302545.4453474/1‑94 (MQ=60)
AATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCA > SRR4302545.7570695/1‑94 (MQ=60)
AATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGCCATGCAGCGCAGGTGCCAGCAGCTGGCCA > SRR4302545.644067/1‑94 (MQ=60)
ATCGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGATGCCAGCAGCGGGCCAA > SRR4302545.8339057/1‑94 (MQ=60)
CGCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCAATA < SRR4302545.2190411/94‑1 (MQ=60)
GCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCAATAT < SRR4302545.8212937/94‑1 (MQ=60)
GCCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCAATAT > SRR4302545.10430844/1‑94 (MQ=60)
|
ATCGCCACCGGCAAATTGCGCAGCGGCAGTTGTACGCCCTCAAGCCAGATTGTGCTGCCAGAGAGCGAAAGGGTATGCGCGCCCGCGCCAATCACCGTGGCGCGCACGGTTTGCGCCGGAAACTGTACGTTCATCTCACGCAGGCGCGGATGGTCATGCAGCGCAGTTGCCAGCAGCGGGCCAATAT > NC_000913/2563877‑2564063
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
