Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	647	270.1	21258240	98.4%	20918108	94.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,656,335	G→A	D207D (GAC→GAT)	hscA ←	HscA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,656,335	0	G	A	99.2%	1008.0 / ‑3.7	267	D207D (GAC→GAT)	hscA	HscA
Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (134/131); total (135/132)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.14e-01

Only 100 of 279 total aligned reads displayed.

CGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGA  >  NC_000913/2656244‑2656425

cgccgAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATc                                                                                          <  2:968089/94‑1 (MQ=255)

cgccgAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATc                                                                                          >  1:3699478/1‑94 (MQ=255)

 gccgAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCa                                                                                         >  1:6804882/1‑94 (MQ=255)

  ccgAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCAt                                                                                        <  2:2133193/94‑1 (MQ=255)

  ccgAGCGCGGAATCACCGCCGGGTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCAt                                                                                        >  1:344645/1‑94 (MQ=255)

    gAGCGCGGAATCACCGCCGGTTGCCAGCACGTCAAACACGCCGCGACTAAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATaa                                                                                      <  2:4988711/94‑1 (MQ=255)

     aGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATaaa                                                                                     <  2:9259525/94‑1 (MQ=255)

        gcgGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACgg                                                                                  <  2:8236258/94‑1 (MQ=255)

         cgGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGc                                                                                 <  2:429591/94‑1 (MQ=255)

          ggAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCg                                                                                >  1:1578013/1‑94 (MQ=255)

            aaTCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGAt                                                                              >  2:5588486/1‑94 (MQ=255)

             aTCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGAAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATc                                                                             >  1:8226373/1‑94 (MQ=255)

              tCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCa                                                                            <  2:5884936/94‑1 (MQ=255)

              tCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCa                                                                            <  2:799564/94‑1 (MQ=255)

               cACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCAc                                                                           <  1:10062847/94‑1 (MQ=255)

               cACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCAc                                                                           <  2:6687343/94‑1 (MQ=255)

                 ccgccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGc                                                                         >  2:4554024/1‑94 (MQ=255)

                  cgccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGcc                                                                        >  2:1463384/1‑94 (MQ=255)

                  cgccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGcc                                                                        <  2:2821697/94‑1 (MQ=255)

                  cgccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGcc                                                                        >  1:6941620/1‑94 (MQ=255)

                   gccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCt                                                                       >  2:7382662/1‑94 (MQ=255)

                   gccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCt                                                                       <  2:171913/94‑1 (MQ=255)

                    ccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCtt                                                                      <  2:7898291/94‑1 (MQ=255)

                    ccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCtt                                                                      >  2:6553653/1‑94 (MQ=255)

                     cgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTc                                                                     >  2:6916364/1‑94 (MQ=255)

                     cgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTc                                                                     >  1:4708688/1‑94 (MQ=255)

                       gTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCt                                                                   >  1:7144769/1‑94 (MQ=255)

                         tGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGa                                                                 >  2:6112337/1‑94 (MQ=255)

                          gCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGAc                                                                >  2:3350293/1‑94 (MQ=255)

                           ccAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGAcc                                                               <  2:5278808/94‑1 (MQ=255)

                            cAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCg                                                              >  1:9858232/1‑94 (MQ=255)

                            cAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCg                                                              >  1:2322137/1‑94 (MQ=255)

                             aGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCgg                                                             <  2:3286204/94‑1 (MQ=255)

                                aCTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAAt                                                          <  2:6863169/94‑1 (MQ=255)

                                 cTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATc                                                         <  2:1067781/94‑1 (MQ=255)

                                 cTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATc                                                         >  1:5757372/1‑94 (MQ=255)

                                 cTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATc                                                         <  1:808356/94‑1 (MQ=255)

                                    cAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAg                                                      >  1:9962685/1‑94 (MQ=255)

                                    cAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAg                                                      <  2:8428943/94‑1 (MQ=255)

                                     aaaCACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGc                                                     >  1:898649/1‑94 (MQ=255)

                                      aaCACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATTAACGGCGATCACGCCTTCCTGACCGGAATCCAGcc                                                    <  2:4449904/94‑1 (MQ=255)

                                       acacGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGccc                                                   <  2:1010874/94‑1 (MQ=255)

                                       acacGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGccc                                                   <  2:5740119/94‑1 (MQ=255)

                                       acacGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGccc                                                   >  1:6735712/1‑94 (MQ=255)

                                        cacGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATTCAGCCCg                                                  >  2:254837/1‑94 (MQ=255)

                                          cgccgcGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTa                                                >  2:4703584/1‑94 (MQ=255)

                                            ccgcGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAACCGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAgg                                              <  1:3533432/94‑1 (MQ=255)

                                             cgcgACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGc                                             >  1:2058027/1‑94 (MQ=255)

                                             cgcgACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGc                                             >  1:4196044/1‑94 (MQ=255)

                                              gcgACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCg                                            <  1:1333056/94‑1 (MQ=255)

                                              gcgACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCg                                            <  1:7612668/94‑1 (MQ=255)

                                                gACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAt                                          >  1:1174005/1‑94 (MQ=255)

                                                gACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAt                                          >  2:5438133/1‑94 (MQ=255)

                                                gACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAt                                          >  1:8509188/1‑94 (MQ=255)

                                                gACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAt                                          >  1:6494806/1‑94 (MQ=255)

                                                 aCTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATa                                         <  1:7471908/94‑1 (MQ=255)

                                                  cTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAg                                        >  2:6059126/1‑94 (MQ=255)

                                                   ttAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGc                                       >  1:10289139/1‑94 (MQ=255)

                                                        cgcAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAg                                  <  1:1365130/94‑1 (MQ=255)

                                                        cgcAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAg                                  <  2:3740576/94‑1 (MQ=255)

                                                        cgcAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAg                                  <  2:10485301/94‑1 (MQ=255)

                                                         gcAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGTGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGc                                 <  2:2303195/94‑1 (MQ=255)

                                                         gcAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGc                                 <  2:4856760/94‑1 (MQ=255)

                                                          cAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcg                                >  2:2740830/1‑94 (MQ=255)

                                                           aGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGTAGcgg                               >  2:4495357/1‑94 (MQ=255)

                                                           aGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcgg                               >  2:3623556/1‑94 (MQ=255)

                                                            gAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCAAGCCCGTAGGCGATAGCCGCAGcggt                              >  1:893242/1‑94 (MQ=255)

                                                             aaTGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCTGcggtc                             >  1:9383927/1‑94 (MQ=255)

                                                             aaTGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggtc                             <  1:8741233/94‑1 (MQ=255)

                                                              aTGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGctgtcg                            >  1:1143289/1‑94 (MQ=255)

                                                               tGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCCTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCACcggtcgg                           >  1:5622169/1‑94 (MQ=255)

                                                                 gAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggtcgggt                         >  1:5197301/1‑92 (MQ=255)

                                                                 gAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGtt                         >  2:4163983/1‑94 (MQ=255)

                                                                  aaaTATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTc                        >  2:3086302/1‑94 (MQ=255)

                                                                   aaTATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCg                       <  2:1272643/94‑1 (MQ=255)

                                                                      atCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTta                    <  2:1518705/94‑1 (MQ=255)

                                                                         aaaCGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagt                 <  1:4800220/94‑1 (MQ=255)

                                                                         aaaCGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaaga                 >  2:8659416/1‑93 (MQ=255)

                                                                          aaCGTCCCGCCACCGACATCAGAACGGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagta                <  1:253167/94‑1 (MQ=255)

                                                                           aCGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagtaa               >  1:283953/1‑94 (MQ=255)

                                                                            cGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagtaag              <  2:553452/94‑1 (MQ=255)

                                                                               cccGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAgcgc           >  1:9251151/1‑94 (MQ=255)

                                                                                  gCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAgg        <  1:3939012/94‑1 (MQ=255)

                                                                                  gCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAgg        <  1:4099085/94‑1 (MQ=255)

                                                                                   ccACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGa       >  2:7005206/1‑94 (MQ=255)

                                                                                   ccACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATATCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAggc       >  2:10236637/1‑93 (MQ=255)

                                                                                   ccACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGa       >  1:4414911/1‑94 (MQ=255)

                                                                                    cACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATTCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGAc      <  1:9690569/94‑1 (MQ=255)

                                                                                    cACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGAc      <  1:6864767/94‑1 (MQ=255)

                                                                                    cACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGATAAGTAAGCGCAGGAc      >  2:9342216/1‑94 (MQ=255)

                                                                                     aCCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACg     <  1:5962141/94‑1 (MQ=255)

                                                                                     aCCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACg     <  1:7787671/94‑1 (MQ=255)

                                                                                      ccGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGt    <  2:3564512/94‑1 (MQ=255)

                                                                                       cGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTg   <  2:8901907/94‑1 (MQ=255)

                                                                                       cGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTg   <  2:6231964/94‑1 (MQ=255)

                                                                                       cGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTg   <  1:3281551/94‑1 (MQ=255)

                                                                                       cGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTg   >  1:7936855/1‑94 (MQ=255)

                                                                                       cGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTg   <  2:9798716/94‑1 (MQ=255)

                                                                                       cGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAATAAGCGCAGGACGTg   >  2:7713313/1‑94 (MQ=255)

                                                                                       cGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGATCGTTAAGTAAGCGCAGGACGTg   >  1:5840698/1‑94 (MQ=255)

CGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGA  >  NC_000913/2656244‑2656425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAGG  >  NC_000913/2656243‑2656428

CCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGAT                                                                                              >  SRR4302545.6820403/1‑94 (MQ=60)

CCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGAT                                                                                              <  SRR4302545.8010437/94‑1 (MQ=60)

 CGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATC                                                                                             >  SRR4302545.3790136/1‑94 (MQ=60)

 CGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATC                                                                                             >  SRR4302545.3594377/1‑94 (MQ=60)

 CGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATC                                                                                             >  SRR4302545.7386198/1‑94 (MQ=60)

  GCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCA                                                                                            >  SRR4302545.6991861/1‑94 (MQ=60)

  GCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCA                                                                                            <  SRR4302545.10941983/94‑1 (MQ=60)

   CCGAGCGCGGAATCACCGCCGGGTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCAT                                                                                           >  SRR4302545.352042/1‑94 (MQ=60)

     GAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAA                                                                                         <  SRR4302545.8890726/94‑1 (MQ=60)

       GCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAAC                                                                                       <  SRR4302545.3415823/94‑1 (MQ=60)

       GCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAAC                                                                                       <  SRR4302545.6955261/94‑1 (MQ=60)

       GCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAAC                                                                                       <  SRR4302545.6955262/94‑1 (MQ=60)

         GCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGG                                                                                     >  SRR4302545.9135253/1‑94 (MQ=60)

           GGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCG                                                                                   <  SRR4302545.7768862/94‑1 (MQ=60)

           GGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCG                                                                                   >  SRR4302545.1615253/1‑94 (MQ=60)

             AATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGAT                                                                                 >  SRR4302545.4848577/1‑94 (MQ=60)

             AATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGAT                                                                                 <  SRR4302545.8169681/94‑1 (MQ=60)

              ATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATC                                                                                <  SRR4302545.4700428/94‑1 (MQ=60)

              ATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATC                                                                                <  SRR4302545.5971003/94‑1 (MQ=60)

              ATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGAAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATC                                                                                >  SRR4302545.8464579/1‑94 (MQ=60)

               TCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCA                                                                               <  SRR4302545.4931540/94‑1 (MQ=60)

                CACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCAC                                                                              <  SRR4302545.4408135/94‑1 (MQ=60)

                CACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCAC                                                                              <  SRR4302545.10360647/94‑1 (MQ=60)

                  CCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGC                                                                            >  SRR4302545.9330068/1‑94 (MQ=60)

                   CGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCC                                                                           >  SRR4302545.3031613/1‑94 (MQ=60)

                   CGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCC                                                                           >  SRR4302545.7132968/1‑94 (MQ=60)

                    GCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCT                                                                          <  SRR4302545.9831735/94‑1 (MQ=60)

                    GCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCT                                                                          <  SRR4302545.5131393/94‑1 (MQ=60)

                      CGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTC                                                                        >  SRR4302545.4828681/1‑94 (MQ=60)

                        GTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATTACGCCTTCCT                                                                      <  SRR4302545.3535090/94‑1 (MQ=60)

                        GTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCT                                                                      >  SRR4302545.7343039/1‑94 (MQ=60)

                        GTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCT                                                                      >  SRR4302545.1743003/1‑94 (MQ=60)

                        GTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCT                                                                      <  SRR4302545.9244497/94‑1 (MQ=60)

                         TTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTG                                                                     >  SRR4302545.7129024/1‑94 (MQ=60)

                          TGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGA                                                                    <  SRR4302545.3837147/94‑1 (MQ=60)

                           GCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGAC                                                                   >  SRR4302545.10885122/1‑94 (MQ=60)

                            CCAGCACTTCAACCACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAATGGCGATCTCGCCTTCCTGAGC                                                                  >  SRR4302545.6911511/1‑94 (MQ=60)

                            CCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACC                                                                  <  SRR4302545.4163678/94‑1 (MQ=60)

                             CAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCG                                                                 >  SRR4302545.2378670/1‑94 (MQ=60)

                             CAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCG                                                                 >  SRR4302545.10151224/1‑94 (MQ=60)

                                 ACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAAT                                                             >  SRR4302545.7108280/1‑94 (MQ=60)

                                 ACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTACCGCCGCCGAGATCATAAACGGCGATCACGCCTTACTGACCGGAAT                                                             >  SRR4302545.6891631/1‑94 (MQ=60)

                                  CTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATC                                                            >  SRR4302545.5912014/1‑94 (MQ=60)

                                  CTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATC                                                            <  SRR4302545.826508/94‑1 (MQ=60)

                                   TTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCC                                                           <  SRR4302545.429214/94‑1 (MQ=60)

                                   TTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCC                                                           >  SRR4302545.3726582/1‑94 (MQ=60)

                                     CAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAG                                                         >  SRR4302545.10258247/1‑94 (MQ=60)

                                      AAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGC                                                        >  SRR4302545.918793/1‑94 (MQ=60)

                                        ACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCC                                                      >  SRR4302545.6920376/1‑94 (MQ=60)

                                        ACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCA                                                      <  SRR4302545.10244924/94‑1 (MQ=60)

                                           CGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTA                                                   <  SRR4302545.6830693/94‑1 (MQ=60)

                                           CGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTA                                                   >  SRR4302545.8410818/1‑94 (MQ=60)

                                             CCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAACCGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGG                                                 <  SRR4302545.3619996/94‑1 (MQ=60)

                                             CCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGG                                                 >  SRR4302545.3414066/1‑94 (MQ=60)

                                              CGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGC                                                >  SRR4302545.2108730/1‑94 (MQ=60)

                                              CGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGC                                                >  SRR4302545.4300782/1‑94 (MQ=60)

                                               GCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCG                                               <  SRR4302545.1362731/94‑1 (MQ=60)

                                               GCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCG                                               <  SRR4302545.7828033/94‑1 (MQ=60)

                                               GCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCG                                               >  SRR4302545.709726/1‑94 (MQ=60)

                                               GCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCG                                               >  SRR4302545.3675482/1‑94 (MQ=60)

                                                 GACTTAAGCGCAGACTGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCAATCACGCCTTCCTGCCCGGACTCCAGCCCGTAGGCGAT                                             >  SRR4302545.9349995/1‑94 (MQ=60)

                                                 GACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAT                                             <  SRR4302545.1445252/94‑1 (MQ=60)

                                                 GACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAT                                             >  SRR4302545.8755042/1‑94 (MQ=60)

                                                 GACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAT                                             >  SRR4302545.6672388/1‑94 (MQ=60)

                                                 GACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAT                                             <  SRR4302545.1445253/94‑1 (MQ=60)

                                                 GACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAT                                             >  SRR4302545.1200020/1‑94 (MQ=60)

                                                  ACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATA                                            <  SRR4302545.7683432/94‑1 (MQ=60)

                                                    TTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGC                                          >  SRR4302545.10592584/1‑94 (MQ=60)

                                                     TAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCC                                         <  SRR4302545.1193651/94‑1 (MQ=60)

                                                      AAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCG                                        <  SRR4302545.5839044/94‑1 (MQ=60)

                                                       AGCGCAGAATGGAAATATCAAATGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGC                                       <  SRR4302545.8640881/94‑1 (MQ=60)

                                                         CGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAG                                     <  SRR4302545.1395676/94‑1 (MQ=60)

                                                            AGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGG                                  <  SRR4302545.2406757/94‑1 (MQ=60)

                                                             GAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCAAGCCCGTAGGCGATAGCCGCAGCGGT                                 >  SRR4302545.913277/1‑94 (MQ=60)

                                                             GAATGGAAATATCAAACGTACCGCCAACGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGAAGCGGT                                 >  SRR4302545.1395214/1‑94 (MQ=60)

                                                              AATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTTACCGGAATCCAGCCCGTAGTCGCCAGCCGAAGCGGTC                                >  SRR4302545.1202254/1‑94 (MQ=60)

                                                              AATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCTGCGGTC                                >  SRR4302545.9659328/1‑94 (MQ=60)

                                                              AATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTC                                <  SRR4302545.8994966/94‑1 (MQ=60)

                                                              AATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTC                                <  SRR4302545.10027874/94‑1 (MQ=60)

                                                              AATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTC                                <  SRR4302545.2601212/94‑1 (MQ=60)

                                                              AATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACAGCGATCACGCCTTCCTGACCGGAATCCAGCCCCTAGACGATAGCCGCAGCAGTC                                >  SRR4302545.10486826/1‑94 (MQ=60)

                                                               ATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCTGTCG                               >  SRR4302545.1168344/1‑94 (MQ=60)

                                                               ATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCG                               >  SRR4302545.2406048/1‑94 (MQ=60)

                                                               ATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCG                               <  SRR4302545.7001939/94‑1 (MQ=60)

                                                                TGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGG                              <  SRR4302545.5365993/94‑1 (MQ=60)

                                                                TGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGG                              >  SRR4302545.9949196/1‑94 (MQ=60)

                                                                TGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCCTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCACCGGTCGG                              >  SRR4302545.5771584/1‑94 (MQ=60)

                                                                  GAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTT                            >  SRR4302545.9110127/1‑94 (MQ=60)

                                                                  GAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGGT                            >  SRR4302545.5331173/1‑94 (MQ=60)

                                                                   AAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTC                           >  SRR4302545.10242566/1‑94 (MQ=60)

                                                                   AAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTC                           >  SRR4302545.8059696/1‑94 (MQ=60)

                                                                     ATATCAAACGTCCCGCCACCGAGATCATAAGCGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGT                         <  SRR4302545.1314136/94‑1 (MQ=60)

                                                                     ATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGT                         >  SRR4302545.4806931/1‑94 (MQ=60)

                                                                     ATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGT                         >  SRR4302545.2338338/1‑94 (MQ=60)

                                                                      TATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTT                        <  SRR4302545.832562/94‑1 (MQ=60)

                                                                      TATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTT                        >  SRR4302545.9206905/1‑94 (MQ=60)

                                                                       ATCAAGCGTCCCGCCAGCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTA                       <  SRR4302545.5834431/94‑1 (MQ=60)

                                                                       ATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTTACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTA                       >  SRR4302545.6518043/1‑94 (MQ=60)

                                                                       ATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTA                       <  SRR4302545.4284049/94‑1 (MQ=60)

                                                                        TCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAA                      >  SRR4302545.6104039/1‑94 (MQ=60)

                                                                         CACACGACCCGCCACCGATATCATAAACGGCGATCACGACTTCCTGACCGGAATCCAGCCCGTAGGCGGTAGCCGCAGCGGGCGGTTCTTTAAG                     <  SRR4302545.7286235/94‑1 (MQ=60)

                                                                         CAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAG                     >  SRR4302545.804626/1‑94 (MQ=60)

                                                                         CAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAG                     >  SRR4302545.4060747/1‑94 (MQ=60)

                                                                         CAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAG                     <  SRR4302545.1275570/94‑1 (MQ=60)

                                                                         CAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAG                     <  SRR4302545.1846474/94‑1 (MQ=60)

                                                                          AACCGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCAGTGGCCGCAGCGCTCGGTTCGTTAAGT                    <  SRR4302545.9602831/94‑1 (MQ=60)

                                                                          AAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGT                    <  SRR4302545.7435467/94‑1 (MQ=60)

                                                                          AAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGT                    <  SRR4302545.4922955/94‑1 (MQ=60)

                                                                           AACGTCCCGCCACCGACATCAGAACGGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTA                   <  SRR4302545.258384/94‑1 (MQ=60)

                                                                            ACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAA                  >  SRR4302545.289892/1‑94 (MQ=60)

                                                                              GTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGC                >  SRR4302545.7877734/1‑94 (MQ=60)

                                                                               TCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCG               <  SRR4302545.537688/94‑1 (MQ=60)

                                                                               TCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCG               <  SRR4302545.8515918/94‑1 (MQ=60)

                                                                                CCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGC              >  SRR4302545.9522386/1‑94 (MQ=60)

                                                                                CCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGC              >  SRR4302545.9522387/1‑94 (MQ=60)

                                                                                 CCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCA             <  SRR4302545.8191169/94‑1 (MQ=60)

                                                                                   GCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGG           <  SRR4302545.4201698/94‑1 (MQ=60)

                                                                                   GCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGG           <  SRR4302545.4037379/94‑1 (MQ=60)

                                                                                   CCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGG           <  SRR4302545.1019462/94‑1 (MQ=60)

                                                                                    CCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGA          >  SRR4302545.4527092/1‑94 (MQ=60)

                                                                                     CACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATTCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGAC         <  SRR4302545.9978472/94‑1 (MQ=60)

                                                                                     CACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGAC         <  SRR4302545.7053396/94‑1 (MQ=60)

                                                                                     CACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGAC         >  SRR4302545.6590135/1‑94 (MQ=60)

                                                                                     CACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCAGCAGCGGTCGGTTCGTTAAGTTAGCGCAGGAC         <  SRR4302545.7246358/94‑1 (MQ=60)

                                                                                     CACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAAGCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGAC         <  SRR4302545.1177638/94‑1 (MQ=60)

                                                                                      ACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACG        <  SRR4302545.8008115/94‑1 (MQ=60)

                                                                                      ACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACG        <  SRR4302545.6122978/94‑1 (MQ=60)

                                                                                       CGGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGT       <  SRR4302545.10454537/94‑1 (MQ=60)

                                                                                       CCGAGGTCATAAACTGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGT       <  SRR4302545.10939167/94‑1 (MQ=60)

                                                                                       CCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGG       >  SRR4302545.2293466/1‑94 (MQ=60)

                                                                                       CCGAGATCATAAACGGCGATCACGCCTTCATGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGG       >  SRR4302545.7691230/1‑94 (MQ=60)

                                                                                        CGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTG      >  SRR4302545.8162319/1‑94 (MQ=60)

                                                                                        CGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTG      <  SRR4302545.3361958/94‑1 (MQ=60)

                                                                                        CGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGATCGTTAAGTAAGCGCAGGACGTG      >  SRR4302545.5997952/1‑94 (MQ=60)

                                                                                        CGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGATCGTTAAGTAAGCGCAGGACGTG      >  SRR4302545.5997951/1‑94 (MQ=60)

                                                                                        CGAGATCATAAACGGCGATCACGACTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGTAGCGGTCGGCTCGTTAAGTAAGCGCAGGctgta      >  SRR4302545.8350697/1‑89 (MQ=60)

                                                                                        CGAGATAATAAACGGCGATCACGCCTTCCGGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTG      <  SRR4302545.4281678/94‑1 (MQ=60)

                                                                                         GAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGA     >  SRR4302545.6520807/1‑94 (MQ=60)

                                                                                         GAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGA     <  SRR4302545.10071168/94‑1 (MQ=60)

                                                                                          AGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAA    >  SRR4302545.8789487/1‑94 (MQ=60)

                                                                                          AGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGACAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAA    <  SRR4302545.948718/94‑1 (MQ=60)

                                                                                          AGATCATAAACGGCGATCACGCCTTCCTCGCCGGAATCCAGCCCGTAGGCCATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAA    <  SRR4302545.2020171/94‑1 (MQ=60)

                                                                                           GATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAG   >  SRR4302545.10893233/1‑94 (MQ=60)

                                                                                            ATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAGG  >  SRR4302545.7419688/1‑94 (MQ=60)

CCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAGG  >  NC_000913/2656243‑2656428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`