Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,656,335	G→A	D207D (GAC→GAT)	hscA ←	HscA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,656,335	0	G	A	99.5%	680.9 / NA	193	D207D (GAC→GAT)	hscA	HscA
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (102/90); total (103/90)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 199 total aligned reads displayed.

GCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTG  >  NC_000913/2656245‑2656424

gccgAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATc                                                                                         <  2:946662/93‑1 (MQ=255)

 ccgAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCa                                                                                        <  2:6104533/93‑1 (MQ=255)

 ccgAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCa                                                                                        <  1:5855807/93‑1 (MQ=255)

   gAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATa                                                                                      >  1:3918417/1‑93 (MQ=255)

   gAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATa                                                                                      >  1:595900/1‑93 (MQ=255)

   gAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATa                                                                                      >  2:1641810/1‑93 (MQ=255)

     gcgcGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATaaa                                                                                    <  1:95693/93‑1 (MQ=255)

       gcgGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATACACg                                                                                  >  1:2137956/1‑93 (MQ=255)

       gcgGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACg                                                                                  <  1:6284189/93‑1 (MQ=255)

       gcgAAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACg                                                                                  <  1:5569256/93‑1 (MQ=255)

       cggaaaTCCCCACCGGTTGCCAGCATCTCAAACCCGCCGCGACTTAGGCGCAGAATGGAAATATCAAACGTCCCGCCACAGAGATCATAAACg                                                                                  <  2:1158006/89‑1 (MQ=255)

        gggAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACgg                                                                                 <  1:4987995/92‑1 (MQ=255)

        cgGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACgg                                                                                 >  1:4862750/1‑93 (MQ=255)

        cgGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACgg                                                                                 >  2:5700743/1‑93 (MQ=255)

        cgGAATCACAGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACgg                                                                                 >  2:5401646/1‑93 (MQ=255)

          gAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCg                                                                               >  1:1783670/1‑93 (MQ=255)

           aaTCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGa                                                                              <  2:4000605/93‑1 (MQ=255)

            aTCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGAt                                                                             <  1:2038645/93‑1 (MQ=255)

              cACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCa                                                                           >  1:3650503/1‑93 (MQ=255)

               aCCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGCTCAc                                                                          >  1:1124190/1‑93 (MQ=255)

               aCCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCAc                                                                          <  1:3426144/93‑1 (MQ=255)

                 cgcctGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGCCCCGCCACCGAGATCATAAACGGCGATCACGc                                                                        <  2:3699307/93‑1 (MQ=255)

                 cgccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGc                                                                        >  1:2191759/1‑93 (MQ=255)

                 cgccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGc                                                                        >  2:5865184/1‑93 (MQ=255)

                  gccgGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGcc                                                                       <  1:1764651/93‑1 (MQ=255)

                     ggTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTc                                                                    <  2:2618047/93‑1 (MQ=255)

                      gTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTcc                                                                   <  2:2567819/93‑1 (MQ=255)

                      gTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTcc                                                                   <  2:2047486/93‑1 (MQ=255)

                      gTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTcc                                                                   >  1:2435383/1‑93 (MQ=255)

                      gTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTcc                                                                   >  1:4077162/1‑93 (MQ=255)

                       ttGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCt                                                                  <  2:3888228/93‑1 (MQ=255)

                         gCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGa                                                                <  1:734756/93‑1 (MQ=255)

                          ccAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGAc                                                               <  2:2830644/93‑1 (MQ=255)

                            aGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCg                                                             >  1:4414784/1‑93 (MQ=255)

                            aGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCg                                                             >  2:2857856/1‑93 (MQ=255)

                               aCTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGaa                                                          >  1:755273/1‑93 (MQ=255)

                                cTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGGCCGGAAt                                                         <  2:6360833/93‑1 (MQ=255)

                                cTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAAt                                                         <  1:6019679/93‑1 (MQ=255)

                                 ttCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATc                                                        >  2:4805795/1‑93 (MQ=255)

                                  tCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATcc                                                       <  2:5258082/93‑1 (MQ=255)

                                  tCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATcc                                                       <  1:1852064/93‑1 (MQ=255)

                                  tCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATcc                                                       <  2:5327421/93‑1 (MQ=255)

                                  tCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATcc                                                       >  2:4076954/1‑93 (MQ=255)

                                   cAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCGCCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCa                                                      <  2:4175112/93‑1 (MQ=255)

                                     aaCACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGc                                                    >  2:5079588/1‑93 (MQ=255)

                                     aaCACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGc                                                    <  1:2349626/93‑1 (MQ=255)

                                     aaCACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGc                                                    >  1:2903028/1‑93 (MQ=255)

                                     aaCACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGc                                                    >  1:5072151/1‑93 (MQ=255)

                                      acacGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGcc                                                   <  1:2011308/93‑1 (MQ=255)

                                       cacGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGccc                                                  <  1:4021812/93‑1 (MQ=255)

                                        acGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCg                                                 >  1:3971964/1‑93 (MQ=255)

                                        acGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCg                                                 >  1:32795/1‑93 (MQ=255)

                                        acGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCg                                                 >  1:6437757/1‑93 (MQ=255)

                                         cgccgcGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGt                                                >  1:5161862/1‑93 (MQ=255)

                                          gccgcGCCTTAAGCGCAGAATGGAAATATCAAACGTCCCGACACCGAGATCATAAACGGCGATCACGCCTTCCTGCCCGGAATCCAGCCCgaa                                               >  2:5136149/1‑91 (MQ=255)

                                          gccgcGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTa                                               <  1:2563400/93‑1 (MQ=255)

                                           ccgcGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAg                                              >  2:4502304/1‑93 (MQ=255)

                                            cgcgACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAgg                                             >  2:911813/1‑93 (MQ=255)

                                             gcgACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGc                                            >  2:3188929/1‑93 (MQ=255)

                                             gcgACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGc                                            <  2:460503/93‑1 (MQ=255)

                                               gACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGa                                          >  2:2071567/1‑93 (MQ=255)

                                                aCTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGAt                                         <  1:3600595/93‑1 (MQ=255)

                                                aCTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTACTGACCGGAATCCAGCCCGTAGGCGAt                                         >  2:2369722/1‑93 (MQ=255)

                                                 cTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATa                                        <  2:561673/93‑1 (MQ=255)

                                                  ttAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAg                                       >  1:6216539/1‑93 (MQ=255)

                                                    aaGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGcc                                     >  1:5049347/1‑93 (MQ=255)

                                                           gAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGACCGGAGGCGATAGCCGCAGcgg                              >  2:594829/1‑93 (MQ=255)

                                                            aaTGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggt                             <  2:1384267/93‑1 (MQ=255)

                                                            aaTGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggt                             >  2:5595290/1‑93 (MQ=255)

                                                             aTGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggtc                            <  1:1094890/93‑1 (MQ=255)

                                                              tGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggtcg                           <  2:2507798/93‑1 (MQ=255)

                                                              tGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggtcg                           >  2:190219/1‑93 (MQ=255)

                                                              tGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggtcg                           >  1:5262152/1‑93 (MQ=255)

                                                              gggAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggtcg                           <  1:4708652/92‑1 (MQ=255)

                                                                gAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggtcggt                         <  1:925567/93‑1 (MQ=255)

                                                                gAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGcggtcggt                         <  1:4565011/93‑1 (MQ=255)

                                                                    tatCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCGGCGGACGGGTCGt                     >  1:3859129/1‑93 (MQ=255)

                                                                    tatCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGt                     <  1:6407916/93‑1 (MQ=255)

                                                                    tatCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGt                     >  1:3879697/1‑93 (MQ=255)

                                                                     atCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGtt                    >  1:3085696/1‑93 (MQ=255)

                                                                       cAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaa                  <  2:5359435/93‑1 (MQ=255)

                                                                       cAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaa                  >  1:1348428/1‑93 (MQ=255)

                                                                       cAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaa                  <  2:4734063/93‑1 (MQ=255)

                                                                         aaCGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagt                >  1:2602498/1‑93 (MQ=255)

                                                                          aCGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagta               >  2:2250464/1‑93 (MQ=255)

                                                                           cGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagtaa              <  2:4325507/93‑1 (MQ=255)

                                                                           cGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagtaa              <  1:3371802/93‑1 (MQ=255)

                                                                            gTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagtaag             >  1:5275833/1‑93 (MQ=255)

                                                                            gTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCATGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTtaagtaag             <  1:1412399/93‑1 (MQ=255)

                                                                             tCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAgc            <  1:2957091/93‑1 (MQ=255)

                                                                             tCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAgc            >  1:819254/1‑93 (MQ=255)

                                                                              cccGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAgcg           <  2:3927296/93‑1 (MQ=255)

                                                                               ccGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAgcgc          <  1:1697899/93‑1 (MQ=255)

                                                                               ccGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAgcgc          <  2:1833795/93‑1 (MQ=255)

                                                                                 gCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAg        <  2:4441701/93‑1 (MQ=255)

                                                                                  ccACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAgg       >  1:3507167/1‑93 (MQ=255)

                                                                                   cACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGa      <  2:3061979/93‑1 (MQ=255)

                                                                                    aCCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGAc     >  2:2967106/1‑93 (MQ=255)

                                                                                    aCCGAGATCAAAAACGGCGATCACGCCTTCCTGACCGGAATGCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGAc     <  2:4257512/93‑1 (MQ=255)

                                                                                      cGAGATCATAAACGGCGATCACTCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAACGGCAGGACGt   >  2:2144061/1‑93 (MQ=255)

GCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTG  >  NC_000913/2656245‑2656424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAGG  >  NC_000913/2656242‑2656428

GCCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGA                                                                                               >  SRR4302537.86227/1‑94 (MQ=60)

 CCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGCCTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGAT                                                                                              >  SRR4302537.3309394/1‑94 (MQ=60)

 CCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGAT                                                                                              <  SRR4302537.692862/94‑1 (MQ=60)

 CCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGAT                                                                                              <  SRR4302537.5205919/94‑1 (MQ=60)

 CCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGAT                                                                                              <  SRR4302537.4884858/94‑1 (MQ=60)

  CGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATC                                                                                             >  SRR4302537.3767131/1‑94 (MQ=60)

    CCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCAT                                                                                           <  SRR4302537.5895970/94‑1 (MQ=60)

    CCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCAT                                                                                           >  SRR4302537.5299480/1‑94 (MQ=60)

     CGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATA                                                                                          >  SRR4302537.599973/1‑94 (MQ=60)

     CGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATA                                                                                          >  SRR4302537.3945806/1‑94 (MQ=60)

     CGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATA                                                                                          >  SRR4302537.4833229/1‑94 (MQ=60)

       AGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAA                                                                                        <  SRR4302537.6243880/94‑1 (MQ=60)

        GCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAAC                                                                                       <  SRR4302537.96392/94‑1 (MQ=60)

         CGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATACACG                                                                                      >  SRR4302537.2153005/1‑94 (MQ=60)

         CGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACG                                                                                      <  SRR4302537.4625269/94‑1 (MQ=60)

          GCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGG                                                                                     >  SRR4302537.3328775/1‑94 (MQ=60)

          GCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGG                                                                                     >  SRR4302537.4896298/1‑94 (MQ=60)

          GCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGG                                                                                     <  SRR4302537.6327276/94‑1 (MQ=60)

          GCGAAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGG                                                                                     <  SRR4302537.5607322/94‑1 (MQ=60)

           GGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGC                                                                                    <  SRR4302537.5022367/94‑1 (MQ=60)

            GGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCG                                                                                   >  SRR4302537.1796109/1‑94 (MQ=60)

             GAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGA                                                                                  >  SRR4302537.4080036/1‑94 (MQ=60)

              AATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGAT                                                                                 <  SRR4302537.2429952/94‑1 (MQ=60)

               ATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATC                                                                                >  SRR4302537.3083316/1‑94 (MQ=60)

               ATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATC                                                                                >  SRR4302537.2325788/1‑94 (MQ=60)

               ATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATC                                                                                <  SRR4302537.2052861/94‑1 (MQ=60)

                TCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCA                                                                               >  SRR4302537.3676198/1‑94 (MQ=60)

                 CACCGCCGGTTGCCAGCACTTCAAACACGCCGCTACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCAC                                                                              >  SRR4302537.990061/1‑94 (MQ=60)

                 CACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGCTCAC                                                                              >  SRR4302537.1131988/1‑94 (MQ=60)

                  ACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACG                                                                             <  SRR4302537.3450395/94‑1 (MQ=60)

                   CCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGC                                                                            >  SRR4302537.2207200/1‑94 (MQ=60)

                     GCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCT                                                                          <  SRR4302537.1776941/94‑1 (MQ=60)

                        GGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCC                                                                       >  SRR4302537.938074/1‑94 (MQ=60)

                        GGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCC                                                                       <  SRR4302537.887194/94‑1 (MQ=60)

                        GGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCC                                                                       >  SRR4302537.2452540/1‑94 (MQ=60)

                        GGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCC                                                                       >  SRR4302537.4105631/1‑94 (MQ=60)

                         GTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATTGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCT                                                                      >  SRR4302537.5338440/1‑94 (MQ=60)

                            GCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGAC                                                                   <  SRR4302537.739770/94‑1 (MQ=60)

                              CAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCG                                                                 >  SRR4302537.4445258/1‑94 (MQ=60)

                              CAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCG                                                                 <  SRR4302537.5038839/94‑1 (MQ=60)

                               AGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGG                                                                >  SRR4302537.1407469/1‑94 (MQ=60)

                                 CACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAA                                                              >  SRR4302537.760425/1‑94 (MQ=60)

                                   CTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATC                                                            <  SRR4302537.6061033/94‑1 (MQ=60)

                                    TTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCC                                                           >  SRR4302537.1722218/1‑94 (MQ=60)

                                     TCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCA                                                          <  SRR4302537.1864944/94‑1 (MQ=60)

                                       AAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGC                                                        >  SRR4302537.5107073/1‑94 (MQ=60)

                                       AAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGC                                                        >  SRR4302537.2923423/1‑94 (MQ=60)

                                        AACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCC                                                       <  SRR4302537.2366172/94‑1 (MQ=60)

                                         ACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCC                                                      >  SRR4302537.1576187/1‑94 (MQ=60)

                                         ACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCC                                                      <  SRR4302537.2025327/94‑1 (MQ=60)

                                          CACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCG                                                     >  SRR4302537.6481466/1‑94 (MQ=60)

                                          CACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCG                                                     <  SRR4302537.2523474/94‑1 (MQ=60)

                                          CACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCG                                                     >  SRR4302537.3999767/1‑94 (MQ=60)

                                          CACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCG                                                     <  SRR4302537.4049971/94‑1 (MQ=60)

                                          CACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCG                                                     >  SRR4302537.33055/1‑94 (MQ=60)

                                           ACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGT                                                    >  SRR4302537.5197446/1‑94 (MQ=60)

                                             GCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAG                                                  <  SRR4302537.2581357/94‑1 (MQ=60)

                                              CCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGG                                                 <  SRR4302537.2948984/94‑1 (MQ=60)

                                                GCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCG                                               >  SRR4302537.1875380/1‑94 (MQ=60)

                                                GCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCG                                               <  SRR4302537.4029850/94‑1 (MQ=60)

                                                GCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCG                                               <  SRR4302537.747497/94‑1 (MQ=60)

                                                   ACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATA                                            <  SRR4302537.3625973/94‑1 (MQ=60)

                                                   ACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATA                                            >  SRR4302537.1826951/1‑94 (MQ=60)

                                                   ACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATA                                            >  SRR4302537.2918378/1‑94 (MQ=60)

                                                    CTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAG                                           >  SRR4302537.6259340/1‑94 (MQ=60)

                                                    CTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAG                                           <  SRR4302537.509420/94‑1 (MQ=60)

                                                    CTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAG                                           <  SRR4302537.3456492/94‑1 (MQ=60)

                                                      TAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCC                                         >  SRR4302537.5084112/1‑94 (MQ=60)

                                                         GCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCA                                      <  SRR4302537.3407121/94‑1 (MQ=60)

                                                           GCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGC                                    <  SRR4302537.3960059/94‑1 (MQ=60)

                                                           GCAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGC                                    <  SRR4302537.3942327/94‑1 (MQ=60)

                                                            CAGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCG                                   <  SRR4302537.4427556/94‑1 (MQ=60)

                                                             AGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGG                                  >  SRR4302537.5685863/1‑94 (MQ=60)

                                                             AGAATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGG                                  >  SRR4302537.6279980/1‑94 (MQ=60)

                                                               AATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTC                                >  SRR4302537.388958/1‑94 (MQ=60)

                                                               AATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTC                                <  SRR4302537.2179886/94‑1 (MQ=60)

                                                                ATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCG                               >  SRR4302537.5298360/1‑94 (MQ=60)

                                                                ATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCG                               <  SRR4302537.760521/94‑1 (MQ=60)

                                                                ATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCG                               <  SRR4302537.1102451/94‑1 (MQ=60)

                                                                ATGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCG                               >  SRR4302537.363843/1‑94 (MQ=60)

                                                                 TGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGG                              <  SRR4302537.2123/94‑1 (MQ=60)

                                                                 GGGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGG                              <  SRR4302537.4741229/94‑1 (MQ=60)

                                                                  GGAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGT                             >  SRR4302537.5202940/1‑94 (MQ=60)

                                                                   GAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTT                            <  SRR4302537.931947/94‑1 (MQ=60)

                                                                   GAAATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTT                            <  SRR4302537.4596609/94‑1 (MQ=60)

                                                                      ATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCGGCGGACGGGTCGT                         >  SRR4302537.3886145/1‑94 (MQ=60)

                                                                      ATATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGT                         >  SRR4302537.3906829/1‑94 (MQ=60)

                                                                       TATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTT                        >  SRR4302537.3107198/1‑94 (MQ=60)

                                                                       TATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTT                        <  SRR4302537.6451523/94‑1 (MQ=60)

                                                                        ATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTA                       >  SRR4302537.4535031/1‑94 (MQ=60)

                                                                        ATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTA                       >  SRR4302537.69603/1‑94 (MQ=60)

                                                                        ATCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTA                       <  SRR4302537.5899113/94‑1 (MQ=60)

                                                                         TCAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAA                      >  SRR4302537.1357825/1‑94 (MQ=60)

                                                                          CAAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAG                     >  SRR4302537.3279826/1‑94 (MQ=60)

                                                                           AAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCATCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGT                    >  SRR4302537.6055419/1‑94 (MQ=60)

                                                                           AAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGT                    >  SRR4302537.6477532/1‑94 (MQ=60)

                                                                           AAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGT                    >  SRR4302537.2620693/1‑94 (MQ=60)

                                                                           AAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGT                    >  SRR4302537.3555011/1‑94 (MQ=60)

                                                                           AAACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGT                    <  SRR4302537.2025464/94‑1 (MQ=60)

                                                                            AACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTA                   >  SRR4302537.1791782/1‑94 (MQ=60)

                                                                             ACGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAA                  <  SRR4302537.5189004/94‑1 (MQ=60)

                                                                              CGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAG                 >  SRR4302537.5312137/1‑94 (MQ=60)

                                                                              CGTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAG                 <  SRR4302537.3395694/94‑1 (MQ=60)

                                                                               GTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGC                >  SRR4302537.824881/1‑94 (MQ=60)

                                                                               GTCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCATGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGC                <  SRR4302537.1422232/94‑1 (MQ=60)

                                                                                TCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCG               <  SRR4302537.2604838/94‑1 (MQ=60)

                                                                                TCCCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCG               <  SRR4302537.2977838/94‑1 (MQ=60)

                                                                                  CCGCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCA             <  SRR4302537.1709772/94‑1 (MQ=60)

                                                                                    GCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGG           >  SRR4302537.3531980/1‑94 (MQ=60)

                                                                                    GCAACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGAGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGG           <  SRR4302537.1197574/94‑1 (MQ=60)

                                                                                    CCCACCGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTTGGTTCGTTAAGTAAGCGCAGG           <  SRR4302537.6381683/94‑1 (MQ=60)

                                                                                         CGAGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACttc      >  SRR4302537.5020357/1‑91 (MQ=60)

                                                                                           AGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAA    >  SRR4302537.3420236/1‑94 (MQ=60)

                                                                                           AGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAA    <  SRR4302537.786915/94‑1 (MQ=60)

                                                                                           AGATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAA    >  SRR4302537.878073/1‑94 (MQ=60)

                                                                                            GATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAG   >  SRR4302537.2080169/1‑94 (MQ=60)

                                                                                            GATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAG   <  SRR4302537.5894348/94‑1 (MQ=60)

                                                                                            GATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAG   <  SRR4302537.791863/94‑1 (MQ=60)

                                                                                            GATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAG   >  SRR4302537.4673969/1‑94 (MQ=60)

                                                                                             ATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAGG  <  SRR4302537.3908664/94‑1 (MQ=60)

                                                                                             ATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAGG  >  SRR4302537.2780489/1‑94 (MQ=60)

                                                                                             ATCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAGG  >  SRR4302537.1655569/1‑94 (MQ=60)

GCCGCCGAGCGCGGAATCACCGCCGGTTGCCAGCACTTCAAACACGCCGCGACTTAAGCGCAGAATGGAAATATCAAACGTCCCGCCACCGAGGTCATAAACGGCGATCACGCCTTCCTGACCGGAATCCAGCCCGTAGGCGATAGCCGCAGCGGTCGGTTCGTTAAGTAAGCGCAGGACGTGAAGG  >  NC_000913/2656242‑2656428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`