Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,729,373 |
+C |
intergenic (‑195/+247) |
rrsG ← / ← clpB |
16S ribosomal RNA/ClpB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,729,371 | 1 | . | C | 99.6%
| 818.1
/ ‑4.3
| 246 | intergenic (‑193/+249) | rrsG/clpB | 16S ribosomal RNA/ClpB |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (102/143); total (102/144) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 251 total aligned reads displayed.
AAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTT‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTT > NC_000913/2729307‑2729458
|
aaaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCt > 2:8071357/1‑94 (MQ=0)
aaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt < 2:4445568/94‑1 (MQ=12)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCttt < 2:5120019/94‑1 (MQ=12)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCttt > 1:5586538/1‑94 (MQ=12)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCttt < 1:7226665/94‑1 (MQ=16)
tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtc < 2:3142859/94‑1 (MQ=255)
gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtct < 2:3484653/94‑1 (MQ=255)
gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtct > 2:7604661/1‑94 (MQ=255)
gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtct < 2:7911407/94‑1 (MQ=255)
ttAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtctc > 1:9062649/1‑94 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg < 1:4934206/94‑1 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg < 1:8453119/94‑1 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg < 2:10515501/94‑1 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGCGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg < 2:1259259/94‑1 (MQ=255)
aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt > 1:5506946/1‑94 (MQ=255)
aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt < 1:1833032/94‑1 (MQ=255)
aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt > 2:6712332/1‑94 (MQ=255)
agagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt < 1:8899365/94‑1 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg < 2:2182975/94‑1 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg < 2:4619279/94‑1 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg < 2:9143480/94‑1 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg < 2:6361877/94‑1 (MQ=255)
agCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga < 1:1715209/94‑1 (MQ=255)
agCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga > 2:1751635/1‑94 (MQ=255)
agCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga < 1:5006677/94‑1 (MQ=255)
gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgag < 1:8114498/94‑1 (MQ=255)
cAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgaga > 1:294045/1‑94 (MQ=255)
cgTGCCGCTTCGCTTTTTCTCAGCGCCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt < 2:1940538/93‑1 (MQ=17)
aGTGCCGTTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt > 1:3571392/1‑94 (MQ=255)
aGTGCCGCTTCGCTGTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTGCTTTTCTCTGTTGAGAt < 2:4983762/94‑1 (MQ=14)
gTGCCGCTTCGCTTTTTATCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAtt > 1:7021679/1‑94 (MQ=255)
ccGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc > 1:5914269/1‑94 (MQ=255)
ccGCTTCGCTTTTTCTCAGCGGCGCGGGGGGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc > 2:204445/1‑94 (MQ=255)
cgcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGCGATTCTCa > 2:1380909/1‑94 (MQ=255)
cgcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa < 2:7436088/94‑1 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg < 1:5196460/94‑1 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg > 2:2822855/1‑94 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg < 2:420823/94‑1 (MQ=255)
cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg < 1:8706318/94‑1 (MQ=255)
ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga < 1:986761/94‑1 (MQ=255)
ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga > 2:6260061/1‑94 (MQ=255)
ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga > 2:5940782/1‑94 (MQ=255)
ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga > 2:578238/1‑94 (MQ=255)
tcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag > 1:4846307/1‑94 (MQ=255)
tttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcc < 1:3497493/94‑1 (MQ=255)
ttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAccc < 1:9188496/94‑1 (MQ=255)
ttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAccc < 1:1716228/94‑1 (MQ=255)
tttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcccc < 1:10548746/94‑1 (MQ=255)
tttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcccc < 2:9513194/94‑1 (MQ=255)
ttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccg > 1:1264275/1‑94 (MQ=255)
tctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgc > 2:5428793/1‑94 (MQ=255)
ctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgcc < 1:4511816/94‑1 (MQ=255)
tcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgccg > 1:7969871/1‑94 (MQ=255)
aGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAc > 1:1436873/1‑94 (MQ=255)
aGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAc > 2:6908827/1‑94 (MQ=255)
gcggcgCGGGGTGTGCATAATACTCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAcc < 1:2824162/94‑1 (MQ=255)
cggcgCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAccc > 2:2647756/1‑94 (MQ=255)
ggcgCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcg < 1:4322351/94‑1 (MQ=255)
ggcgCGGGGTGTGCATAATACCCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcg < 1:3657559/94‑1 (MQ=255)
cgcgGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc < 2:1770098/94‑1 (MQ=255)
cgcgGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc < 1:4090824/94‑1 (MQ=255)
cgcgGAGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc < 1:8608019/94‑1 (MQ=255)
gcgGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcg < 2:4229372/94‑1 (MQ=255)
cgGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcgg > 2:4565566/1‑94 (MQ=255)
ggggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCggcggc < 2:8909671/94‑1 (MQ=255)
ggggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCggcggc < 2:6581566/94‑1 (MQ=255)
gggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGgcggcg < 1:9589327/94‑1 (MQ=255)
ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt > 1:2365985/1‑94 (MQ=255)
ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt > 2:6417017/1‑94 (MQ=255)
ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt > 1:6039398/1‑94 (MQ=255)
ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt < 1:613086/94‑1 (MQ=255)
ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt > 2:2235279/1‑94 (MQ=255)
ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt < 2:6499760/94‑1 (MQ=255)
gtgtGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg > 2:8336313/1‑94 (MQ=255)
gtgtGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg > 1:706329/1‑94 (MQ=255)
tgtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtgt > 2:5083885/1‑94 (MQ=255)
gtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGtt < 2:9892521/94‑1 (MQ=255)
gtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGtt < 1:10497426/94‑1 (MQ=255)
tgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt < 1:2157028/94‑1 (MQ=255)
tgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt > 1:2223872/1‑94 (MQ=255)
tgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt < 2:6480814/94‑1 (MQ=255)
tgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt < 1:9215795/94‑1 (MQ=255)
gCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTg > 1:6054065/1‑94 (MQ=255)
cATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGc < 2:3417054/94‑1 (MQ=255)
ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc < 2:6964215/94‑1 (MQ=255)
ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc > 2:10375563/1‑94 (MQ=255)
taataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCg < 2:6647003/94‑1 (MQ=255)
taataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCg < 2:328999/94‑1 (MQ=255)
taataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCg > 1:10280052/1‑94 (MQ=255)
taacaCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcca < 1:9429507/94‑2 (MQ=21)
aataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgt > 1:7520633/1‑94 (MQ=255)
ataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgtt > 2:7375416/1‑94 (MQ=255)
ataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgtt < 1:9276716/94‑1 (MQ=255)
taCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttg < 1:2592083/94‑1 (MQ=255)
aaCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttg < 1:10363918/93‑1 (MQ=255)
aCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgt > 1:6520115/1‑94 (MQ=255)
aCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgt < 1:5844438/94‑1 (MQ=255)
cGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgtt > 2:4010742/1‑94 (MQ=255)
cGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgtt > 2:8754555/1‑94 (MQ=255)
cGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgtt < 1:1923792/94‑1 (MQ=255)
|
AAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTT‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTT > NC_000913/2729307‑2729458
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑T‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA > NC_000913/2729309‑2729466
|
ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTT > SRR4302545.5734532/1‑94 (MQ=0)
ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTT < SRR4302545.7428477/94‑1 (MQ=0)
ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTT > SRR4302545.2400622/1‑94 (MQ=0)
ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTT > SRR4302545.7270564/1‑94 (MQ=0)
ATGGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTT < SRR4302545.7303458/94‑1 (MQ=0)
TTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTT < SRR4302545.10806468/94‑1 (MQ=0)
TTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTT < SRR4302545.2168648/94‑1 (MQ=0)
TTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTT < SRR4302545.1713837/94‑1 (MQ=0)
TGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTC < SRR4302545.10066400/94‑1 (MQ=2)
TGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTC > SRR4302545.9840332/1‑94 (MQ=2)
TGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTC > SRR4302545.5087506/1‑94 (MQ=2)
GTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCT < SRR4302545.5895635/94‑1 (MQ=5)
GTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTCCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCT < SRR4302545.5542163/94‑1 (MQ=4)
TTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTC > SRR4302545.9327335/1‑94 (MQ=7)
TAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCT < SRR4302545.506778/94‑1 (MQ=10)
AAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTG < SRR4302545.1706487/94‑1 (MQ=12)
AAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTG > SRR4302545.4923897/1‑94 (MQ=12)
AAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTG < SRR4302545.8697462/94‑1 (MQ=12)
AAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTG < SRR4302545.5059319/94‑1 (MQ=12)
AAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGT < SRR4302545.4418926/94‑1 (MQ=20)
AAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGT < SRR4302545.1877590/94‑1 (MQ=20)
AAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGT > SRR4302545.5652140/1‑94 (MQ=20)
AGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTT < SRR4302545.9158034/94‑1 (MQ=22)
GAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTG > SRR4302545.8227014/1‑94 (MQ=25)
GAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTG < SRR4302545.10844776/94‑1 (MQ=25)
AGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGA > SRR4302545.8100064/1‑94 (MQ=27)
AGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGA < SRR4302545.1756042/94‑1 (MQ=27)
AGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGA < SRR4302545.1756041/94‑1 (MQ=27)
AGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGA < SRR4302545.5133585/94‑1 (MQ=27)
AGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGA > SRR4302545.7962966/1‑94 (MQ=27)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302545.8348615/94‑1 (MQ=29)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302545.10640051/94‑1 (MQ=29)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302545.5727086/94‑1 (MQ=29)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302545.7246789/94‑1 (MQ=29)
CAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGA > SRR4302545.300191/1‑94 (MQ=32)
AGTGCCGTTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAT > SRR4302545.3658617/1‑94 (MQ=33)
AGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAT > SRR4302545.6129311/1‑94 (MQ=34)
AGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAT > SRR4302545.2771826/1‑94 (MQ=34)
AGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAT < SRR4302545.7010474/94‑1 (MQ=34)
GTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATT < SRR4302545.5772488/94‑1 (MQ=37)
GTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATT > SRR4302545.1862118/1‑94 (MQ=37)
GTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATT < SRR4302545.10712394/94‑1 (MQ=37)
GTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATT < SRR4302545.2188948/94‑1 (MQ=37)
GTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATT < SRR4302545.1952145/94‑1 (MQ=37)
GTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATT > SRR4302545.1862117/1‑94 (MQ=37)
GTGCCGCTTCGCTTTTTATCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATT > SRR4302545.7215502/1‑94 (MQ=35)
TGCCGATTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTC > SRR4302545.1230211/1‑94 (MQ=38)
GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCT < SRR4302545.8932903/94‑1 (MQ=42)
GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCT < SRR4302545.1127672/94‑1 (MQ=42)
GCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTC < SRR4302545.6250587/94‑1 (MQ=44)
CCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTC > SRR4302545.6073794/1‑94 (MQ=44)
CCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTC < SRR4302545.3693815/94‑1 (MQ=44)
CGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCA > SRR4302545.2602130/1‑94 (MQ=47)
CGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCA < SRR4302545.9247406/94‑1 (MQ=47)
GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAG > SRR4302545.8910329/1‑94 (MQ=49)
GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAG > SRR4302545.9023361/1‑94 (MQ=49)
GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAG < SRR4302545.2264267/94‑1 (MQ=49)
GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAG < SRR4302545.5330297/94‑1 (MQ=49)
GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAG > SRR4302545.6401609/1‑94 (MQ=49)
CTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGG < SRR4302545.8958880/94‑1 (MQ=51)
TTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGA < SRR4302545.1008712/94‑1 (MQ=54)
TCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG > SRR4302545.4969817/1‑94 (MQ=56)
GCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAA < SRR4302545.5013281/94‑1 (MQ=60)
GCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAA > SRR4302545.873380/1‑94 (MQ=60)
GCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAA < SRR4302545.9442219/94‑1 (MQ=60)
GCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAA < SRR4302545.4414608/94‑1 (MQ=60)
CTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAC < SRR4302545.4441316/94‑1 (MQ=60)
TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACC < SRR4302545.3583258/94‑1 (MQ=60)
TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACC < SRR4302545.6050789/94‑1 (MQ=60)
TTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCC < SRR4302545.1757085/94‑1 (MQ=60)
TTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCC < SRR4302545.9457906/94‑1 (MQ=60)
TTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCC < SRR4302545.10859467/94‑1 (MQ=60)
TTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCC < SRR4302545.2759859/94‑1 (MQ=60)
TTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCG > SRR4302545.1292562/1‑94 (MQ=60)
TCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGC > SRR4302545.8626307/1‑94 (MQ=60)
CTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCC < SRR4302545.4627304/94‑1 (MQ=60)
CTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCA > SRR4302545.6089037/1‑94 (MQ=60)
TCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCG > SRR4302545.8196440/1‑94 (MQ=60)
CAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGA > SRR4302545.3001505/1‑94 (MQ=60)
AGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAC > SRR4302545.1469532/1‑94 (MQ=60)
AGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAC > SRR4302545.5629249/1‑94 (MQ=60)
GCGGCGCGGGGTGTGCATAATACTCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACC < SRR4302545.2892500/94‑1 (MQ=60)
GCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACC < SRR4302545.10115229/94‑1 (MQ=60)
CGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCC < SRR4302545.2332330/94‑1 (MQ=60)
CGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCC > SRR4302545.4886042/1‑94 (MQ=60)
GGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCG < SRR4302545.4431308/94‑1 (MQ=60)
GGCGCGGGGTGTGCATAATACCCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCG < SRR4302545.3746910/94‑1 (MQ=60)
CGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGC < SRR4302545.7471960/94‑1 (MQ=60)
CGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGC < SRR4302545.4193244/94‑1 (MQ=60)
CGCGGAGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGC < SRR4302545.8857138/94‑1 (MQ=60)
GCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCG < SRR4302545.5234046/94‑1 (MQ=60)
GGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGC < SRR4302545.3689717/94‑1 (MQ=60)
GGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGC < SRR4302545.6233065/94‑1 (MQ=60)
GGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCG < SRR4302545.9871907/94‑1 (MQ=60)
GGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGT > SRR4302545.2423490/1‑94 (MQ=60)
GGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGT < SRR4302545.626876/94‑1 (MQ=60)
GGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGT > SRR4302545.6202727/1‑94 (MQ=60)
GGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGT > SRR4302545.6202728/1‑94 (MQ=60)
GTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTG > SRR4302545.6971046/1‑94 (MQ=60)
GTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTG > SRR4302545.7991557/1‑94 (MQ=60)
GTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTG > SRR4302545.722194/1‑94 (MQ=60)
GTGCATAATACGCCTCC‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTAGAGATTCTCAGGAGAACCCCACAGACCCGGCGGCGTGTT < SRR4302545.9539297/94‑1 (MQ=60)
GTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTT < SRR4302545.10806854/94‑1 (MQ=60)
TGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTT < SRR4302545.9485955/94‑1 (MQ=60)
TGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTT < SRR4302545.9485953/94‑1 (MQ=60)
TGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTT < SRR4302545.2209779/94‑1 (MQ=60)
TGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTT > SRR4302545.2278139/1‑94 (MQ=60)
TGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTT < SRR4302545.3599235/94‑1 (MQ=60)
GCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTG > SRR4302545.6218164/1‑94 (MQ=60)
CATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGC > SRR4302545.9223671/1‑94 (MQ=60)
ATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCC > SRR4302545.1340881/1‑94 (MQ=60)
TAATACGCCT‑TCCCGCTGCAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCA < SRR4302545.9706517/94‑1 (MQ=60)
TAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCG > SRR4302545.10583263/1‑94 (MQ=60)
TAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCG < SRR4302545.8646849/94‑1 (MQ=60)
TAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCG < SRR4302545.4039835/94‑1 (MQ=60)
TAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCA < SRR4302545.9706516/94‑1 (MQ=60)
TAACACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCA < SRR4302545.9706518/94‑1 (MQ=60)
AATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGT > SRR4302545.7733396/1‑94 (MQ=60)
AATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGT > SRR4302545.9468166/1‑94 (MQ=60)
ATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTT < SRR4302545.9548696/94‑1 (MQ=60)
TACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTG < SRR4302545.3374112/94‑1 (MQ=60)
TACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTG < SRR4302545.2654468/94‑1 (MQ=60)
AACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTG < SRR4302545.10669432/94‑1 (MQ=60)
ACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGT > SRR4302545.6698485/1‑94 (MQ=60)
ACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGT < SRR4302545.6001816/94‑1 (MQ=60)
CGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTT < SRR4302545.1971351/94‑1 (MQ=60)
CCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCC > SRR4302545.5926830/1‑94 (MQ=60)
CT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCG < SRR4302545.813958/94‑1 (MQ=60)
CT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCG > SRR4302545.8544644/1‑94 (MQ=60)
CT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCG > SRR4302545.8630410/1‑94 (MQ=60)
CT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCG > SRR4302545.895376/1‑94 (MQ=60)
CT‑TCCCGCTACAGAGGCAAGCATTTCTTTGCTTGTCTCTGTTGAGATTCTCAGGAGAACCGCGCGGACCCGGCGGCGTGTTTGCCGTTGTTCCG < SRR4302545.8956507/94‑1 (MQ=60)
ttcCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGT < SRR4302545.7653750/91‑1 (MQ=60)
C‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGT < SRR4302545.6102995/94‑1 (MQ=60)
CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTC > SRR4302545.1913468/1‑94 (MQ=60)
CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTC > SRR4302545.5543517/1‑94 (MQ=60)
CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA > SRR4302545.5553678/1‑94 (MQ=60)
CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA > SRR4302545.3019082/1‑94 (MQ=60)
|
ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑T‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA > NC_000913/2729309‑2729466
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
