Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,729,373 |
+C |
intergenic (‑195/+247) |
rrsG ← / ← clpB |
16S ribosomal RNA/ClpB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,729,371 | 1 | . | C | 100.0%
| 406.3
/ NA
| 122 | intergenic (‑193/+249) | rrsG/clpB | 16S ribosomal RNA/ClpB |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (58/64); total (58/64) |
Only 100 of 123 total aligned reads displayed.
AATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTT‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTT > NC_000913/2729308‑2729458
|
aaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCt < 1:2949714/93‑1 (MQ=0)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt > 2:392520/1‑93 (MQ=9)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt < 2:1502131/93‑1 (MQ=12)
ttGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCttt < 1:6358101/93‑1 (MQ=16)
tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt < 1:4378932/93‑1 (MQ=255)
tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt < 1:3117344/93‑1 (MQ=16)
tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt < 1:3064468/93‑1 (MQ=16)
tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt < 1:2393664/93‑1 (MQ=255)
gTTAAAGGGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtc > 2:6141458/1‑93 (MQ=255)
ttAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtct > 1:5152599/1‑93 (MQ=255)
tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtctc < 2:2383774/93‑1 (MQ=255)
tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtctc > 2:4614670/1‑93 (MQ=255)
tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtctc > 1:5686981/1‑93 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct > 2:228008/1‑93 (MQ=255)
aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg < 1:212262/93‑1 (MQ=255)
agagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt < 1:1546910/93‑1 (MQ=255)
agagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt < 2:5751876/93‑1 (MQ=255)
agagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt < 1:4043096/93‑1 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt < 2:5571945/93‑1 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt > 1:5389432/1‑93 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt > 1:438577/1‑93 (MQ=255)
gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga < 1:898856/93‑1 (MQ=255)
gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga < 1:1707164/93‑1 (MQ=255)
gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga > 2:3314515/1‑93 (MQ=255)
gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga < 1:3334057/93‑1 (MQ=255)
aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgaga < 1:1185924/93‑1 (MQ=255)
aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgaga < 2:5061094/93‑1 (MQ=255)
gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTTAGAt > 1:1729772/1‑93 (MQ=255)
gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt < 2:3884766/93‑1 (MQ=255)
gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt > 1:4338219/1‑93 (MQ=255)
gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt > 1:4444743/1‑93 (MQ=255)
gTGCAGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt > 2:3640863/1‑93 (MQ=255)
gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc < 1:4618622/93‑1 (MQ=255)
gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc < 2:3580917/93‑1 (MQ=255)
gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc < 1:4576752/93‑1 (MQ=255)
gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc < 2:3051607/93‑1 (MQ=255)
ccGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtct > 1:4894703/1‑93 (MQ=255)
ccGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtct < 1:3384195/93‑1 (MQ=255)
cgcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc < 1:1870971/93‑1 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa < 2:448951/93‑1 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa < 2:2915213/93‑1 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa < 1:6199775/93‑1 (MQ=255)
cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg < 2:1151970/93‑1 (MQ=255)
cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg > 1:575127/1‑93 (MQ=255)
ttcgcttTTTCCCGGCGGCG‑GGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga < 1:4460738/93‑1 (MQ=18)
tcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga > 2:3656230/1‑93 (MQ=255)
tcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga > 1:1593655/1‑93 (MQ=255)
cgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag > 2:5719341/1‑93 (MQ=255)
cgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag > 1:5942350/1‑93 (MQ=255)
cgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag > 1:4021681/1‑93 (MQ=255)
cttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGaa < 2:2421141/93‑1 (MQ=255)
tttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAc > 1:3657323/1‑93 (MQ=255)
tttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAc > 1:1764698/1‑93 (MQ=255)
tttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAc < 2:3917515/93‑1 (MQ=255)
ttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcc < 2:4008234/93‑1 (MQ=255)
tttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAccc < 2:4550012/93‑1 (MQ=255)
ttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcccc < 1:2071866/93‑1 (MQ=255)
ttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcccc < 2:28551/93‑1 (MQ=255)
ctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgc < 2:5013584/93‑1 (MQ=255)
ctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgc > 2:5980032/1‑93 (MQ=255)
ctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgc > 1:316161/1‑93 (MQ=255)
aGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGa > 1:6389522/1‑93 (MQ=255)
gcggcgCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCTGGAGAACCCCGCCGAc > 1:6370687/1‑93 (MQ=255)
ggcgCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAccc < 2:2821365/93‑1 (MQ=255)
ggcgCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAccc < 2:3655881/93‑1 (MQ=255)
gcgcGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcg > 1:1343060/1‑93 (MQ=255)
cgcgGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcgg > 1:2867747/1‑93 (MQ=255)
gcgGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGACCCCCGCCGACCcggc < 2:3303379/93‑1 (MQ=255)
gcgGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc > 2:6462334/1‑93 (MQ=255)
cgGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcg > 2:3266685/1‑93 (MQ=255)
gggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCggcggc > 2:4021022/1‑93 (MQ=255)
ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGgcggcg < 2:4384196/93‑1 (MQ=255)
ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGgcggcg < 2:4539887/93‑1 (MQ=255)
gtgtGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAACCGGCGGCgt > 1:3235013/1‑93 (MQ=255)
tgtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg > 1:3131935/1‑93 (MQ=255)
tgtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg < 2:4306864/93‑1 (MQ=255)
tgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGtt < 1:1606598/93‑1 (MQ=255)
tgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGtt > 2:3301362/1‑93 (MQ=255)
tgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGtt < 2:4777310/93‑1 (MQ=255)
gCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt > 1:4326145/1‑93 (MQ=255)
ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGc < 2:4345345/93‑1 (MQ=255)
ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGc < 2:6435894/93‑1 (MQ=255)
ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGc > 2:4927664/1‑93 (MQ=255)
ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGc < 1:5843016/93‑1 (MQ=255)
taataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACGCCGCCGACGCGGCGGCGTGCTTGcc > 2:5011011/1‑93 (MQ=21)
taataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc > 1:3684404/1‑93 (MQ=255)
taataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc > 1:2624171/1‑93 (MQ=255)
aataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCg > 1:1080764/1‑93 (MQ=255)
aataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCg < 2:1076590/93‑1 (MQ=255)
ataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgt < 1:1359139/93‑1 (MQ=255)
ataCGCCTTCCCGATACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgt > 2:4610127/1‑93 (MQ=255)
taCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgtt > 1:4969265/1‑93 (MQ=255)
taCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgtt < 1:3063067/93‑1 (MQ=255)
aCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttg > 1:686172/1‑93 (MQ=255)
cGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgt < 2:5760827/93‑1 (MQ=255)
cGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgt < 2:2349578/93‑1 (MQ=255)
cGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgt > 2:2483193/1‑93 (MQ=255)
gCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgtt > 1:3454910/1‑93 (MQ=255)
gCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgtt > 1:1189209/1‑93 (MQ=255)
gCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgtt < 1:4589747/93‑1 (MQ=255)
|
AATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTT‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTT > NC_000913/2729308‑2729458
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑T‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA > NC_000913/2729308‑2729466
|
AATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTT > SRR4302537.4714942/1‑94 (MQ=0)
AATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTT < SRR4302537.2970409/94‑1 (MQ=0)
ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTT > SRR4302537.4286784/1‑94 (MQ=0)
TTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTT < SRR4302537.6401489/94‑1 (MQ=0)
TTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTT < SRR4302537.1469363/94‑1 (MQ=0)
TGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTC < SRR4302537.2410522/94‑1 (MQ=2)
TGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTC < SRR4302537.3085815/94‑1 (MQ=2)
TGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTC < SRR4302537.3139119/94‑1 (MQ=2)
TGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTC < SRR4302537.4409159/94‑1 (MQ=2)
GTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCT > SRR4302537.5188102/1‑94 (MQ=5)
TTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTC > SRR4302537.5725880/1‑94 (MQ=7)
AAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTG < SRR4302537.6170752/94‑1 (MQ=12)
AAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGT < SRR4302537.213777/94‑1 (MQ=20)
AGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTT < SRR4302537.1557709/94‑1 (MQ=22)
AGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTT > SRR4302537.5426256/1‑94 (MQ=22)
AGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTT < SRR4302537.4071369/94‑1 (MQ=22)
AGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTT > SRR4302537.441630/1‑94 (MQ=22)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302537.3357646/94‑1 (MQ=29)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302537.905054/94‑1 (MQ=29)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302537.1719097/94‑1 (MQ=29)
AGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTTAGAT > SRR4302537.1741847/1‑94 (MQ=21)
AGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAT > SRR4302537.4475442/1‑94 (MQ=34)
AGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAT < SRR4302537.1194165/94‑1 (MQ=34)
AGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAT > SRR4302537.4368328/1‑94 (MQ=34)
TGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTC < SRR4302537.3161884/94‑1 (MQ=39)
GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCT < SRR4302537.4650609/94‑1 (MQ=42)
GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCT < SRR4302537.4608427/94‑1 (MQ=42)
GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCT > SRR4302537.4928500/1‑94 (MQ=42)
CCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTC < SRR4302537.3408171/94‑1 (MQ=44)
CGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCA < SRR4302537.1883990/94‑1 (MQ=47)
GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAG > SRR4302537.579073/1‑94 (MQ=49)
GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAG < SRR4302537.6242501/94‑1 (MQ=49)
TTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGA > SRR4302537.1604794/1‑94 (MQ=54)
TTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGA > SRR4302537.1731764/1‑94 (MQ=54)
TTCGCTTTTTCCCGGCGGCG‑GGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG < SRR4302537.4491576/94‑1 (MQ=49)
TCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG > SRR4302537.5983135/1‑94 (MQ=56)
TCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG > SRR4302537.4049839/1‑94 (MQ=56)
CTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAC > SRR4302537.3683062/1‑94 (MQ=60)
CTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAC > SRR4302537.1776989/1‑94 (MQ=60)
TTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCC < SRR4302537.4429382/94‑1 (MQ=60)
TTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCG < SRR4302537.2086461/94‑1 (MQ=60)
TCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGC > SRR4302537.318356/1‑94 (MQ=60)
CAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGA > SRR4302537.6433058/1‑94 (MQ=60)
AGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCTGGAGAACCCCGCCGAC > SRR4302537.6414134/1‑94 (MQ=60)
GCNGCGNNGGGTGTGCATAATNNGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACC < SRR4302537.5716750/94‑1 (MQ=60)
CGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCC < SRR4302537.744130/94‑1 (MQ=60)
GGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCG > SRR4302537.1352414/1‑94 (MQ=60)
GCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGG > SRR4302537.2887876/1‑94 (MQ=60)
GGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAACCGGCGGCGT > SRR4302537.3257816/1‑94 (MQ=60)
GTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTG > SRR4302537.3153909/1‑94 (MQ=60)
GTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTT > SRR4302537.359367/1‑94 (MQ=60)
TGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTT > SRR4302537.4356220/1‑94 (MQ=60)
TGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTT < SRR4302537.1617832/94‑1 (MQ=60)
ATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCC < SRR4302537.5883079/94‑1 (MQ=60)
ATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCC > SRR4302537.2642561/1‑94 (MQ=60)
ATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCC > SRR4302537.3710317/1‑94 (MQ=60)
TAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCG > SRR4302537.1088226/1‑94 (MQ=60)
TAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCG < SRR4302537.2978938/94‑1 (MQ=60)
ATACGCCTCC‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTT < SRR4302537.2255977/94‑1 (MQ=60)
ATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTT > SRR4302537.5003513/1‑94 (MQ=60)
ATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTT < SRR4302537.1368605/94‑1 (MQ=60)
TACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTG < SRR4302537.3084410/94‑1 (MQ=60)
TACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTG > SRR4302537.690877/1‑94 (MQ=60)
CGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTT > SRR4302537.3479348/1‑94 (MQ=60)
CGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTT > SRR4302537.1197470/1‑94 (MQ=60)
GCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTC > SRR4302537.5710185/1‑94 (MQ=60)
GCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTC < SRR4302537.4621488/94‑1 (MQ=60)
CCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCC < SRR4302537.684447/94‑1 (MQ=60)
CT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCG > SRR4302537.1121151/1‑94 (MQ=60)
C‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGT > SRR4302537.2733518/1‑94 (MQ=60)
CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA > SRR4302537.1357062/1‑94 (MQ=60)
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AATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑T‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA > NC_000913/2729308‑2729466
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
