Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,820,144 Δ1 bp intergenic (+24/+18) b4542 → / ← oraA hypothetical protein/OraA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,820,1430G.99.7% 1788.6 / ‑1.8 392intergenic (+23/+19)b4542/oraAhypothetical protein/OraA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base . (205/185);  minor base A (0/1);  total (205/187)
Fisher's exact test for biased strand distribution p-value = 4.76e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01

Only 100 of 418 total aligned reads displayed.

AGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCT  >  NC_000913/2820050‑2820232
                                                                                             |                                                                                         
aGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAg                                                                                           <  1:1402648/94‑1 (MQ=255)
aGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAg                                                                                           >  1:2762173/1‑94 (MQ=255)
 gCTAACGAAATATCTCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgt                                                                                          >  2:5081390/1‑93 (MQ=255)
  cTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgta                                                                                         >  1:3532192/1‑92 (MQ=255)
   tAACGAAATACCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGGTTTCTTGACTGGGAAgtaa                                                                                        >  1:9355080/1‑91 (MQ=255)
      cGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAAt                                                                                    <  2:5555890/94‑1 (MQ=255)
       gAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATa                                                                                   >  1:914947/1‑94 (MQ=255)
       gAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATa                                                                                   >  2:614911/1‑94 (MQ=255)
       gAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATa                                                                                   >  2:3746820/1‑94 (MQ=255)
        aaaTATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATAc                                                                                  <  1:7490001/94‑1 (MQ=255)
          atatCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCg                                                                                >  1:9828815/1‑94 (MQ=255)
           tatCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGTCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGt                                                                               <  2:3145903/94‑1 (MQ=255)
             tCGCCACCAGCTTCAGCGTGTCTGATCCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTag                                                                             <  1:5485468/94‑2 (MQ=255)
              cGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATg                                                                            <  1:5249840/94‑1 (MQ=255)
               gCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGc                                                                           <  1:9432413/94‑1 (MQ=255)
               gCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGc                                                                           >  2:6500638/1‑94 (MQ=255)
               gCCACCAGCTCCAGCGTGTCTTAACCGCCCGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGc                                                                           >  2:6318903/1‑94 (MQ=255)
                 caccaGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGt                                                                         >  1:10301349/1‑94 (MQ=255)
                 caccaGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGt                                                                         >  2:8270452/1‑94 (MQ=255)
                  cccaGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGtt                                                                        <  2:8417594/93‑1 (MQ=255)
                    caGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCa                                                                      >  2:660001/1‑94 (MQ=255)
                     aGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAg                                                                     >  2:5757938/1‑94 (MQ=255)
                     aGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAg                                                                     >  2:4614496/1‑94 (MQ=255)
                     aGCTCCAGCGTGCCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCat                                                                     >  1:1734985/1‑93 (MQ=255)
                      gCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGt                                                                    >  2:2615429/1‑94 (MQ=255)
                       cTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTc                                                                   <  1:3200298/94‑1 (MQ=255)
                       cTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTc                                                                   <  1:5676031/94‑1 (MQ=255)
                       cTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTc                                                                   >  2:3326903/1‑94 (MQ=255)
                         ccAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCgg                                                                 >  1:8769229/1‑94 (MQ=255)
                           aGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTAGGCa                                                               >  1:10186017/1‑94 (MQ=255)
                              gtgtCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCaaaa                                                            >  2:6672100/1‑94 (MQ=255)
                                 tCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAAttt                                                         <  1:6836178/94‑1 (MQ=255)
                                  cTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTc                                                        >  1:2315736/1‑94 (MQ=255)
                                  cTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTc                                                        >  2:713712/1‑94 (MQ=255)
                                   ttAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCg                                                       <  1:5065296/94‑1 (MQ=255)
                                     aaCCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGAAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGcc                                                     <  2:1480018/94‑1 (MQ=255)
                                      aCCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCa                                                    >  1:485977/1‑94 (MQ=255)
                                       ccgccgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCaa                                                   >  2:7635319/1‑94 (MQ=255)
                                         gccgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGATGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAt                                                 <  1:4333135/94‑1 (MQ=255)
                                           cgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtct                                               >  2:4984735/1‑94 (MQ=255)
                                            gggCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtctc                                              >  2:3469105/1‑94 (MQ=255)
                                              gCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCt                                            <  1:4135810/94‑1 (MQ=255)
                                              gCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCt                                            >  2:1750649/1‑94 (MQ=255)
                                              gCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCt                                            >  1:3429092/1‑94 (MQ=255)
                                               cTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                                           >  1:7797778/1‑94 (MQ=255)
                                               cTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                                           >  1:4463642/1‑94 (MQ=255)
                                               cTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGCTCAGTCGGCAAAATTTCGCCAAATCTCCTg                                           >  1:287368/1‑94 (MQ=255)
                                                tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTgg                                          <  1:6310332/94‑1 (MQ=255)
                                                tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTgg                                          <  2:6857831/94‑1 (MQ=255)
                                                tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTgg                                          <  1:7077364/94‑1 (MQ=255)
                                                tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTgg                                          >  1:3904264/1‑94 (MQ=255)
                                                 ggTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGa                                         <  1:2542578/94‑1 (MQ=255)
                                                  gTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGat                                        <  2:6354109/94‑1 (MQ=255)
                                                  gTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGat                                        <  2:2932494/94‑1 (MQ=255)
                                                  gTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGat                                        <  2:2021482/94‑1 (MQ=255)
                                                   tAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGata                                       <  1:2737392/94‑1 (MQ=255)
                                                    aaCTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGatat                                      >  1:6655320/1‑94 (MQ=255)
                                                     aCTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATc                                     <  2:1399044/94‑1 (MQ=255)
                                                       tGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCtt                                   >  2:10073146/1‑94 (MQ=255)
                                                        gAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTc                                  <  2:2427105/94‑1 (MQ=255)
                                                         aaaaGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTcc                                 >  2:1895625/1‑94 (MQ=255)
                                                           aaGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCAt                               >  1:7609056/1‑94 (MQ=255)
                                                           aaGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCAt                               <  1:9567085/94‑1 (MQ=255)
                                                            aGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATc                              >  2:921399/1‑94 (MQ=255)
                                                             gTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCa                             >  2:3562376/1‑94 (MQ=255)
                                                              tGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAg                            <  1:6191773/94‑1 (MQ=255)
                                                               gggAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGa                           >  2:483431/1‑94 (MQ=255)
                                                               gggAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGa                           >  2:405980/1‑94 (MQ=255)
                                                                ggAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAt                          >  2:7437370/1‑94 (MQ=255)
                                                                ggAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAt                          <  2:10523015/94‑1 (MQ=255)
                                                                ggAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAt                          >  2:2265327/1‑94 (MQ=255)
                                                                 gAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa                         <  1:8577057/94‑1 (MQ=255)
                                                                 gAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa                         >  2:9082466/1‑94 (MQ=255)
                                                                  aaTAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAg                        >  2:5909326/1‑94 (MQ=255)
                                                                   ataagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGc                       >  1:9882594/1‑94 (MQ=255)
                                                                    taagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGcc                      >  2:4411681/1‑94 (MQ=255)
                                                                     aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCa                     <  1:1271314/94‑1 (MQ=255)
                                                                      agataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAc                    >  1:602664/1‑94 (MQ=255)
                                                                      agataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAc                    <  2:10155003/94‑1 (MQ=255)
                                                                      agataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAc                    >  1:901538/1‑94 (MQ=255)
                                                                       gataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACg                   >  2:9883906/1‑94 (MQ=255)
                                                                        ataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGa                  <  2:1099136/94‑1 (MQ=255)
                                                                         taagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGAt                 <  1:1216017/94‑1 (MQ=255)
                                                                         taagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGAt                 <  2:9547426/94‑1 (MQ=255)
                                                                         taagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGAt                 >  1:7982799/1‑94 (MQ=255)
                                                                             ttttCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATagag             <  1:1520412/94‑1 (MQ=255)
                                                                             ttttCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATagag             >  1:2253313/1‑94 (MQ=255)
                                                                                tCTTGACTGGGGAGTCCAGTACCGTATGCGTTCAGTCGGCAAATTTTCGCCGAATCTCCTGGATATCAACCATCGGATAGCCACGGTAGAGcgg          <  1:8081370/94‑3 (MQ=255)
                                                                                tCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAg          >  1:10585954/1‑94 (MQ=255)
                                                                                tCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAg          <  1:2911293/94‑1 (MQ=255)
                                                                                 cTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGa         >  1:7844426/1‑94 (MQ=255)
                                                                                 cTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGa         <  2:7813655/94‑1 (MQ=255)
                                                                                 cTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGa         >  2:8503791/1‑94 (MQ=255)
                                                                                 cTTGACTGGAAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGa         <  2:8949035/94‑1 (MQ=255)
                                                                                  ttGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGaa        >  1:8336894/1‑94 (MQ=255)
                                                                                    gACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGaaaa      <  1:647590/94‑1 (MQ=255)
                                                                                     aCTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAAc     >  2:1325966/1‑94 (MQ=255)
                                                                                      cTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACg    >  1:5090092/1‑94 (MQ=255)
                                                                                       tGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGc   >  1:2076184/1‑94 (MQ=255)
                                                                                       tGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGc   >  2:41495/1‑94 (MQ=255)
                                                                                             |                                                                                         
AGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCT  >  NC_000913/2820050‑2820232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 223 total aligned reads displayed.
GCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATC  >  NC_000913/2820051‑2820237
                                                                                             |                                                                                             
GCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGT                                                                                               >  SRR4302545.6424196/1‑94 (MQ=60)
  TAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAA                                                                                            >  SRR4302545.2807924/1‑94 (MQ=60)
  TAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAA                                                                                            <  SRR4302545.9479982/94‑1 (MQ=60)
  TAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAA                                                                                            >  SRR4302545.5243342/1‑94 (MQ=60)
  TAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGCGAAGTAA                                                                                            >  SRR4302545.2807925/1‑94 (MQ=60)
      GAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATA                                                                                        <  SRR4302545.9104956/94‑1 (MQ=60)
      GAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATA                                                                                        >  SRR4302545.935475/1‑94 (MQ=60)
       AAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATAC                                                                                       >  SRR4302545.9718967/1‑94 (MQ=60)
       AAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATAC                                                                                       >  SRR4302545.4526349/1‑94 (MQ=60)
       AAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATAC                                                                                       >  SRR4302545.5658770/1‑94 (MQ=60)
        AATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACC                                                                                      >  SRR4302545.7789843/1‑94 (MQ=60)
        AATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACC                                                                                      >  SRR4302545.1859038/1‑94 (MQ=60)
         ATATCGCCGCCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCG                                                                                     <  SRR4302545.7812888/94‑1 (MQ=60)
         ATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCG                                                                                     >  SRR4302545.10120848/1‑94 (MQ=60)
         ATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCG                                                                                     >  SRR4302545.10120846/1‑94 (MQ=60)
         ATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCG                                                                                     >  SRR4302545.5485295/1‑94 (MQ=60)
          TATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGT                                                                                    <  SRR4302545.3610257/94‑1 (MQ=60)
           ATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTA                                                                                   >  SRR4302545.2145072/1‑94 (MQ=60)
            TCGCCACCAGCTTCAGCGTGTCTGATCCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTAG                                                                                  <  SRR4302545.5629628/94‑1 (MQ=60)
            TCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTAT                                                                                  <  SRR4302545.654969/94‑1 (MQ=60)
             CGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATG                                                                                 <  SRR4302545.4714453/94‑1 (MQ=60)
             CGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATG                                                                                 <  SRR4302545.5385446/94‑1 (MQ=60)
             CGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATG                                                                                 >  SRR4302545.3933104/1‑94 (MQ=60)
              GCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGC                                                                                <  SRR4302545.9002133/94‑1 (MQ=60)
              GCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGC                                                                                <  SRR4302545.9709528/94‑1 (MQ=60)
                CACCCGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGT                                                                              <  SRR4302545.3491066/94‑1 (MQ=60)
                CACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGT                                                                              >  SRR4302545.10605139/1‑94 (MQ=60)
                CACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGT                                                                              <  SRR4302545.3491067/94‑1 (MQ=60)
                CACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGT                                                                              >  SRR4302545.10488231/1‑94 (MQ=60)
                CACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGT                                                                              >  SRR4302545.10019347/1‑94 (MQ=60)
                 CCCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTT                                                                             <  SRR4302545.1316204/94‑1 (MQ=60)
                 ACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTT                                                                             >  SRR4302545.4066855/1‑94 (MQ=60)
                  CCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTC                                                                            <  SRR4302545.1267272/94‑1 (MQ=60)
                   CAGCTCCAGCTTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCA                                                                           <  SRR4302545.10654697/94‑1 (MQ=60)
                   CAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCA                                                                           <  SRR4302545.5167798/94‑1 (MQ=60)
                   CAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCA                                                                           <  SRR4302545.9500369/94‑1 (MQ=60)
                      CTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTC                                                                        <  SRR4302545.3278739/94‑1 (MQ=60)
                      CTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTC                                                                        >  SRR4302545.7890260/1‑94 (MQ=60)
                      CTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTC                                                                        <  SRR4302545.5827674/94‑1 (MQ=60)
                      CTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTC                                                                        >  SRR4302545.2855798/1‑94 (MQ=60)
                       TCCAGCGTGTCTTACCCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCG                                                                       <  SRR4302545.4434709/94‑1 (MQ=60)
                       TCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCG                                                                       <  SRR4302545.1484000/94‑1 (MQ=60)
                       TCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCG                                                                       >  SRR4302545.235304/1‑94 (MQ=60)
                       TCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCG                                                                       <  SRR4302545.2961494/94‑1 (MQ=60)
                       TCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCG                                                                       >  SRR4302545.1573349/1‑94 (MQ=60)
                        CCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGG                                                                      >  SRR4302545.4871529/1‑94 (MQ=60)
                        CCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGG                                                                      >  SRR4302545.9023714/1‑94 (MQ=60)
                         CAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGC                                                                     <  SRR4302545.3575031/94‑1 (MQ=60)
                          AGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCA                                                                    >  SRR4302545.5986276/1‑94 (MQ=60)
                          AGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCA                                                                    >  SRR4302545.9170667/1‑94 (MQ=60)
                          AGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCA                                                                    >  SRR4302545.6618043/1‑94 (MQ=60)
                          AGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCA                                                                    <  SRR4302545.8664295/94‑1 (MQ=60)
                          AGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTAGGCA                                                                    >  SRR4302545.10487016/1‑94 (MQ=60)
                           GCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAA                                                                   <  SRR4302545.8642426/94‑1 (MQ=60)
                            CGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAA                                                                  >  SRR4302545.1741850/1‑94 (MQ=60)
                             GTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAA                                                                 <  SRR4302545.3041999/94‑1 (MQ=60)
                             GTGTCTTAACCGCCGGGCTGGGAACTGAAAAGTGGGAATAAGATAAGATTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAA                                                                 >  SRR4302545.7052601/1‑94 (MQ=60)
                              TGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAAT                                                                >  SRR4302545.8450586/1‑94 (MQ=60)
                               GTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATT                                                               <  SRR4302545.5449938/94‑1 (MQ=60)
                                TCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTT                                                              >  SRR4302545.957397/1‑94 (MQ=60)
                                TCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTT                                                              <  SRR4302545.7024001/94‑1 (MQ=60)
                                TCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTT                                                              <  SRR4302545.2732728/94‑1 (MQ=60)
                                 CTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTC                                                             >  SRR4302545.2372146/1‑94 (MQ=60)
                                 CTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTC                                                             >  SRR4302545.5424275/1‑94 (MQ=60)
                                 CTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAACAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTC                                                             >  SRR4302545.9822429/1‑94 (MQ=60)
                                  TTAACCGCCGGGCTGGTAACTGAAAATTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCG                                                            <  SRR4302545.5208786/94‑1 (MQ=60)
                                  TTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCG                                                            <  SRR4302545.5208787/94‑1 (MQ=60)
                                  TTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCG                                                            <  SRR4302545.5194262/94‑1 (MQ=60)
                                    AACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCC                                                          <  SRR4302545.8024433/94‑1 (MQ=60)
                                     ACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCA                                                         >  SRR4302545.496812/1‑94 (MQ=60)
                                     ACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGCTCAGTCGGCAAAATTTCGCCA                                                         <  SRR4302545.1977266/94‑1 (MQ=60)
                                       CGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAA                                                       <  SRR4302545.2230692/94‑1 (MQ=60)
                                        GCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAT                                                      <  SRR4302545.1610798/94‑1 (MQ=60)
                                        GCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGATGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAT                                                      <  SRR4302545.4442455/94‑1 (MQ=60)
                                         CCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATC                                                     >  SRR4302545.2973199/1‑94 (MQ=60)
                                          CGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCT                                                    <  SRR4302545.2443018/94‑1 (MQ=60)
                                            GGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCC                                                  <  SRR4302545.7014476/94‑1 (MQ=60)
                                            GGCTGGTAACTGAAAAGCGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCC                                                  >  SRR4302545.2697032/1‑94 (MQ=60)
                                             GCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCT                                                 >  SRR4302545.3512893/1‑94 (MQ=60)
                                             GCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCT                                                 >  SRR4302545.7899303/1‑94 (MQ=60)
                                             GCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCT                                                 <  SRR4302545.4371108/94‑1 (MQ=60)
                                             GCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCT                                                 <  SRR4302545.6830872/94‑1 (MQ=60)
                                              CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTG                                                >  SRR4302545.4577498/1‑94 (MQ=60)
                                              CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTG                                                >  SRR4302545.6251256/1‑94 (MQ=60)
                                              CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTG                                                >  SRR4302545.8018538/1‑94 (MQ=60)
                                              CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTG                                                <  SRR4302545.10257725/94‑1 (MQ=60)
                                              CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTG                                                <  SRR4302545.10160824/94‑1 (MQ=60)
                                              CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTG                                                <  SRR4302545.3586931/94‑1 (MQ=60)
                                              CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTG                                                >  SRR4302545.2903516/1‑94 (MQ=60)
                                              CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTG                                                <  SRR4302545.6877731/94‑1 (MQ=60)
                                              CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGCTCAGTCGGCAAAATTTCGCCAAATCTCCTG                                                >  SRR4302545.293387/1‑94 (MQ=60)
                                               TGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGG                                               <  SRR4302545.6482374/94‑1 (MQ=60)
                                               TGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGG                                               >  SRR4302545.148833/1‑94 (MQ=60)
                                               TGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGG                                               <  SRR4302545.7273235/94‑1 (MQ=60)
                                               TGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGG                                               >  SRR4302545.4001709/1‑94 (MQ=60)
                                                GGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGA                                              <  SRR4302545.2603954/94‑1 (MQ=60)
                                                 GTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGAT                                             <  SRR4302545.5654854/94‑1 (MQ=60)
                                                   AACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATAT                                           <  SRR4302545.10097519/94‑1 (MQ=60)
                                                   AACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATAT                                           >  SRR4302545.6837794/1‑94 (MQ=60)
                                                   AACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATAT                                           >  SRR4302545.6837796/1‑94 (MQ=60)
                                                   AACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATAT                                           <  SRR4302545.10076994/94‑1 (MQ=60)
                                                    ACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATC                                          <  SRR4302545.7507165/94‑1 (MQ=60)
                                                    ACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATC                                          >  SRR4302545.9477475/1‑94 (MQ=60)
                                                     CTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCT                                         <  SRR4302545.4442679/94‑1 (MQ=60)
                                                     CTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCT                                         >  SRR4302545.443326/1‑94 (MQ=60)
                                                     CTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCT                                         <  SRR4302545.8157858/94‑1 (MQ=60)
                                                     CTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCT                                         <  SRR4302545.7726146/94‑1 (MQ=60)
                                                      TGAAAAGTGGGAATAAGATAAGTTTTCTTGCCTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTC                                        >  SRR4302545.3080368/1‑94 (MQ=60)
                                                       GAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTC                                       >  SRR4302545.7522020/1‑94 (MQ=60)
                                                       GAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGCCAAAATTTCGCCAAATCTCCTGGATATCTTC                                       >  SRR4302545.1398092/1‑94 (MQ=60)
                                                        AAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCC                                      <  SRR4302545.9818224/94‑1 (MQ=60)
                                                          AAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCAT                                    >  SRR4302545.7824306/1‑94 (MQ=60)
                                                          AAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCAT                                    <  SRR4302545.9849094/94‑1 (MQ=60)
                                                          AAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCAT                                    >  SRR4302545.5804956/1‑94 (MQ=60)
                                                            GTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCA                                  >  SRR4302545.2292376/1‑94 (MQ=60)
                                                            GTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCA                                  >  SRR4302545.416461/1‑94 (MQ=60)
                                                             TGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAG                                 <  SRR4302545.6360287/94‑1 (MQ=60)
                                                               GGAATAATATAACTTTTCTTGACTCGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAT                               <  SRR4302545.7227913/94‑1 (MQ=60)
                                                               GGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAT                               <  SRR4302545.8029212/94‑1 (MQ=60)
                                                               GGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAT                               <  SRR4302545.2711241/94‑1 (MQ=60)
                                                               GGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAT                               <  SRR4302545.9633802/94‑1 (MQ=60)
                                                               GGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAT                               <  SRR4302545.6284206/94‑1 (MQ=60)
                                                                GAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATA                              <  SRR4302545.8825120/94‑1 (MQ=60)
                                                                 AATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAG                             >  SRR4302545.5874923/1‑94 (MQ=60)
                                                                  ATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGC                            >  SRR4302545.5865220/1‑94 (MQ=60)
                                                                  ATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGC                            >  SRR4302545.10176239/1‑94 (MQ=60)
                                                                   TAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCC                           >  SRR4302545.10730752/1‑94 (MQ=60)
                                                                   TAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCC                           <  SRR4302545.2928302/94‑1 (MQ=60)
                                                                   TAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCC                           >  SRR4302545.9131985/1‑94 (MQ=60)
                                                                    AAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCA                          <  SRR4302545.1299710/94‑1 (MQ=60)
                                                                    AAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCA                          >  SRR4302545.6846048/1‑94 (MQ=60)
                                                                     AGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC                         >  SRR4302545.7969814/1‑94 (MQ=60)
                                                                     AGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC                         >  SRR4302545.616235/1‑94 (MQ=60)
                                                                     AGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC                         >  SRR4302545.1867371/1‑94 (MQ=60)
                                                                     AGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC                         >  SRR4302545.2815626/1‑94 (MQ=60)
                                                                     AGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC                         >  SRR4302545.4322062/1‑94 (MQ=60)
                                                                     AGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC                         >  SRR4302545.921739/1‑94 (MQ=60)
                                                                     AGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC                         >  SRR4302545.5287976/1‑94 (MQ=60)
                                                                      GATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACG                        >  SRR4302545.10717469/1‑94 (MQ=60)
                                                                      GATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACG                        <  SRR4302545.1265793/94‑1 (MQ=60)
                                                                      GATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACG                        >  SRR4302545.1050019/1‑94 (MQ=60)
                                                                      GATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACG                        <  SRR4302545.2554523/94‑1 (MQ=60)
                                                                      GATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACG                        >  SRR4302545.8993969/1‑94 (MQ=60)
                                                                      GATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACG                        <  SRR4302545.6762472/94‑1 (MQ=60)
                                                                      GATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACG                        >  SRR4302545.4933563/1‑94 (MQ=60)
                                                                       ATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGA                       >  SRR4302545.1507660/1‑94 (MQ=60)
                                                                        TAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGAT                      <  SRR4302545.1243585/94‑1 (MQ=60)
                                                                        TAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGAT                      >  SRR4302545.8162958/1‑94 (MQ=60)
                                                                        TAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGAT                      >  SRR4302545.8209822/1‑94 (MQ=60)
                                                                         AAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATA                     <  SRR4302545.10530041/94‑1 (MQ=60)
                                                                           GTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGA                   >  SRR4302545.921896/1‑94 (MQ=60)
                                                                            TTTTCTTGACTGGGAAGTAAAATGCCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAG                  <  SRR4302545.7368269/94‑1 (MQ=60)
                                                                            TTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAG                  >  SRR4302545.8276505/1‑94 (MQ=60)
                                                                            TTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAG                  <  SRR4302545.1555885/94‑1 (MQ=60)
                                                                            TTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAG                  >  SRR4302545.2308188/1‑94 (MQ=60)
                                                                             TTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGC                 >  SRR4302545.5282133/1‑94 (MQ=60)
                                                                              TTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCA                <  SRR4302545.1298391/94‑1 (MQ=60)
                                                                              TTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCA                <  SRR4302545.1129355/94‑1 (MQ=60)
                                                                              TTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCA                <  SRR4302545.404583/94‑1 (MQ=60)
                                                                              TTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCA                >  SRR4302545.2370853/1‑94 (MQ=60)
                                                                              TTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCA                <  SRR4302545.3051570/94‑1 (MQ=60)
                                                                              TTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCA                <  SRR4302545.7086618/94‑1 (MQ=60)
                                                                               TCTTGACTGGGAAGTAAAATGCCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAG               <  SRR4302545.9280198/94‑1 (MQ=60)
                                                                               TCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAG               >  SRR4302545.1486562/1‑94 (MQ=60)
                                                                               TCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAG               <  SRR4302545.2981908/94‑1 (MQ=60)
                                                                               TCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAG               <  SRR4302545.2457784/94‑1 (MQ=60)
                                                                               TCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAG               >  SRR4302545.10897744/1‑94 (MQ=60)
                                                                                CTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGA              >  SRR4302545.8066856/1‑94 (MQ=60)
                                                                                CTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGA              >  SRR4302545.8978853/1‑94 (MQ=60)
                                                                                CTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGA              >  SRR4302545.8520946/1‑94 (MQ=60)
                                                                                 TTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAA             >  SRR4302545.8578461/1‑94 (MQ=60)
                                                                                  TGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAA            <  SRR4302545.10151237/94‑1 (MQ=60)
                                                                                  TGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAA            >  SRR4302545.8043662/1‑94 (MQ=60)
                                                                                   GACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAA           <  SRR4302545.662049/94‑1 (MQ=60)
                                                                                    ACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAAC          <  SRR4302545.5067723/94‑1 (MQ=60)
                                                                                    ACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAAC          >  SRR4302545.1216258/1‑94 (MQ=60)
                                                                                    ACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAAC          <  SRR4302545.80290/94‑1 (MQ=60)
                                                                                    ACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAAC          <  SRR4302545.6410012/94‑1 (MQ=60)
                                                                                     CTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACG         >  SRR4302545.3078218/1‑94 (MQ=60)
                                                                                     CTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACG         >  SRR4302545.5219914/1‑94 (MQ=60)
                                                                                     CTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACG         >  SRR4302545.923775/1‑94 (MQ=60)
                                                                                      TGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGC        >  SRR4302545.2127288/1‑94 (MQ=60)
                                                                                      TGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGC        >  SRR4302545.3741873/1‑94 (MQ=60)
                                                                                      TGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAACTCCTGGATATCTTCCATCAGATAGCCACGATAGCGCCGAAAACGC        <  SRR4302545.9681051/94‑1 (MQ=60)
                                                                                       GGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCT       <  SRR4302545.8362049/94‑1 (MQ=60)
                                                                                       GGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCAACAGATCGCCACGATAGAGCAGAAAACGCT       <  SRR4302545.8301509/94‑1 (MQ=60)
                                                                                        gagaaGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCT       <  SRR4302545.2857354/89‑1 (MQ=60)
                                                                                        GGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTG      <  SRR4302545.4157118/94‑1 (MQ=60)
                                                                                        GGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTG      <  SRR4302545.3230765/94‑1 (MQ=60)
                                                                                        GGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTG      >  SRR4302545.686735/1‑94 (MQ=60)
                                                                                         GAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGG     <  SRR4302545.3905839/94‑1 (MQ=60)
                                                                                         GAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGG     <  SRR4302545.9918203/94‑1 (MQ=60)
                                                                                           AAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGA    >  SRR4302545.5002073/1‑94 (MQ=60)
                                                                                           AAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGA    <  SRR4302545.6756185/94‑1 (MQ=60)
                                                                                           AAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGA    >  SRR4302545.8138007/1‑94 (MQ=60)
                                                                                           AAGTAAAATACCGTATGCGCTCAGGCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGTTAGCCACGATATAGCAGAAAACGCGGGA    >  SRR4302545.8138006/1‑94 (MQ=60)
                                                                                            AGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACTCTGGAT   <  SRR4302545.4030740/94‑1 (MQ=60)
                                                                                            AGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGAT   <  SRR4302545.3736388/94‑1 (MQ=60)
                                                                                            AGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGAT   <  SRR4302545.3552808/94‑1 (MQ=60)
                                                                                            AGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGAT   <  SRR4302545.8962292/94‑1 (MQ=60)
                                                                                             |                                                                                             
GCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATC  >  NC_000913/2820051‑2820237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: