Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,166,935 2 bp→CG coding (312‑313/483 nt) b3023 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,166,9350GC100.0% 1655.8 / NA 476L105V (CTT→GTT) b3023hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (223/253);  total (223/253)
*NC_0009133,166,9360CG100.0% 1668.7 / NA 477Q104H (CAG→CAC) b3023hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (223/254);  total (223/254)

Only 100 of 491 total aligned reads displayed.

GGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCG  >  NC_000913/3166847‑3167023
                                                                                        ||                                                                                       
ggTGCTTTACGCATTTTCTCGCCGCTTGCAGGCTGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGc                                                                                     <  2:10192728/94‑1 (MQ=255)
ggTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGc                                                                                     >  1:3854446/1‑94 (MQ=255)
ggTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGc                                                                                     <  1:3332258/94‑1 (MQ=255)
 gTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCg                                                                                    <  2:9773819/94‑1 (MQ=255)
 gTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCg                                                                                    <  1:2911337/94‑1 (MQ=255)
  tGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCgg                                                                                   <  1:7296193/94‑1 (MQ=255)
    cTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGc                                                                                 >  2:2831230/1‑94 (MQ=255)
    cTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGc                                                                                 <  2:5734817/94‑1 (MQ=255)
     tttACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGcc                                                                                >  2:176051/1‑94 (MQ=255)
      ttACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCa                                                                               >  1:2463604/1‑94 (MQ=255)
       tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCAc                                                                              <  2:9018410/94‑1 (MQ=255)
        aCGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACg                                                                             >  2:7522266/1‑94 (MQ=255)
        aCGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACg                                                                             >  1:6118293/1‑94 (MQ=255)
        aCGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACg                                                                             <  1:7857289/94‑1 (MQ=255)
           cATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCa                                                                          >  1:10002119/1‑94 (MQ=255)
            aTTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCaa                                                                         >  2:7856512/1‑93 (MQ=255)
             ttttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATa                                                                        <  1:8055700/94‑1 (MQ=255)
              tttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATaa                                                                       <  2:2151955/94‑1 (MQ=255)
               ttgtcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAc                                                                      <  2:5266270/91‑1 (MQ=255)
               ttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAc                                                                      <  2:2995114/94‑1 (MQ=255)
                tctcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACg                                                                     <  2:9222714/94‑1 (MQ=255)
                 ctcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGt                                                                    >  1:10466016/1‑94 (MQ=255)
                    gccgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCa                                                                 >  1:4839551/1‑94 (MQ=255)
                      cgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAcc                                                               >  2:542392/1‑94 (MQ=255)
                      cgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAcc                                                               <  1:5636093/94‑1 (MQ=255)
                       gcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCg                                                              >  2:7732544/1‑94 (MQ=255)
                        cTTGCAGGCAGCCAGTGGCGAATGATGCTCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCCCCgg                                                             <  1:3491577/94‑1 (MQ=255)
                          tGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTa                                                           <  2:416339/94‑1 (MQ=255)
                          tGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTa                                                           <  2:10508321/94‑1 (MQ=255)
                           gcaggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTaa                                                          <  1:5550740/94‑1 (MQ=255)
                           gcaggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTaa                                                          >  1:6674207/1‑94 (MQ=255)
                            caggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAg                                                         <  2:1327363/94‑1 (MQ=255)
                            caggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAg                                                         <  1:3622440/94‑1 (MQ=255)
                                cagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCa                                                     >  2:3841932/1‑94 (MQ=255)
                                 agCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAc                                                    >  2:1932226/1‑94 (MQ=255)
                                  gCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAcc                                                   <  2:8285380/94‑1 (MQ=255)
                                   ccAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCa                                                  >  1:5019422/1‑94 (MQ=255)
                                    cAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCAt                                                 <  1:7732660/94‑1 (MQ=255)
                                     aGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCAtt                                                <  2:5914393/94‑1 (MQ=255)
                                      gTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTg                                               <  2:331092/94‑1 (MQ=255)
                                      gTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTg                                               <  1:7366322/94‑1 (MQ=255)
                                        ggCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCt                                             >  2:4828771/1‑94 (MQ=255)
                                        ggCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCt                                             <  1:1032824/94‑1 (MQ=255)
                                         gCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTc                                            >  1:4555003/1‑94 (MQ=255)
                                           gAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTcac                                          >  2:2293435/1‑94 (MQ=255)
                                           gAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGGAAGTTCACCATTGCTcac                                          >  1:2963569/1‑94 (MQ=255)
                                            aaTGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTcaca                                         <  1:681895/94‑1 (MQ=255)
                                            aaTGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTcaca                                         <  1:4290685/94‑1 (MQ=255)
                                             atgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCacac                                        >  1:3099719/1‑94 (MQ=255)
                                             atgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCacac                                        <  1:531919/94‑1 (MQ=255)
                                              tgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACAcc                                       >  2:1069504/1‑94 (MQ=255)
                                               gatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCa                                      >  2:10091231/1‑94 (MQ=255)
                                                 tgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGGTCACCATTGCTCACACCATa                                    >  2:8844428/1‑94 (MQ=255)
                                                   ccccATACCGTGTGTGAAATATCGTTCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAc                                  <  1:1153644/94‑1 (MQ=255)
                                                   ccccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAc                                  >  1:8351527/1‑94 (MQ=255)
                                                   ccccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAc                                  <  1:5865655/94‑1 (MQ=255)
                                                   ccccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAc                                  <  2:6497358/94‑1 (MQ=255)
                                                    cccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACg                                 <  1:276402/94‑1 (MQ=255)
                                                     ccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGa                                >  2:6459226/1‑94 (MQ=255)
                                                      cATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGGTTACCATTGCTCACACCCTCACGAt                               >  1:5761967/1‑94 (MQ=255)
                                                       aTACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAtt                              >  1:900637/1‑94 (MQ=255)
                                                       aTACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAtt                              <  2:1172523/94‑1 (MQ=255)
                                                       aTACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAtt                              >  1:2641735/1‑94 (MQ=255)
                                                        tACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTa                             <  1:5245818/94‑1 (MQ=255)
                                                         aCCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAt                            <  1:7088563/94‑1 (MQ=255)
                                                          ccGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATc                           >  2:9289095/1‑94 (MQ=255)
                                                          ccGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATc                           <  2:1239000/94‑1 (MQ=255)
                                                           cGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCg                          <  1:857296/94‑1 (MQ=255)
                                                           cGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCg                          >  2:6593762/1‑94 (MQ=255)
                                                            gtgtgtGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCgg                         >  2:3229034/1‑94 (MQ=255)
                                                             tgtgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCggg                        <  2:3920367/94‑1 (MQ=255)
                                                             tgtgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCggg                        <  2:9692900/94‑1 (MQ=255)
                                                              gtgtgAAATATCGTCTAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGa                       <  1:1610183/94‑1 (MQ=255)
                                                              gtgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGa                       <  1:4090205/94‑1 (MQ=255)
                                                               tgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGaa                      <  2:2534883/94‑1 (MQ=255)
                                                                 tgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATc                    >  1:1707948/1‑94 (MQ=255)
                                                                  gAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCg                   >  2:4706674/1‑94 (MQ=255)
                                                                  gAAATATCGTCCAGCTCGCCAACGGGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCg                   <  1:7008993/94‑1 (MQ=255)
                                                                   aaaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCgg                  >  2:2631435/1‑94 (MQ=255)
                                                                    aaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGt                 >  2:3116134/1‑94 (MQ=255)
                                                                    aaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGt                 <  1:9725617/94‑1 (MQ=255)
                                                                     atatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGtt                >  1:9318/1‑94 (MQ=255)
                                                                     atatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGtt                <  2:6152735/94‑1 (MQ=255)
                                                                     atatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGtt                <  1:6303132/94‑1 (MQ=255)
                                                                     atatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGtt                >  1:2223634/1‑94 (MQ=255)
                                                                      tatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc               <  2:4523311/94‑1 (MQ=255)
                                                                      tatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc               <  1:9594066/94‑1 (MQ=255)
                                                                       atCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCg              >  1:4745862/1‑94 (MQ=255)
                                                                         cGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCt            >  1:880342/1‑94 (MQ=255)
                                                                          gTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTa           >  2:6828401/1‑94 (MQ=255)
                                                                          gTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTa           >  2:5570589/1‑94 (MQ=255)
                                                                            ccAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAc         <  2:7393140/94‑1 (MQ=255)
                                                                               gCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCt      <  2:9551045/94‑1 (MQ=255)
                                                                                cTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTg     >  2:8048700/1‑94 (MQ=255)
                                                                                cTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTg     >  2:5060536/1‑94 (MQ=255)
                                                                                 tCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGc    >  1:1893290/1‑94 (MQ=255)
                                                                                 tCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGc    >  1:6440486/1‑94 (MQ=255)
                                                                                 tCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGc    >  1:133671/1‑94 (MQ=255)
                                                                                  cGCCAACGTGGCGGGCCATGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGcc   >  2:4917425/1‑94 (MQ=255)
                                                                                   gCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCg  <  2:8482178/94‑1 (MQ=255)
                                                                                        ||                                                                                       
GGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCG  >  NC_000913/3166847‑3167023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 238 total aligned reads displayed.
GGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCTGTA  >  NC_000913/3174350‑3174536
                                                                                             |                                                                                             
GGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGC                                                                                               >  SRR4302545.565925/1‑94 (MQ=60)
GGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGC                                                                                               >  SRR4302545.6364511/1‑94 (MQ=60)
GGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGC                                                                                               <  SRR4302545.1425968/94‑1 (MQ=60)
GGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGC                                                                                               <  SRR4302545.3114420/94‑1 (MQ=60)
 GATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCG                                                                                              >  SRR4302545.2535848/1‑94 (MQ=60)
  ATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGC                                                                                             >  SRR4302545.3988271/1‑94 (MQ=60)
  ATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGC                                                                                             >  SRR4302545.9292958/1‑94 (MQ=60)
    GATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGG                                                                                           <  SRR4302545.681462/94‑1 (MQ=60)
    GATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGG                                                                                           <  SRR4302545.6347248/94‑1 (MQ=60)
    GATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGG                                                                                           >  SRR4302545.9586186/1‑94 (MQ=60)
     ATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGC                                                                                          <  SRR4302545.4190519/94‑1 (MQ=60)
      TGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCA                                                                                         >  SRR4302545.6679153/1‑94 (MQ=60)
      TGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCA                                                                                         <  SRR4302545.5532458/94‑1 (MQ=60)
      TGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACAGCGCGGCA                                                                                         >  SRR4302545.10576829/1‑94 (MQ=60)
       GATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCAC                                                                                        <  SRR4302545.103492/94‑1 (MQ=60)
        ATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACG                                                                                       <  SRR4302545.6127605/94‑1 (MQ=60)
          GCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCC                                                                                     <  SRR4302545.1080270/94‑1 (MQ=60)
           CAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCA                                                                                    >  SRR4302545.9753426/1‑94 (MQ=60)
           CAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCA                                                                                    <  SRR4302545.6825611/94‑1 (MQ=60)
           CAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCA                                                                                    >  SRR4302545.4220605/1‑94 (MQ=60)
           CAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCA                                                                                    >  SRR4302545.4276359/1‑94 (MQ=60)
            AGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAA                                                                                   <  SRR4302545.2930924/94‑1 (MQ=60)
            AGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAA                                                                                   >  SRR4302545.3283718/1‑94 (MQ=60)
             GCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAA                                                                                  <  SRR4302545.3510208/94‑1 (MQ=60)
             GCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAA                                                                                  <  SRR4302545.7200619/94‑1 (MQ=60)
               AGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACA                                                                                <  SRR4302545.4393738/94‑1 (MQ=60)
               AGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACA                                                                                >  SRR4302545.4282824/1‑94 (MQ=60)
                 CAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGGTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACC                                                                              >  SRR4302545.1136364/1‑94 (MQ=60)
                  AGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCT                                                                             >  SRR4302545.9575291/1‑94 (MQ=60)
                  AGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCT                                                                             <  SRR4302545.10752388/94‑1 (MQ=60)
                  AGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCT                                                                             <  SRR4302545.8835821/94‑1 (MQ=60)
                  AGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCT                                                                             <  SRR4302545.10923692/94‑1 (MQ=60)
                    CAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGG                                                                           >  SRR4302545.5770115/1‑94 (MQ=60)
                    CAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGG                                                                           <  SRR4302545.2120562/94‑1 (MQ=60)
                     AACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGC                                                                          <  SRR4302545.5665170/94‑1 (MQ=60)
                     AACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGC                                                                          >  SRR4302545.4647163/1‑94 (MQ=60)
                     AACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCAAGCGAAACACCgggt                                                                          >  SRR4302545.2562694/1‑90 (MQ=60)
                       CGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTA                                                                        >  SRR4302545.6917682/1‑94 (MQ=60)
                       CGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTA                                                                        >  SRR4302545.10508314/1‑94 (MQ=60)
                       CGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTA                                                                        <  SRR4302545.5454961/94‑1 (MQ=60)
                        GTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTAT                                                                       >  SRR4302545.1608824/1‑94 (MQ=60)
                        GTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTAT                                                                       >  SRR4302545.6144176/1‑94 (MQ=60)
                        GTATGGCGTTCTGGCGCATCGGCCAGTTGACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTAT                                                                       <  SRR4302545.1907950/94‑1 (MQ=60)
                         TATGGCGTTCTGGCGCATCTGCCAGTTTACGTTCCAGCCACTGAAGGTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTTGCTATC                                                                      >  SRR4302545.6437198/1‑94 (MQ=60)
                         TATGGCGTTCTGGCGCATCGGCCAGTTTACGTCCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATC                                                                      <  SRR4302545.6083762/94‑1 (MQ=60)
                          ATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCC                                                                     <  SRR4302545.10513454/94‑1 (MQ=60)
                           TGGCGTTGTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCA                                                                    <  SRR4302545.2051452/94‑1 (MQ=60)
                            tgtgttttttaGCATCGGCCATTTTACTTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAG                                                                   <  SRR4302545.7364276/83‑1 (MQ=60)
                            GGCGTTCTGTCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAG                                                                   <  SRR4302545.5372080/94‑1 (MQ=60)
                            GGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAG                                                                   <  SRR4302545.7406221/94‑1 (MQ=60)
                            GGCGTTCTGGCGCATCGGCCAGTATACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAG                                                                   <  SRR4302545.7406222/94‑1 (MQ=60)
                               GTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAA                                                                >  SRR4302545.4272767/1‑94 (MQ=60)
                               GTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAA                                                                >  SRR4302545.1005379/1‑94 (MQ=60)
                               GTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAA                                                                <  SRR4302545.9071124/94‑1 (MQ=60)
                               GTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAA                                                                >  SRR4302545.761015/1‑94 (MQ=60)
                                TTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAAC                                                               <  SRR4302545.7260420/94‑1 (MQ=60)
                                TTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAAC                                                               <  SRR4302545.9865412/94‑1 (MQ=60)
                                TTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAAC                                                               <  SRR4302545.5424882/94‑1 (MQ=60)
                                 TCTGGCGCATCGTCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACA                                                              <  SRR4302545.2945979/94‑1 (MQ=60)
                                 TCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACA                                                              <  SRR4302545.9906551/94‑1 (MQ=60)
                                 TCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACATGGCTATCCAGCAACA                                                              >  SRR4302545.2958108/1‑94 (MQ=60)
                                  CTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAG                                                             <  SRR4302545.7986973/94‑1 (MQ=60)
                                  CTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAG                                                             <  SRR4302545.8584278/94‑1 (MQ=60)
                                   TGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGG                                                            >  SRR4302545.3055199/1‑94 (MQ=60)
                                   TGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGG                                                            <  SRR4302545.7602557/94‑1 (MQ=60)
                                     GCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGAT                                                          <  SRR4302545.7428350/94‑1 (MQ=60)
                                     GCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGAGCGCCACGCCAAACACCTGGCTATCCAGCAACAGGAT                                                          >  SRR4302545.3870253/1‑94 (MQ=60)
                                     GCGCACCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGAT                                                          <  SRR4302545.4728754/94‑1 (MQ=60)
                                      CGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATT                                                         >  SRR4302545.10300757/1‑94 (MQ=60)
                                      CGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAAGATT                                                         >  SRR4302545.6668946/1‑94 (MQ=60)
                                       GCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTT                                                        <  SRR4302545.2443846/94‑1 (MQ=60)
                                       GCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTT                                                        <  SRR4302545.10393969/94‑1 (MQ=60)
                                       GCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTT                                                        <  SRR4302545.9424139/94‑1 (MQ=60)
                                       GCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTT                                                        >  SRR4302545.1846075/1‑94 (MQ=60)
                                        CATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTG                                                       >  SRR4302545.9852884/1‑94 (MQ=60)
                                        CATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTG                                                       >  SRR4302545.6048928/1‑94 (MQ=60)
                                        CATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTG                                                       <  SRR4302545.2754333/94‑1 (MQ=60)
                                        CATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTG                                                       <  SRR4302545.2198072/94‑1 (MQ=60)
                                         ATCGGCCAGTTTAGGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGC                                                      >  SRR4302545.10544186/1‑94 (MQ=60)
                                         ATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGC                                                      >  SRR4302545.2270804/1‑94 (MQ=60)
                                         ATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGC                                                      <  SRR4302545.5034430/94‑1 (MQ=60)
                                          TCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCC                                                     >  SRR4302545.4103839/1‑94 (MQ=60)
                                          TCGGCCAGTTTACGTCCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCC                                                     <  SRR4302545.6138303/94‑1 (MQ=60)
                                           CGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCGCCAACAGGATTTGCCA                                                    >  SRR4302545.9014688/1‑94 (MQ=60)
                                           CGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCA                                                    >  SRR4302545.9014689/1‑94 (MQ=60)
                                            GGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCAT                                                   >  SRR4302545.8859435/1‑94 (MQ=60)
                                            GGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCAT                                                   >  SRR4302545.8589399/1‑94 (MQ=60)
                                            GGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCAT                                                   <  SRR4302545.8686752/94‑1 (MQ=60)
                                            GGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCAT                                                   <  SRR4302545.9206469/94‑1 (MQ=60)
                                             GCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATT                                                  <  SRR4302545.9448824/94‑1 (MQ=60)
                                             GCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATT                                                  <  SRR4302545.336400/94‑1 (MQ=60)
                                             GCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATT                                                  >  SRR4302545.10708181/1‑94 (MQ=60)
                                              CCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCTAACACCTGGCTATCCAGCAACAGGATTTGCCATTG                                                 >  SRR4302545.6330710/1‑94 (MQ=60)
                                              CCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTG                                                 >  SRR4302545.7017164/1‑94 (MQ=60)
                                               CAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGC                                                >  SRR4302545.2983128/1‑94 (MQ=60)
                                               CAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGC                                                <  SRR4302545.3268191/94‑1 (MQ=60)
                                               CAGTTTACGTTCCAGACACTCAAGCTGAAACTCGCTCAACTAACCGCGCGGCACGCTAAACACCTCGCTATCCAGAAACAGCATTTGCCACTGC                                                >  SRR4302545.5296330/1‑94 (MQ=55)
                                                AGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCT                                               >  SRR4302545.4164100/1‑94 (MQ=60)
                                                AGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCT                                               >  SRR4302545.3192657/1‑94 (MQ=60)
                                                AGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCT                                               <  SRR4302545.9866952/94‑1 (MQ=60)
                                                 GTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTC                                              >  SRR4302545.6864371/1‑94 (MQ=60)
                                                  TTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCA                                             <  SRR4302545.5351122/94‑1 (MQ=60)
                                                   TTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCAC                                            >  SRR4302545.1193410/1‑94 (MQ=60)
                                                    TACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACC                                           <  SRR4302545.6891295/94‑1 (MQ=60)
                                                      CGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAA                                         <  SRR4302545.3076423/94‑1 (MQ=60)
                                                      CGTACCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAA                                         <  SRR4302545.4182851/94‑1 (MQ=60)
                                                       ctcCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAAT                                        <  SRR4302545.3981788/91‑1 (MQ=60)
                                                       GTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGTTCACCAAT                                        >  SRR4302545.8295334/1‑94 (MQ=60)
                                                       GTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAAT                                        >  SRR4302545.3903223/1‑94 (MQ=60)
                                                       GTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAAT                                        <  SRR4302545.3711700/94‑1 (MQ=60)
                                                        TTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATA                                       >  SRR4302545.4253863/1‑94 (MQ=60)
                                                          CCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAA                                     <  SRR4302545.6005808/94‑1 (MQ=60)
                                                          CCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAA                                     <  SRR4302545.994201/94‑1 (MQ=60)
                                                          CCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAA                                     <  SRR4302545.2309457/94‑1 (MQ=60)
                                                          CCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAA                                     >  SRR4302545.3594634/1‑94 (MQ=60)
                                                          CCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAA                                     >  SRR4302545.4480691/1‑94 (MQ=60)
                                                          CCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAA                                     >  SRR4302545.3789354/1‑94 (MQ=60)
                                                            AGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACA                                   <  SRR4302545.8308795/94‑1 (MQ=60)
                                                            AGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACA                                   <  SRR4302545.6776036/94‑1 (MQ=60)
                                                            AGCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACA                                   >  SRR4302545.8843220/1‑94 (MQ=60)
                                                             cctactcaagcataagCTCGCTCAGCTCACCGCGCGGCACGCCAAACCCCTGACTATCCAGCAACAGGATTTGCCAGTGCTTACCAATAAACAC                                  <  SRR4302545.3937411/78‑1 (MQ=60)
                                                             GCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACAC                                  <  SRR4302545.7909539/94‑1 (MQ=60)
                                                             GCCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACAC                                  <  SRR4302545.3811315/94‑1 (MQ=60)
                                                              CCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACG                                 >  SRR4302545.2052740/1‑94 (MQ=60)
                                                              CCACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACG                                 <  SRR4302545.7581561/94‑1 (MQ=60)
                                                               CACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGC                                >  SRR4302545.3238487/1‑94 (MQ=60)
                                                               CACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGC                                >  SRR4302545.4333215/1‑94 (MQ=60)
                                                                CCTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCG                               <  SRR4302545.638795/94‑1 (MQ=60)
                                                                ACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCG                               >  SRR4302545.8419599/1‑94 (MQ=60)
                                                                ACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCG                               >  SRR4302545.6572584/1‑94 (MQ=60)
                                                                ACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCG                               <  SRR4302545.7393781/94‑1 (MQ=60)
                                                                ACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCG                               >  SRR4302545.3141478/1‑94 (MQ=60)
                                                                ACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCG                               >  SRR4302545.8526539/1‑94 (MQ=60)
                                                                ACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCG                               >  SRR4302545.6418579/1‑94 (MQ=60)
                                                                ACTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCA                               <  SRR4302545.3353923/94‑1 (MQ=60)
                                                                 CTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGC                              >  SRR4302545.10230468/1‑94 (MQ=60)
                                                                 CTCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGC                              >  SRR4302545.486179/1‑94 (MQ=60)
                                                                  ccaacCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCT                             <  SRR4302545.7871605/89‑1 (MQ=60)
                                                                  TCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCT                             <  SRR4302545.2087702/94‑1 (MQ=60)
                                                                  TCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCT                             >  SRR4302545.8703072/1‑94 (MQ=60)
                                                                  TCAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCT                             >  SRR4302545.8703073/1‑94 (MQ=60)
                                                                   CAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTT                            <  SRR4302545.2871842/94‑1 (MQ=60)
                                                                   CAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTT                            <  SRR4302545.2871843/94‑1 (MQ=60)
                                                                   CAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTT                            <  SRR4302545.5202230/94‑1 (MQ=60)
                                                                   CAAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGACAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTT                            >  SRR4302545.4448367/1‑94 (MQ=60)
                                                                    AAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGTCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTC                           <  SRR4302545.4033655/94‑1 (MQ=60)
                                                                    AAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTC                           <  SRR4302545.2784413/94‑1 (MQ=60)
                                                                    AAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTC                           >  SRR4302545.4423398/1‑94 (MQ=60)
                                                                    AAGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTC                           <  SRR4302545.7468623/94‑1 (MQ=60)
                                                                     AGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCG                          <  SRR4302545.10093258/94‑1 (MQ=60)
                                                                     AGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCG                          <  SRR4302545.1940681/94‑1 (MQ=60)
                                                                     AGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCG                          <  SRR4302545.973144/94‑1 (MQ=60)
                                                                     AGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCG                          <  SRR4302545.5201686/94‑1 (MQ=60)
                                                                     AGCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCG                          <  SRR4302545.650258/94‑1 (MQ=60)
                                                                      GCTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGC                         >  SRR4302545.7072301/1‑94 (MQ=60)
                                                                       CTGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCC                        >  SRR4302545.5799553/1‑94 (MQ=60)
                                                                        TGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCG                       >  SRR4302545.7712503/1‑94 (MQ=60)
                                                                        TGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCG                       <  SRR4302545.4857154/94‑1 (MQ=60)
                                                                        TGAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCG                       <  SRR4302545.3782607/94‑1 (MQ=60)
                                                                         GAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGG                      >  SRR4302545.10272863/1‑94 (MQ=60)
                                                                         GAAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGG                      >  SRR4302545.6628354/1‑94 (MQ=60)
                                                                          AACCTCGCTCAGCTCACAGCGCGGCAAGCCAACCACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGACCTTCGCCGGG                     >  SRR4302545.10762252/1‑94 (MQ=60)
                                                                          AAACTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGG                     >  SRR4302545.4653101/1‑94 (MQ=60)
                                                                             CTCGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAG                  <  SRR4302545.5064575/94‑1 (MQ=60)
                                                                               CGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGAT                >  SRR4302545.1953071/1‑94 (MQ=60)
                                                                               CGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGAT                >  SRR4302545.1953070/1‑94 (MQ=60)
                                                                               CGCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGAT                <  SRR4302545.6665017/94‑1 (MQ=60)
                                                                                GCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATA               >  SRR4302545.1100390/1‑94 (MQ=60)
                                                                                GCTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATA               <  SRR4302545.1752125/94‑1 (MQ=60)
                                                                                 CTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATAC              >  SRR4302545.7166931/1‑94 (MQ=60)
                                                                                 CTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATAC              <  SRR4302545.8950040/94‑1 (MQ=60)
                                                                                 CTCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATAC              <  SRR4302545.8950321/94‑1 (MQ=60)
                                                                                  TCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACC             >  SRR4302545.1109679/1‑94 (MQ=60)
                                                                                  TCAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACC             <  SRR4302545.1870556/94‑1 (MQ=60)
                                                                                   CAGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCC            <  SRR4302545.708575/94‑1 (MQ=60)
                                                                                   CAGCCCACTGCGCGGCACGCCAAACACCTGACTAGCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCC            <  SRR4302545.9730714/94‑1 (MQ=60)
                                                                                    AGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCG           >  SRR4302545.2207531/1‑94 (MQ=60)
                                                                                    AGCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCG           >  SRR4302545.9130314/1‑94 (MQ=60)
                                                                                     GCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGC          >  SRR4302545.2878469/1‑94 (MQ=60)
                                                                                     GCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGC          <  SRR4302545.10321816/94‑1 (MQ=60)
                                                                                     GCTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGC          >  SRR4302545.1333378/1‑94 (MQ=60)
                                                                                      CTCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCA         <  SRR4302545.5143612/94‑1 (MQ=60)
                                                                                       TCACCGCGCGGCCCGCCAAACACCTGGCTATCCAACAACAGGATTTGCCATTGCTCACCAATACACACGCGCTTCGCCGGGGAGATACCCGCAT        >  SRR4302545.10296572/1‑94 (MQ=60)
                                                                                       TCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCAT        >  SRR4302545.7435220/1‑94 (MQ=60)
                                                                                       TCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCAT        <  SRR4302545.2933567/94‑1 (MQ=60)
                                                                                       TCACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCAT        <  SRR4302545.9450983/94‑1 (MQ=60)
                                                                                        CACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATC       >  SRR4302545.3717803/1‑94 (MQ=60)
                                                                                        CACAGCGCGGCACGCCAAACACCTGGCTATCCAGCCACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGCGATACCCGCATC       >  SRR4302545.3781408/1‑94 (MQ=60)
                                                                                         ACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCC      >  SRR4302545.2659984/1‑94 (MQ=60)
                                                                                         ACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCC      >  SRR4302545.826858/1‑94 (MQ=60)
                                                                                         ACCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCCCCGGGGAGAAACCCGCA‑CCT     >  SRR4302545.6264707/1‑94 (MQ=60)
                                                                                          CCGCGCGGCACGCCAAACCCCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCT     <  SRR4302545.6386915/94‑1 (MQ=60)
                                                                                          CCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCT     >  SRR4302545.7789014/1‑94 (MQ=60)
                                                                                          CCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCT     <  SRR4302545.3212881/94‑1 (MQ=60)
                                                                                          CCGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCT     <  SRR4302545.9003414/94‑1 (MQ=60)
                                                                                           CGCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCTG    <  SRR4302545.6322055/94‑1 (MQ=60)
                                                                                            GCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCTGT   >  SRR4302545.1457760/1‑94 (MQ=60)
                                                                                            GCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCTGT   <  SRR4302545.1499100/94‑1 (MQ=60)
                                                                                            GCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCTGT   <  SRR4302545.9232149/94‑1 (MQ=60)
                                                                                            GCGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCTGT   <  SRR4302545.5134190/94‑1 (MQ=60)
                                                                                             |                                                                                             
GGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCTTCGCCGGGGAGATACCCGCATCCTGTA  >  NC_000913/3174350‑3174536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑