Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,001,421 2 bp→GC coding (381‑382/903 nt) rarD ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,001,4210CG99.8% 1832.9 / NA 529G128R (GGA→CGA) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/1);  major base G (260/267);  minor base A (0/1);  total (260/269)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*NC_0009134,001,4220GC99.8% 1840.7 / ‑4.8 530D127E (GAC→GAG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (260/269);  total (260/270)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.24e-01

Only 100 of 549 total aligned reads displayed.

ATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTC  >  NC_000913/4001333‑4001509
                                                                                        ||                                                                                       
ataataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAAtcgctcgc                                                                                     >  1:6784643/1‑94 (MQ=255)
 taataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGcc                                                                                    <  2:5415197/94‑1 (MQ=255)
   ataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGa                                                                                  <  2:350956/94‑1 (MQ=255)
     aGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAgg                                                                                <  1:10223196/94‑1 (MQ=255)
        tAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaa                                                                             >  1:4698383/1‑94 (MQ=255)
        tAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaa                                                                             >  1:7844475/1‑94 (MQ=255)
         aGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaaa                                                                            <  1:2438722/94‑1 (MQ=255)
         aGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaaa                                                                            >  2:7650961/1‑94 (MQ=255)
           cGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatc                                                                          >  1:4255225/1‑94 (MQ=255)
           cGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCCCCAGCCATTGCATCCGCCGGAATCGATCCCCGAGGaaaaca                                                                          >  1:9120731/1‑92 (MQ=255)
            gAACGAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatca                                                                         >  2:2933958/1‑94 (MQ=255)
             aaCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatcat                                                                        >  2:3698587/1‑94 (MQ=255)
             aaCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatcat                                                                        <  2:2087590/94‑1 (MQ=255)
               ccAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATcc                                                                      >  2:7360002/1‑94 (MQ=255)
               ccAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATcc                                                                      <  1:9020414/94‑1 (MQ=255)
               ccAAAAGTCCACAGCTGGACTAACACGCCACATATCGACAGAATCACCGCCAGCCATTGCATCCGGCGGAATAGCTCGCCGAGGAAAATAATcc                                                                      >  2:6230021/1‑94 (MQ=255)
                 aaaaGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGCGGAAAATCATcccc                                                                    >  1:7229690/1‑94 (MQ=255)
                 aaaaGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATcccc                                                                    <  1:606888/94‑1 (MQ=255)
                 aaaaGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATcccc                                                                    >  1:10341091/1‑94 (MQ=255)
                    aGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGc                                                                 >  2:3401563/1‑94 (MQ=255)
                     gTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGca                                                                <  1:9936313/94‑1 (MQ=255)
                       ccACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGcaca                                                              >  2:8143352/1‑94 (MQ=255)
                         ccaGCTGGACTAACACGCCACATATCTCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAAt                                                            <  2:2828096/93‑1 (MQ=255)
                         ccaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAAt                                                            <  2:8807262/93‑1 (MQ=255)
                          caGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATg                                                           >  1:441157/1‑94 (MQ=255)
                           aGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGt                                                          >  2:4869037/1‑94 (MQ=255)
                            gCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGtt                                                         >  1:10025958/1‑94 (MQ=255)
                             cTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTc                                                        >  2:8507067/1‑94 (MQ=255)
                             cTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTc                                                        >  2:3001169/1‑94 (MQ=255)
                              tGGACTAACACGCCACATATCACCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCa                                                       <  1:3503568/94‑1 (MQ=255)
                               ggACTAACCCGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAc                                                      <  2:3181785/94‑1 (MQ=255)
                               ggACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAc                                                      >  2:9394487/1‑94 (MQ=255)
                               ggACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAc                                                      <  2:2001317/94‑1 (MQ=255)
                                gACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAcc                                                     <  1:6982085/94‑1 (MQ=255)
                                   tAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGc                                                  <  2:1037518/94‑1 (MQ=255)
                                      cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCggg                                               <  1:7477731/94‑1 (MQ=255)
                                      cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCggg                                               <  1:615772/94‑1 (MQ=255)
                                      cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCggg                                               >  1:9351778/1‑94 (MQ=255)
                                       acGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGt                                              <  2:118716/94‑1 (MQ=255)
                                        cGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCggggt                                             >  1:1424715/1‑92 (MQ=255)
                                          ccACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaa                                           <  2:9813399/94‑1 (MQ=255)
                                          ccACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaa                                           >  1:8164554/1‑94 (MQ=255)
                                            acaTATCGCCAGAATCACCGCCAGCCATTGCATCCTGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaata                                         >  1:7117700/1‑94 (MQ=255)
                                              atatCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATaaa                                       <  2:4077183/94‑1 (MQ=255)
                                               tatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAg                                      <  1:8387420/94‑1 (MQ=255)
                                               tatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAg                                      <  2:7263071/94‑1 (MQ=255)
                                                  cGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTac                                   >  2:9170680/1‑93 (MQ=255)
                                                  cGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTaa                                   >  1:9537082/1‑94 (MQ=255)
                                                  cGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTaa                                   >  1:10577029/1‑94 (MQ=255)
                                                  cGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTaa                                   >  2:10280415/1‑94 (MQ=255)
                                                   gCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAAc                                  <  1:2166047/94‑1 (MQ=255)
                                                     cAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCa                                <  2:9032473/94‑1 (MQ=255)
                                                     cAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCa                                <  2:6904994/94‑1 (MQ=255)
                                                     cAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCa                                >  2:5488088/1‑94 (MQ=255)
                                                      aGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTGATAAAGTAACaaa                               >  1:5144466/1‑94 (MQ=255)
                                                      aGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaa                               >  2:658328/1‑94 (MQ=255)
                                                      aGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaa                               <  2:10467921/94‑1 (MQ=255)
                                                       gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAg                              <  1:5353408/94‑1 (MQ=255)
                                                       gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAg                              <  2:9620711/94‑1 (MQ=255)
                                                       gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAg                              <  2:2380061/94‑1 (MQ=255)
                                                        aaTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAgg                             <  1:192725/94‑1 (MQ=255)
                                                         aTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGc                            <  2:10539371/94‑1 (MQ=255)
                                                          tccccGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAACGTTCACCAGCGGGTTAATAAAGTAACCAAGGCt                           <  1:8796932/91‑1 (MQ=255)
                                                          tCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCt                           >  2:6054840/1‑94 (MQ=255)
                                                          tCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCt                           <  2:4388788/94‑1 (MQ=255)
                                                          tCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCt                           >  2:1312613/1‑94 (MQ=255)
                                                           cACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCTGGTTAATAAAGTAACCAAGGCTc                          >  1:7585800/1‑94 (MQ=255)
                                                            aCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcg                         >  1:1194813/1‑93 (MQ=255)
                                                                 cagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTcc                    >  1:6625129/1‑94 (MQ=255)
                                                                 cagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTcc                    >  1:3833195/1‑94 (MQ=255)
                                                                  agccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                   >  2:7726145/1‑94 (MQ=255)
                                                                  agccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                   >  1:8074821/1‑94 (MQ=255)
                                                                   gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAg                  <  1:26410/94‑1 (MQ=255)
                                                                    ccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                 <  1:325317/94‑1 (MQ=255)
                                                                    ccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                 >  1:984205/1‑94 (MQ=255)
                                                                    ccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                 >  2:6399548/1‑94 (MQ=255)
                                                                     caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa                >  1:1622042/1‑94 (MQ=255)
                                                                     caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa                >  1:632102/1‑94 (MQ=255)
                                                                     caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa                <  2:6685848/94‑1 (MQ=255)
                                                                      aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat               <  2:8709585/94‑1 (MQ=255)
                                                                      aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat               <  2:7099337/94‑1 (MQ=255)
                                                                        tGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat             <  1:2968443/94‑1 (MQ=255)
                                                                         gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATg            <  1:8622509/94‑1 (MQ=255)
                                                                          cATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATgg           >  1:4963883/1‑94 (MQ=255)
                                                                           aTCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt          <  1:8296994/94‑1 (MQ=255)
                                                                           aTCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt          <  2:1759884/94‑1 (MQ=255)
                                                                            tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTg         <  2:5834924/94‑1 (MQ=255)
                                                                            tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTg         <  1:6258309/94‑1 (MQ=255)
                                                                             ccGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGa        >  2:5064137/1‑94 (MQ=255)
                                                                              cggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt       >  2:8334135/1‑94 (MQ=255)
                                                                               ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTATCCAAGGCTCGCTTCCAGCATATGGTGAtt      <  2:1536495/94‑1 (MQ=255)
                                                                               ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt      >  2:4720277/1‑94 (MQ=255)
                                                                               ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt      >  1:5637179/1‑94 (MQ=255)
                                                                               ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt      <  1:9674695/94‑1 (MQ=255)
                                                                               ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt      <  1:3403787/94‑1 (MQ=255)
                                                                                 cggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGt    <  1:5804035/94‑1 (MQ=255)
                                                                                  ggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGtt   <  1:8968117/94‑1 (MQ=255)
                                                                                  ggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATATTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGtt   >  1:3711861/1‑94 (MQ=255)
                                                                                   gAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTc  <  2:10108283/94‑1 (MQ=255)
                                                                                   gAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTc  <  2:2550324/94‑1 (MQ=255)
                                                                                        ||                                                                                       
ATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTC  >  NC_000913/4001333‑4001509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 321 total aligned reads displayed.
ACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT  >  NC_000913/4001393‑4001575
                                                                                             |                                                                                         
CCCGCCAGCCATTTAATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                                                                                           <  SRR4302545.3192677/94‑1 (MQ=60)
ACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                                                                                           <  SRR4302545.10020689/94‑1 (MQ=60)
ACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                                                                                           >  SRR4302545.1221532/1‑94 (MQ=60)
ACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                                                                                           >  SRR4302545.10204144/1‑94 (MQ=60)
ACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                                                                                           >  SRR4302545.9102227/1‑94 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      >  SRR4302545.6806710/1‑94 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      >  SRR4302545.3928752/1‑94 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      <  SRR4302545.6471652/94‑1 (MQ=60)
      AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                                                                                     >  SRR4302545.8306345/1‑94 (MQ=60)
       GCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAG                                                                                    <  SRR4302545.7807530/94‑1 (MQ=60)
       GCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAG                                                                                    <  SRR4302545.27029/94‑1 (MQ=60)
         CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA                                                                                  >  SRR4302545.1660569/1‑94 (MQ=60)
         CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA                                                                                  >  SRR4302545.646263/1‑94 (MQ=60)
         CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA                                                                                  <  SRR4302545.4769399/94‑1 (MQ=60)
          ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                                                                                 <  SRR4302545.7747540/94‑1 (MQ=60)
            TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT                                                                               <  SRR4302545.8905859/94‑1 (MQ=60)
            TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT                                                                               <  SRR4302545.7260943/94‑1 (MQ=60)
            TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCCGGTTAATAAAGTAACCAATGCCCGCTTCCAGCATAT                                                                               <  SRR4302545.7260944/94‑1 (MQ=60)
             GCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATG                                                                              <  SRR4302545.2094861/94‑1 (MQ=60)
              CATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG                                                                             >  SRR4302545.5089609/1‑94 (MQ=60)
               ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT                                                                            <  SRR4302545.8537356/94‑1 (MQ=60)
               ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT                                                                            >  SRR4302545.4410109/1‑94 (MQ=60)
               ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT                                                                            >  SRR4302545.8335539/1‑94 (MQ=60)
                 CCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGA                                                                          >  SRR4302545.3444290/1‑94 (MQ=60)
                 CCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGA                                                                          >  SRR4302545.1336559/1‑94 (MQ=60)
                  CGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT                                                                         <  SRR4302545.8585083/94‑1 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        >  SRR4302545.9575804/1‑94 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        >  SRR4302545.5787180/1‑94 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        <  SRR4302545.3486791/94‑1 (MQ=60)
                    gcggattcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG                                                                       <  SRR4302545.907581/84‑1 (MQ=60)
                    GCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG                                                                       <  SRR4302545.10243338/94‑1 (MQ=60)
                    GCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCT‑CGCTTCAGCATATGGTGATTGT                                                                      >  SRR4302545.8131339/1‑94 (MQ=60)
                     aggaatcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTTT                                                                      >  SRR4302545.922835/10‑94 (MQ=60)
                     CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT                                                                      <  SRR4302545.5960165/94‑1 (MQ=60)
                     CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT                                                                      <  SRR4302545.10175969/94‑1 (MQ=60)
                      tgaatcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     >  SRR4302545.3555505/9‑94 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     >  SRR4302545.7153621/1‑94 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     >  SRR4302545.7068624/1‑94 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     >  SRR4302545.7532504/1‑94 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     >  SRR4302545.9326475/1‑94 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     <  SRR4302545.1549464/94‑1 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATATTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     >  SRR4302545.3802959/1‑94 (MQ=60)
                       GAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC                                                                    >  SRR4302545.413743/1‑94 (MQ=60)
                       GAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC                                                                    <  SRR4302545.6870833/94‑1 (MQ=60)
                        aatcgcgCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCA                                                                   <  SRR4302545.9782683/87‑1 (MQ=60)
                        AATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCA                                                                   <  SRR4302545.1763047/94‑1 (MQ=60)
                        AATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCA                                                                   <  SRR4302545.4802927/94‑1 (MQ=60)
                        AATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCA                                                                   <  SRR4302545.2082675/94‑1 (MQ=60)
                        AATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCA                                                                   <  SRR4302545.6268483/94‑1 (MQ=60)
                         atcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAC                                                                  <  SRR4302545.9571258/89‑1 (MQ=60)
                         atcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAC                                                                  <  SRR4302545.8526309/89‑1 (MQ=60)
                         atcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAC                                                                  <  SRR4302545.7224464/89‑1 (MQ=60)
                          tcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGTTTAATAAAGTAACCAAGGCTCGCTGCCAGCATATGGTGATTGTTCACC                                                                 <  SRR4302545.9411435/90‑1 (MQ=60)
                          tcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACC                                                                 >  SRR4302545.9425185/5‑94 (MQ=60)
                          tcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACC                                                                 <  SRR4302545.10125351/90‑1 (MQ=60)
                          tcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACC                                                                 <  SRR4302545.8677223/90‑1 (MQ=60)
                           cgcTCGCCGAGGAAAATCATCCCCGGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                <  SRR4302545.4724435/91‑1 (MQ=60)
                           cgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                >  SRR4302545.4676598/4‑94 (MQ=60)
                           cgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                <  SRR4302545.3883234/91‑1 (MQ=60)
                           cgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                <  SRR4302545.7040464/91‑1 (MQ=60)
                            gcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATCAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAACGC                                                               >  SRR4302545.4545747/3‑94 (MQ=60)
                            gcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGC                                                               >  SRR4302545.5335957/3‑94 (MQ=60)
                            gcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGC                                                               >  SRR4302545.8694075/3‑94 (MQ=60)
                            gcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGC                                                               >  SRR4302545.2091845/3‑94 (MQ=60)
                            gcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGC                                                               >  SRR4302545.4303301/3‑94 (MQ=60)
                             CTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCC                                                              >  SRR4302545.7532960/1‑94 (MQ=60)
                             CTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGCTAATAAATTAACTAAAGCTCGCTTCCAGCATATGGGGATTGCTCACCCCC                                                              >  SRR4302545.2473809/1‑94 (MQ=55)
                               CGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            <  SRR4302545.2916395/94‑1 (MQ=60)
                               CGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            <  SRR4302545.10466416/94‑1 (MQ=60)
                               CGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            >  SRR4302545.9662722/1‑94 (MQ=60)
                                GCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAG                                                           >  SRR4302545.10467723/1‑94 (MQ=60)
                                GCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAG                                                           <  SRR4302545.2995356/94‑1 (MQ=60)
                                 CCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGA                                                          >  SRR4302545.3244667/1‑94 (MQ=60)
                                 CCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGA                                                          >  SRR4302545.4404451/1‑94 (MQ=60)
                                 CCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGGTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGA                                                          >  SRR4302545.4462290/1‑94 (MQ=60)
                                 CCGAGGAAAATCATCCCCAGCACAATGTTCACCAGAGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGA                                                          >  SRR4302545.10664597/1‑94 (MQ=60)
                                  CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         >  SRR4302545.8944071/1‑94 (MQ=60)
                                  CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         <  SRR4302545.6715356/94‑1 (MQ=60)
                                  CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         >  SRR4302545.305584/1‑94 (MQ=60)
                                  CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         >  SRR4302545.1368161/1‑94 (MQ=60)
                                  CGAGGAAAATCATCACCAGAACAATGTTCCGCAGCGGGTTAATAAAGTAACCAAGGGTCGCTTCCAGAATATGGTGATTGTTTACCGCCCAGAT                                                         >  SRR4302545.3177956/1‑94 (MQ=53)
                                   GAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATA                                                        >  SRR4302545.10862478/1‑94 (MQ=60)
                                   GAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGGGATTGTTCATCGCCCAGATA                                                        >  SRR4302545.6791507/1‑94 (MQ=60)
                                    AGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAA                                                       >  SRR4302545.8253778/1‑94 (MQ=60)
                                     GGAAAATCATCCCGAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAA                                                      >  SRR4302545.7813194/1‑94 (MQ=60)
                                      GAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAAC                                                     >  SRR4302545.4972137/1‑94 (MQ=60)
                                      GAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAAC                                                     <  SRR4302545.4676258/94‑1 (MQ=60)
                                       AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACA                                                    >  SRR4302545.6376850/1‑94 (MQ=60)
                                       AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACA                                                    >  SRR4302545.5755076/1‑94 (MQ=60)
                                       AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACA                                                    <  SRR4302545.210833/94‑1 (MQ=60)
                                       AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACA                                                    <  SRR4302545.7441925/94‑1 (MQ=60)
                                       AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAACGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACA                                                    >  SRR4302545.1752382/1‑94 (MQ=60)
                                        AAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   <  SRR4302545.4340085/94‑1 (MQ=60)
                                        AAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   <  SRR4302545.9898477/94‑1 (MQ=60)
                                         AATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGT                                                  <  SRR4302545.8560251/94‑1 (MQ=60)
                                         AATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGT                                                  <  SRR4302545.3671649/94‑1 (MQ=60)
                                         AATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACAGCCCAGATAAACAGA                                                  >  SRR4302545.3001890/1‑94 (MQ=60)
                                          ATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTA                                                 <  SRR4302545.1004565/94‑1 (MQ=60)
                                          ATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAACGCCCAGATAAACAGTA                                                 >  SRR4302545.5227952/1‑94 (MQ=60)
                                            CATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGC                                               <  SRR4302545.7897625/94‑1 (MQ=60)
                                             ATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGGTTGTTCATCGCCCAGGTAAACAGTAGCC                                              >  SRR4302545.848327/1‑94 (MQ=60)
                                             ATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCC                                              >  SRR4302545.158440/1‑94 (MQ=60)
                                              TCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCA                                             <  SRR4302545.6958896/94‑1 (MQ=60)
                                              TCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCA                                             >  SRR4302545.9966198/1‑94 (MQ=60)
                                              TCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCA                                             >  SRR4302545.10544562/1‑94 (MQ=60)
                                                CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           <  SRR4302545.1208018/94‑1 (MQ=60)
                                                 CCAGCACAATGGTCCCCAGCGGGTTAATAAAGGAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          <  SRR4302545.2847774/94‑1 (MQ=60)
                                                  CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         <  SRR4302545.3327843/94‑1 (MQ=60)
                                                  CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         >  SRR4302545.9176856/1‑94 (MQ=60)
                                                  CAGCACAATGTTCACCAGCGGGGTAATAAAGTAACCAAGGCACGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         >  SRR4302545.1498425/1‑94 (MQ=60)
                                                   AGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGC                                        >  SRR4302545.6217895/1‑94 (MQ=60)
                                                    GCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCC                                       >  SRR4302545.2251578/1‑94 (MQ=60)
                                                    GCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCC                                       <  SRR4302545.10041454/94‑1 (MQ=60)
                                                     CACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCA                                      <  SRR4302545.10586381/94‑1 (MQ=60)
                                                     CACAATGTGCACCAGCTGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCA                                      <  SRR4302545.1132354/94‑1 (MQ=60)
                                                      ACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCAC                                     <  SRR4302545.10627115/94‑1 (MQ=60)
                                                      ACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCAC                                     <  SRR4302545.6197133/94‑1 (MQ=60)
                                                       CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGGCCAGATAAACAGTAGCCAGTTGCCACA                                    >  SRR4302545.4093123/1‑94 (MQ=60)
                                                       CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACC                                    >  SRR4302545.6082404/1‑94 (MQ=60)
                                                        AATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCA                                   <  SRR4302545.5268772/94‑1 (MQ=60)
                                                        AATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCA                                   <  SRR4302545.5102351/94‑1 (MQ=60)
                                                          TTTTCACCAGCGTGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAAT                                 <  SRR4302545.1379619/94‑1 (MQ=60)
                                                          TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACGAAT                                 >  SRR4302545.9358314/1‑94 (MQ=60)
                                                          TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAAT                                 >  SRR4302545.3882211/1‑94 (MQ=60)
                                                           GTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATC                                >  SRR4302545.2065056/1‑94 (MQ=60)
                                                           GTTCACCAGCGGGATAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGGAGCCAGTTGCCAGCAATC                                >  SRR4302545.2236122/1‑94 (MQ=60)
                                                            TTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCA                               >  SRR4302545.4492679/1‑94 (MQ=60)
                                                            TTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCA                               >  SRR4302545.2139978/1‑94 (MQ=60)
                                                             TCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAG                              <  SRR4302545.10613355/94‑1 (MQ=60)
                                                              CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             >  SRR4302545.4858309/1‑94 (MQ=60)
                                                              CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             <  SRR4302545.1976200/94‑1 (MQ=60)
                                                               ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA                            >  SRR4302545.1296347/1‑94 (MQ=60)
                                                               ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA                            >  SRR4302545.4155961/1‑94 (MQ=60)
                                                                caacCGGGTTAATAAATTAACCAAGGCTCGCTTCCAGTATATGGTAATTGTTCACCGCCCATATAAACAGTAGCCAGTTGCCACAAATCAGCAC                           <  SRR4302545.587582/90‑1 (MQ=60)
                                                                CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC                           <  SRR4302545.7293224/94‑1 (MQ=60)
                                                                CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC                           <  SRR4302545.8198341/94‑1 (MQ=60)
                                                                CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC                           <  SRR4302545.5015285/94‑1 (MQ=60)
                                                                 CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG                          <  SRR4302545.8157903/94‑1 (MQ=60)
                                                                 CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG                          <  SRR4302545.8275251/94‑1 (MQ=60)
                                                                  AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCCGCACGG                         >  SRR4302545.8867220/1‑94 (MQ=60)
                                                                  AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG                         >  SRR4302545.135771/1‑94 (MQ=60)
                                                                  AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG                         <  SRR4302545.10009925/94‑1 (MQ=60)
                                                                   GCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGC                        <  SRR4302545.4530831/94‑1 (MQ=60)
                                                                   GCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGC                        >  SRR4302545.3252698/1‑94 (MQ=60)
                                                                    CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302545.1146852/94‑1 (MQ=60)
                                                                    CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGAAGCCAGTTGCCACCAATCAGCACGGCA                       >  SRR4302545.3028940/1‑94 (MQ=60)
                                                                     GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      >  SRR4302545.10281374/1‑94 (MQ=60)
                                                                     GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      >  SRR4302545.4732847/1‑94 (MQ=60)
                                                                     GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      >  SRR4302545.10515508/1‑94 (MQ=60)
                                                                      GGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGA                     <  SRR4302545.7828923/94‑1 (MQ=60)
                                                                       GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302545.5473560/94‑1 (MQ=60)
                                                                       GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302545.303768/94‑1 (MQ=60)
                                                                       GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302545.9056615/94‑1 (MQ=60)
                                                                        TTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGA                   >  SRR4302545.874084/1‑94 (MQ=60)
                                                                         TGATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATACACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAC                  >  SRR4302545.5387136/1‑94 (MQ=60)
                                                                         TAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAC                  <  SRR4302545.2018922/94‑1 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATCAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 >  SRR4302545.10938033/1‑94 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302545.7730029/94‑1 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302545.1514476/94‑1 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302545.6689637/94‑1 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302545.3965927/94‑1 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302545.2610546/94‑1 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302545.9493160/94‑1 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGATTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302545.10849042/94‑1 (MQ=60)
                                                                           ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTG                >  SRR4302545.5608277/1‑94 (MQ=60)
                                                                           ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTG                >  SRR4302545.8930080/1‑94 (MQ=60)
                                                                           ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTG                <  SRR4302545.9299674/94‑1 (MQ=60)
                                                                           ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGGTGCCACCAATCAGCACGGCAGAGAGTG                >  SRR4302545.5608276/1‑94 (MQ=60)
                                                                            TAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCTACCAATCAGCACGGCAGAGACTGC               <  SRR4302545.1259474/94‑1 (MQ=60)
                                                                             AAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCC              <  SRR4302545.6574540/94‑1 (MQ=60)
                                                                              AAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCA             <  SRR4302545.7903042/94‑1 (MQ=60)
                                                                              AAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCA             <  SRR4302545.7718857/94‑1 (MQ=60)
                                                                              AAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACAAATCAGCACGGCAGAGACTGCCA             <  SRR4302545.2520175/94‑1 (MQ=60)
                                                                               AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            >  SRR4302545.6752163/1‑94 (MQ=60)
                                                                                GTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC           <  SRR4302545.9596065/94‑1 (MQ=60)
                                                                                 TAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          >  SRR4302545.6385479/1‑94 (MQ=60)
                                                                                 TAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          <  SRR4302545.4750191/94‑1 (MQ=60)
                                                                                 TAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          >  SRR4302545.10161841/1‑94 (MQ=60)
                                                                                 TAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          <  SRR4302545.2376415/94‑1 (MQ=60)
                                                                                  AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT         <  SRR4302545.8785754/94‑1 (MQ=60)
                                                                                  AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT         <  SRR4302545.10207920/94‑1 (MQ=60)
                                                                                  AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT         >  SRR4302545.7747579/1‑94 (MQ=60)
                                                                                  AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT         >  SRR4302545.7038249/1‑94 (MQ=60)
                                                                                  AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT         >  SRR4302545.7441745/1‑94 (MQ=60)
                                                                                    CCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA       >  SRR4302545.9837773/1‑94 (MQ=60)
                                                                                    CCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA       <  SRR4302545.10404108/94‑1 (MQ=60)
                                                                                    CCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA       >  SRR4302545.4852837/1‑94 (MQ=60)
                                                                                     CAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAA      >  SRR4302545.4942323/1‑94 (MQ=60)
                                                                                     CAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAA      >  SRR4302545.4888957/1‑94 (MQ=60)
                                                                                     CAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAA      >  SRR4302545.1072181/1‑94 (MQ=60)
                                                                                      AAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAA     >  SRR4302545.8820307/1‑94 (MQ=60)
                                                                                      AAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTGGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAA     >  SRR4302545.1872679/1‑94 (MQ=60)
                                                                                       AGGCTCGCTTCCATCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA    >  SRR4302545.1809067/1‑94 (MQ=60)
                                                                                       AGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA    >  SRR4302545.2840000/1‑94 (MQ=60)
                                                                                       AGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA    <  SRR4302545.2742134/94‑1 (MQ=60)
                                                                                       AGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA    >  SRR4302545.10554997/1‑94 (MQ=60)
                                                                                       AGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA    >  SRR4302545.7656819/1‑94 (MQ=60)
                                                                                       AGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA    <  SRR4302545.7921431/94‑1 (MQ=60)
                                                                                       AGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA    >  SRR4302545.8911874/1‑94 (MQ=60)
                                                                                        GGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAT   <  SRR4302545.5664613/94‑1 (MQ=60)
                                                                                             |                                                                                         
ACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT  >  NC_000913/4001393‑4001575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑