Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,001,486 |
2 bp→GC |
coding (316‑317/903 nt) |
rarD ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,001,486 | 0 | C | G | 100.0%
| 797.5
/ NA
| 227 | R106A (CGG→GCG) | rarD | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (116/111); total (116/111) |
| * | NC_000913 | 4,001,487 | 0 | G | C | 99.6%
| 793.1
/ ‑4.8
| 227 | R106A (CGG→GCG) | rarD | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (115/111); minor base T (1/0); total (116/111) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.49e-01 |
Only 100 of 229 total aligned reads displayed.
AGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA > NC_000913/4001399‑4001573
||
aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa < 1:3157406/93‑1 (MQ=255)
aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa > 1:5620751/1‑93 (MQ=255)
aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa > 1:4618513/1‑93 (MQ=255)
aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa > 1:6178429/1‑93 (MQ=255)
aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa < 2:4354286/93‑1 (MQ=255)
ttGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat > 1:4050834/1‑93 (MQ=255)
gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat < 1:3665324/93‑1 (MQ=255)
gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat < 2:4083514/93‑1 (MQ=255)
gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat < 1:1328019/93‑1 (MQ=255)
gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat < 1:5740480/93‑1 (MQ=255)
cATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATg < 1:1592604/93‑1 (MQ=255)
cATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATg < 2:5299271/93‑1 (MQ=255)
cATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATg < 1:1006512/93‑1 (MQ=255)
aTCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATgg < 1:1190253/93‑1 (MQ=255)
aTCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATgg < 2:136789/93‑1 (MQ=255)
aTCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATgg > 1:2018315/1‑93 (MQ=255)
tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt < 2:5994488/93‑1 (MQ=255)
tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt > 1:310742/1‑93 (MQ=255)
tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt < 2:4560388/93‑1 (MQ=255)
tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt > 1:4376130/1‑93 (MQ=255)
tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt < 1:4092487/93‑1 (MQ=255)
ccGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTg > 2:6143532/1‑93 (MQ=255)
cggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGa < 2:4293874/93‑1 (MQ=255)
cggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTGCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGa < 1:2599209/93‑1 (MQ=255)
cggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTg < 2:3793082/93‑1 (MQ=255)
cggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTg < 1:933478/93‑1 (MQ=255)
cggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTg < 2:1872664/93‑1 (MQ=255)
gctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAcca > 2:1198785/3‑92 (MQ=255)
tCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCaccacc > 2:5655764/1‑93 (MQ=255)
gCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCa > 1:1424541/1‑93 (MQ=255)
gCCGAGGAAAATCACCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCa < 2:2505653/93‑1 (MQ=255)
cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGa > 1:5315224/1‑93 (MQ=255)
gAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAt > 2:4323759/1‑93 (MQ=255)
aaaaaaaaCCACCCCCACCAAATTCTCCCCCAGGGGTTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGAt < 2:5744807/89‑1 (MQ=255)
aGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATa > 2:265665/1‑93 (MQ=255)
aaaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAAc > 2:5365777/1‑93 (MQ=255)
aaaaTCATCCCCAGCACAATGTGCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAAc < 2:2559608/93‑1 (MQ=255)
aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACa < 1:4338021/93‑1 (MQ=255)
tcatcCCCAGCACAATGTTCACCAGCGGGTTGATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTa > 1:4701243/1‑93 (MQ=255)
catcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAg > 2:50582/1‑93 (MQ=255)
tcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGcc > 2:4114568/1‑93 (MQ=255)
ccccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCa < 1:5419896/93‑1 (MQ=255)
ccccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCa < 2:1155867/93‑1 (MQ=255)
cccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAg < 2:3292662/93‑1 (MQ=255)
cccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAg < 2:2139505/93‑1 (MQ=255)
cccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAg < 2:3997632/93‑1 (MQ=255)
ccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCATGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGt > 1:6152728/1‑93 (MQ=255)
ccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGt > 2:2838614/1‑93 (MQ=255)
cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGtt < 2:3472842/93‑1 (MQ=255)
cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGtt < 1:2150524/93‑1 (MQ=255)
aGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTg < 2:2771714/93‑1 (MQ=255)
gCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGc > 1:3929044/1‑93 (MQ=255)
cacaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGcc < 2:3200189/93‑1 (MQ=255)
acaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGcca > 1:2479438/1‑93 (MQ=255)
acaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGcca < 2:650583/93‑1 (MQ=255)
aaTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGccacc > 1:1985895/1‑93 (MQ=255)
aTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGccacca > 1:1740615/1‑93 (MQ=255)
aTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGccacca < 2:6088384/93‑1 (MQ=255)
tGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCaa < 1:4260621/93‑1 (MQ=255)
tGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCaa > 1:4674331/1‑93 (MQ=255)
ttCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATc > 1:5839705/1‑93 (MQ=255)
cACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAg > 2:4611547/1‑93 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc < 2:499868/93‑1 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc > 2:3346091/1‑93 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc < 2:1602856/93‑1 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc < 1:4053794/93‑1 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACAACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc > 2:4497458/1‑93 (MQ=255)
ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa < 2:628317/93‑1 (MQ=255)
ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa < 1:2634614/93‑1 (MQ=255)
ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa > 1:6068902/1‑93 (MQ=255)
aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg > 2:3435139/1‑93 (MQ=255)
aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg > 1:651330/1‑93 (MQ=255)
aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg < 1:6397310/93‑1 (MQ=255)
gCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACgg < 1:2117364/93‑1 (MQ=255)
gggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCa < 2:5494249/93‑1 (MQ=255)
gTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga > 2:5337073/1‑93 (MQ=255)
ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag > 2:744281/1‑93 (MQ=255)
ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag > 1:5520217/1‑93 (MQ=255)
ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag > 1:1863953/1‑93 (MQ=255)
taataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAgaga > 1:3479027/1‑93 (MQ=255)
taataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAgaga > 2:5265836/1‑93 (MQ=255)
taataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAgaga > 1:5001630/1‑93 (MQ=255)
aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc < 1:2961693/93‑1 (MQ=255)
aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc > 2:1966248/1‑93 (MQ=255)
aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTCTTCACCACCCAGATAAACAGTAGCCCGTTGCCACCCATCAGCACGGCAGAGAc > 2:4802029/1‑93 (MQ=255)
taaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTg > 2:3967014/1‑93 (MQ=255)
taaAGTAACCAAGGCTCGCTTCCAGCATATGGTAATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTg > 1:6308010/1‑93 (MQ=255)
aaaaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTg < 2:2263932/92‑1 (MQ=255)
aaaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGc < 1:5700129/93‑1 (MQ=255)
aaaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGc > 2:5777611/1‑93 (MQ=255)
aGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCa < 1:3186408/93‑1 (MQ=255)
aGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCa < 2:1754427/93‑1 (MQ=255)
gTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAg < 1:4907575/93‑1 (MQ=255)
gTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAg > 2:2831182/1‑93 (MQ=255)
tAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCCCTAATCAGCACGGCAGAGACTGCCAGc < 2:5075255/93‑1 (MQ=255)
aCCAAGGCTCGCTTCCAGCATATGGGGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAt > 2:3158278/1‑93 (MQ=255)
cAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaa > 2:1514097/1‑93 (MQ=255)
aGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaaa > 2:459803/1‑93 (MQ=255)
aGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaaa > 2:4437028/1‑93 (MQ=255)
ggCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaaaa > 2:2989139/1‑93 (MQ=255)
||
AGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA > NC_000913/4001399‑4001573
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT > NC_000913/4001393‑4001575
|
CCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG < SRR4302537.222425/94‑1 (MQ=60)
ACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG > SRR4302537.5307952/1‑94 (MQ=60)
ACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG < SRR4302537.1594544/94‑1 (MQ=60)
CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC > SRR4302537.4350109/1‑94 (MQ=60)
CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC < SRR4302537.6207438/94‑1 (MQ=60)
AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA > SRR4302537.2828362/1‑94 (MQ=60)
AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA < SRR4302537.80832/94‑1 (MQ=60)
CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGC > SRR4302537.1959280/1‑94 (MQ=60)
CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA > SRR4302537.6220982/1‑94 (MQ=60)
CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA > SRR4302537.5659183/1‑94 (MQ=60)
CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA > SRR4302537.4650499/1‑94 (MQ=60)
ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT > SRR4302537.4079158/1‑94 (MQ=60)
ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT < SRR4302537.3179568/94‑1 (MQ=60)
TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT > SRR4302537.4079342/1‑94 (MQ=60)
TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT < SRR4302537.5011839/94‑1 (MQ=60)
GCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATG < SRR4302537.1337281/94‑1 (MQ=60)
GCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATG < SRR4302537.5779786/94‑1 (MQ=60)
GCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATG < SRR4302537.3691125/94‑1 (MQ=60)
CATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG < SRR4302537.1013459/94‑1 (MQ=60)
CATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG > SRR4302537.2032386/1‑94 (MQ=60)
CATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG < SRR4302537.1603735/94‑1 (MQ=60)
ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT > SRR4302537.4406351/1‑94 (MQ=60)
ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT > SRR4302537.215528/1‑94 (MQ=60)
ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT < SRR4302537.5159622/94‑1 (MQ=60)
ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT < SRR4302537.1198520/94‑1 (MQ=60)
ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT < SRR4302537.3179035/94‑1 (MQ=60)
ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT > SRR4302537.312891/1‑94 (MQ=60)
TCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTG < SRR4302537.4121068/94‑1 (MQ=60)
TCCGACGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTG < SRR4302537.731276/94‑1 (MQ=60)
CGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTGCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT < SRR4302537.2617387/94‑1 (MQ=60)
CGGCGGAATCGCGCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT < SRR4302537.4568458/94‑1 (MQ=60)
GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT > SRR4302537.4377610/1‑94 (MQ=60)
GCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG < SRR4302537.5313715/94‑1 (MQ=60)
CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT < SRR4302537.939910/94‑1 (MQ=60)
GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT > SRR4302537.743924/1‑94 (MQ=60)
GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT > SRR4302537.4341204/1‑94 (MQ=60)
GAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC < SRR4302537.3083001/94‑1 (MQ=60)
CTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACC > SRR4302537.2958355/1‑94 (MQ=60)
CTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTAAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACC < SRR4302537.5759669/94‑1 (MQ=60)
CGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCA > SRR4302537.1434461/1‑94 (MQ=60)
GCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAG < SRR4302537.6224345/94‑1 (MQ=60)
GCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGGTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGGTCACCACCCAG > SRR4302537.43402/1‑94 (MQ=60)
CCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGA > SRR4302537.5351725/1‑94 (MQ=60)
CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGAT < SRR4302537.3193145/94‑1 (MQ=60)
GAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATA > SRR4302537.572641/1‑94 (MQ=60)
GGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAA > SRR4302537.5872164/1‑94 (MQ=60)
AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACA > SRR4302537.150147/1‑94 (MQ=60)
AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACA < SRR4302537.4661930/94‑1 (MQ=60)
AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACA < SRR4302537.1510288/94‑1 (MQ=60)
AAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAG < SRR4302537.4368130/94‑1 (MQ=60)
ATCATCCCCAGCACAATGTTCACCAGCGGGTTGATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTA > SRR4302537.4733764/1‑94 (MQ=60)
TCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGTTAAACAGTAG < SRR4302537.729380/94‑1 (MQ=60)
TCATCCCCAGCACAATGTTCACCAGCGGATTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAG < SRR4302537.4278599/94‑1 (MQ=60)
TCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCA > SRR4302537.131718/1‑94 (MQ=60)
CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAG < SRR4302537.5456831/94‑1 (MQ=60)
CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCATGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGT > SRR4302537.6195053/1‑94 (MQ=60)
CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGT < SRR4302537.6378513/94‑1 (MQ=60)
CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTG < SRR4302537.2647884/94‑1 (MQ=60)
CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTG < SRR4302537.2165683/94‑1 (MQ=60)
AGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGC > SRR4302537.3956497/1‑94 (MQ=60)
AGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGC > SRR4302537.6195117/1‑94 (MQ=60)
CACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCA > SRR4302537.2496867/1‑94 (MQ=60)
ACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCAC > SRR4302537.3299557/1‑94 (MQ=60)
CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACC > SRR4302537.1999694/1‑94 (MQ=60)
CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACA > SRR4302537.3971938/1‑94 (MQ=60)
AATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCA > SRR4302537.1752747/1‑94 (MQ=60)
ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAA < SRR4302537.5503503/94‑1 (MQ=60)
ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAA > SRR4302537.4706667/1‑94 (MQ=60)
ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAA > SRR4302537.1340231/1‑94 (MQ=60)
TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAAT > SRR4302537.5867719/1‑94 (MQ=60)
TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAAT < SRR4302537.4290226/94‑1 (MQ=60)
TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAAT < SRR4302537.2561463/94‑1 (MQ=60)
GTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATC > SRR4302537.5879747/1‑94 (MQ=60)
TCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAG < SRR4302537.5377601/94‑1 (MQ=60)
CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC > SRR4302537.3952427/1‑94 (MQ=60)
ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA > SRR4302537.6110599/1‑94 (MQ=60)
ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA > SRR4302537.1126268/1‑94 (MQ=60)
ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA < SRR4302537.4082135/94‑1 (MQ=60)
CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC > SRR4302537.5966569/1‑94 (MQ=60)
CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC < SRR4302537.2653050/94‑1 (MQ=60)
CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG > SRR4302537.655771/1‑94 (MQ=60)
AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG < SRR4302537.1658117/94‑1 (MQ=60)
AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG < SRR4302537.6440868/94‑1 (MQ=60)
AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG < SRR4302537.2104606/94‑1 (MQ=60)
GCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGC < SRR4302537.4685951/94‑1 (MQ=60)
GCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGC < SRR4302537.2132278/94‑1 (MQ=60)
CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA < SRR4302537.2196400/94‑1 (MQ=60)
GGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGA < SRR4302537.4876809/94‑1 (MQ=60)
GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG > SRR4302537.1898541/1‑94 (MQ=60)
GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG > SRR4302537.1876932/1‑94 (MQ=60)
GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG > SRR4302537.5557904/1‑94 (MQ=60)
TTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGA > SRR4302537.3503644/1‑94 (MQ=60)
TTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGA > SRR4302537.5036083/1‑94 (MQ=60)
AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT > SRR4302537.2026317/1‑94 (MQ=60)
AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT < SRR4302537.2982486/94‑1 (MQ=60)
ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTAATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTG > SRR4302537.6351204/1‑94 (MQ=60)
TAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGC > SRR4302537.1805854/1‑94 (MQ=60)
TAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGC < SRR4302537.6173814/94‑1 (MQ=60)
AAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCC < SRR4302537.5739135/94‑1 (MQ=60)
AAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCA < SRR4302537.3515171/94‑1 (MQ=60)
AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG < SRR4302537.3208823/94‑1 (MQ=60)
GTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC < SRR4302537.6275847/94‑1 (MQ=60)
GTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC < SRR4302537.4941447/94‑1 (MQ=60)
AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT < SRR4302537.410187/94‑1 (MQ=60)
AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT > SRR4302537.3328699/1‑94 (MQ=60)
AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGACAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT > SRR4302537.5653268/1‑94 (MQ=60)
CCAAGGCTCGTTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA > SRR4302537.2447858/1‑94 (MQ=60)
CCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA > SRR4302537.5611960/1‑94 (MQ=60)
CAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAA > SRR4302537.4729944/1‑94 (MQ=60)
AAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAA > SRR4302537.6461781/1‑94 (MQ=60)
AGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA > SRR4302537.4495430/1‑94 (MQ=60)
AGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA > SRR4302537.1284876/1‑94 (MQ=60)
AGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA > SRR4302537.3478508/1‑94 (MQ=60)
GGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAT < SRR4302537.4048381/94‑1 (MQ=60)
GCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAGT > SRR4302537.1600370/1‑94 (MQ=60)
|
ACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT > NC_000913/4001393‑4001575
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
