Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCAAATCTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGC  >  NC_000913/2225876‑2226062
                                                                                             |                                                                                             
GCAAATCTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGG                                                                                               >  SRR4302545.10438823/1‑94 (MQ=60)
 CAAATCTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGAC                                                                                              <  SRR4302545.4407987/94‑1 (MQ=60)
  AAATCTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCT                                                                                             >  SRR4302545.577519/1‑94 (MQ=60)
   AATCTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTT                                                                                            >  SRR4302545.9048849/1‑94 (MQ=60)
   AATCTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTT                                                                                            <  SRR4302545.957856/94‑1 (MQ=60)
   AATCTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTT                                                                                            <  SRR4302545.7159559/94‑1 (MQ=60)
    ATCTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTT                                                                                           >  SRR4302545.7627665/1‑94 (MQ=60)
      CTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGT                                                                                         >  SRR4302545.10597262/1‑94 (MQ=60)
      CTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGT                                                                                         <  SRR4302545.10355516/94‑1 (MQ=60)
       TGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTC                                                                                        >  SRR4302545.4649750/1‑94 (MQ=60)
       TGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTC                                                                                        <  SRR4302545.7591146/94‑1 (MQ=60)
       TGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTC                                                                                        >  SRR4302545.5769616/1‑94 (MQ=60)
        GCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCT                                                                                       <  SRR4302545.6689726/94‑1 (MQ=60)
        GCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCT                                                                                       >  SRR4302545.10503124/1‑94 (MQ=60)
         CCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTG                                                                                      <  SRR4302545.10325794/94‑1 (MQ=60)
         CCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTG                                                                                      >  SRR4302545.6676561/1‑94 (MQ=60)
         CCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTG                                                                                      <  SRR4302545.8739924/94‑1 (MQ=60)
          CCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGG                                                                                     >  SRR4302545.4318511/1‑94 (MQ=60)
            GCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTT                                                                                   >  SRR4302545.4209783/1‑94 (MQ=60)
            GCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTT                                                                                   >  SRR4302545.335756/1‑94 (MQ=60)
              CGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTAT                                                                                 >  SRR4302545.7684727/1‑94 (MQ=60)
              CGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTAT                                                                                 >  SRR4302545.2638765/1‑94 (MQ=60)
              CGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTAT                                                                                 <  SRR4302545.4506896/94‑1 (MQ=60)
              CGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAAAGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTAT                                                                                 >  SRR4302545.6397422/1‑94 (MQ=60)
               GGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATT                                                                                >  SRR4302545.10384815/1‑94 (MQ=60)
               GGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATT                                                                                <  SRR4302545.6109284/94‑1 (MQ=60)
                GGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTT                                                                               <  SRR4302545.7879198/94‑1 (MQ=60)
                 GCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTG                                                                              <  SRR4302545.4092600/94‑1 (MQ=60)
                  CCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGT                                                                             >  SRR4302545.7528043/1‑94 (MQ=60)
                  CCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGT                                                                             >  SRR4302545.7528042/1‑94 (MQ=60)
                    AGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAA                                                                           >  SRR4302545.85670/1‑94 (MQ=60)
                     GTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAG                                                                          <  SRR4302545.10317798/94‑1 (MQ=60)
                      TAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGT                                                                         >  SRR4302545.7261707/1‑94 (MQ=60)
                        AGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGC                                                                       >  SRR4302545.8944969/1‑94 (MQ=60)
                        AGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGC                                                                       <  SRR4302545.2401810/94‑1 (MQ=60)
                          GAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGC                                                                     >  SRR4302545.823626/1‑94 (MQ=60)
                           AGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCT                                                                    >  SRR4302545.688990/1‑94 (MQ=60)
                            GTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGTTTCAATGCCTTTGTCGGGTT‑TTTGTAAGTGGGCTTA                                                                  >  SRR4302545.983976/1‑94 (MQ=60)
                            GTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTtttaatgcggct                                                                   >  SRR4302545.10607121/1‑82 (MQ=60)
                            GTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTT                                                                   <  SRR4302545.7927437/94‑1 (MQ=60)
                              ACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAA                                                                 <  SRR4302545.2668853/94‑1 (MQ=60)
                              ACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGGTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAA                                                                 >  SRR4302545.7263510/1‑94 (MQ=60)
                               CCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAAC                                                                <  SRR4302545.1382719/94‑1 (MQ=60)
                                CCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACC                                                               <  SRR4302545.5490459/94‑1 (MQ=60)
                                CCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACC                                                               <  SRR4302545.1411604/94‑1 (MQ=60)
                                CCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACC                                                               <  SRR4302545.782869/94‑1 (MQ=60)
                                 CCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCG                                                              <  SRR4302545.5129983/94‑1 (MQ=60)
                                 CCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCG                                                              <  SRR4302545.5129639/94‑1 (MQ=60)
                                 CCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCG                                                              >  SRR4302545.342379/1‑94 (MQ=60)
                                 CCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCG                                                              >  SRR4302545.4257812/1‑94 (MQ=60)
                                  CAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGT                                                             >  SRR4302545.4648603/1‑94 (MQ=60)
                                    GTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGC                                                           >  SRR4302545.5542587/1‑94 (MQ=60)
                                    GTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGC                                                           >  SRR4302545.9401105/1‑94 (MQ=60)
                                    GTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGC                                                           >  SRR4302545.1903373/1‑94 (MQ=60)
                                      TCATCAGGAATCTGGCTTGCCAATTTCCGCAACGCGACCGGTTTAAGCTTCCATGGCTTTGTCTGGTTATTTGTAAGTGCGCTCAACCGTGCCT                                                         <  SRR4302545.1064033/94‑1 (MQ=60)
                                      TCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCT                                                         <  SRR4302545.6221772/94‑1 (MQ=60)
                                      TCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCT                                                         <  SRR4302545.7139554/94‑1 (MQ=60)
                                      TCATCAGGAAGCTGCCTTGCCACGTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATGTGTAAGTGCGCTTAACCGTGCCT                                                         <  SRR4302545.7139553/94‑1 (MQ=60)
                                        ATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCA                                                       >  SRR4302545.3012018/1‑94 (MQ=60)
                                        ATCAGGAAGCTGGCCTGCCACTTTCGGCTACGCTACCGGTTTAAGCTTCAATGACTTTGTCTAGTTATTTGTATGTTCGCTTAACCCTGGCTCA                                                       >  SRR4302545.6164527/1‑94 (MQ=60)
                                         TCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTACGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTACCCGTGCatcca                                                      <  SRR4302545.9688923/94‑6 (MQ=60)
                                          CAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAAT                                                     <  SRR4302545.1221279/94‑1 (MQ=60)
                                           AGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATA                                                    <  SRR4302545.5137992/94‑1 (MQ=60)
                                           AGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATA                                                    >  SRR4302545.8215174/1‑94 (MQ=60)
                                            ggaacctaggttacccaTTTCGGCAACTCGATCGGTTTAAGCTTCAATGGCTTTGTCCGGTTATTTGTAAGTGCGCTTCACCGTGactctatac                                                   >  SRR4302545.7405338/18‑85 (MQ=54)
                                            GGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAA                                                   <  SRR4302545.7474708/94‑1 (MQ=60)
                                             GAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAAT                                                  >  SRR4302545.518053/1‑94 (MQ=60)
                                                GCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTT                                               <  SRR4302545.2757648/94‑1 (MQ=60)
                                                 CTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTC                                              <  SRR4302545.4312529/94‑1 (MQ=60)
                                                 CTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTC                                              >  SRR4302545.4613380/1‑94 (MQ=60)
                                                  TGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCA                                             <  SRR4302545.5934080/94‑1 (MQ=60)
                                                    GCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATT                                           >  SRR4302545.5130293/1‑94 (MQ=60)
                                                     CTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTT                                          <  SRR4302545.985504/94‑1 (MQ=60)
                                                     CTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTT                                          >  SRR4302545.4249424/1‑94 (MQ=60)
                                                     CTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTT                                          >  SRR4302545.841357/1‑94 (MQ=60)
                                                      TTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGTCTCAATAATTTTCATTTT                                         <  SRR4302545.5271376/94‑1 (MQ=60)
                                                      TTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTT                                         <  SRR4302545.2554017/94‑1 (MQ=60)
                                                      TTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTT                                         >  SRR4302545.8880815/1‑94 (MQ=60)
                                                      TTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTT                                         <  SRR4302545.5271375/94‑1 (MQ=60)
                                                         CCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCC                                      >  SRR4302545.5234165/1‑94 (MQ=60)
                                                         CCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCC                                      >  SRR4302545.6177427/1‑94 (MQ=60)
                                                          CACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCC                                     <  SRR4302545.9156640/94‑1 (MQ=60)
                                                          CACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCC                                     >  SRR4302545.10094947/1‑94 (MQ=60)
                                                          CACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCC                                     <  SRR4302545.10105977/94‑1 (MQ=60)
                                                                CGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACA                               >  SRR4302545.7971727/1‑94 (MQ=60)
                                                                CGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACA                               >  SRR4302545.9149235/1‑94 (MQ=60)
                                                                   CAACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCG                            >  SRR4302545.10279803/1‑94 (MQ=60)
                                                                     ACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTT                          <  SRR4302545.1971742/94‑1 (MQ=60)
                                                                     ACGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTT                          <  SRR4302545.1971740/94‑1 (MQ=60)
                                                                      CGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTG                         <  SRR4302545.5487087/94‑1 (MQ=60)
                                                                      CGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTG                         >  SRR4302545.8635802/1‑94 (MQ=60)
                                                                      CGCGACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAA                                                                           >  SRR4302545.6387037/1‑44 (MQ=60)
                                                                         GACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGC                      <  SRR4302545.8857646/94‑1 (MQ=60)
                                                                         GACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCGTTTTCCCCGCGACATCGTTGAGC                      >  SRR4302545.5973025/1‑94 (MQ=60)
                                                                         GACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGC                      >  SRR4302545.5079569/1‑94 (MQ=60)
                                                                          ACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCT                     >  SRR4302545.8699059/1‑94 (MQ=60)
                                                                          ACCGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCT                     <  SRR4302545.4149699/94‑1 (MQ=60)
                                                                          ACCGGTTTAAGCTTCAATGGCGTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCT                     <  SRR4302545.8385896/94‑1 (MQ=60)
                                                                           CCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGGGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTG                    <  SRR4302545.4810437/94‑1 (MQ=60)
                                                                            CGGTTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGC                   >  SRR4302545.1875235/1‑94 (MQ=60)
                                                                            CGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGC                   >  SRR4302545.9171860/1‑94 (MQ=60)
                                                                             GGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCT                  >  SRR4302545.1878058/1‑94 (MQ=60)
                                                                              GTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTG                 <  SRR4302545.7180125/94‑1 (MQ=60)
                                                                              GTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTG                 >  SRR4302545.3898681/1‑94 (MQ=60)
                                                                               TTTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGC                <  SRR4302545.2541685/94‑1 (MQ=60)
                                                                                TTAAGCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCC               >  SRR4302545.1794442/1‑94 (MQ=60)
                                                                                TTAAGCTTCAATGGCTTGGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGAGATCGTTGAGCTGCTGCC               <  SRR4302545.8420533/94‑1 (MQ=60)
                                                                                TTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCC               >  SRR4302545.9347404/1‑94 (MQ=60)
                                                                                 TAAGCTTCAATGACTTTGTCTGTTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTCCCCCGCGACATCGTTGAGCTGCTGCCG              <  SRR4302545.10487148/94‑1 (MQ=60)
                                                                                 TAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCG              >  SRR4302545.653675/1‑94 (MQ=60)
                                                                                   AGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTACCCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGG            <  SRR4302545.5688297/94‑1 (MQ=60)
                                                                                    GCTTCAATGGCTTTGTCTGTTTAGTTGTAAGTGCGCTTAACGGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGT           <  SRR4302545.4904788/94‑1 (MQ=60)
                                                                                    GCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGT           <  SRR4302545.4430867/94‑1 (MQ=60)
                                                                                    GCTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCAACATCGTTGAGCTGCTGCCGGGT           <  SRR4302545.4904789/94‑1 (MQ=60)
                                                                                    GCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGT           <  SRR4302545.1031216/94‑1 (MQ=60)
                                                                                     CTTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTT          <  SRR4302545.10164423/94‑1 (MQ=60)
                                                                                     CTTCAATGACTTTTGCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTT          <  SRR4302545.1437584/94‑1 (MQ=60)
                                                                                      TTCAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTT         >  SRR4302545.1830863/1‑94 (MQ=60)
                                                                                      TTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTT         <  SRR4302545.1654576/94‑1 (MQ=60)
                                                                                       TCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTT        >  SRR4302545.4186153/1‑94 (MQ=60)
                                                                                        CAATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGGTTTG       >  SRR4302545.4058522/1‑94 (MQ=60)
                                                                                         AATGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGC      >  SRR4302545.7800184/1‑94 (MQ=60)
                                                                                         AATGGCTTTGCCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTTAGCTGCTGCCGGGTTTTGC      >  SRR4302545.7800185/1‑94 (MQ=60)
                                                                                          ATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCT     >  SRR4302545.7445169/1‑94 (MQ=60)
                                                                                           TGGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTG    <  SRR4302545.978858/94‑1 (MQ=60)
                                                                                            GGCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGG   <  SRR4302545.9912904/94‑1 (MQ=60)
                                                                                            GACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGG   >  SRR4302545.512362/1‑94 (MQ=60)
                                                                                             GCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGC  <  SRR4302545.5527104/94‑1 (MQ=60)
                                                                                             GCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGC  <  SRR4302545.5526794/94‑1 (MQ=60)
                                                                                             GCTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTAATTTTCCCAGCGACATCGTTAAGCTGCTGCCGGGTTTTGCTGGC  >  SRR4302545.952324/1‑94 (MQ=60)
                                                                                             ACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGC  >  SRR4302545.2797163/1‑94 (MQ=60)
                                                                                             |                                                                                             
GCAAATCTGCCCGCCGGGCCAGTAAGGAGTACCCCAGTTCATCAGGAAGCTGGCTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCTGGTTATTTGTAAGTGCGCTTAACCGTGCCTCAATAATTTTCATTTTCCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGC  >  NC_000913/2225876‑2226062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑