Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	41,228	A→C	I235S (ATC→AGC)	caiT ←	putative carnitine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	41,228	0	A	C	100.0%	878.2 / NA	249	I235S (ATC→AGC)	caiT	putative carnitine transporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (116/133); total (116/133)

Only 100 of 262 total aligned reads displayed.

AGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGT  >  NC_000913/41138‑41316

aGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAatgctg                                                                                        >  1:3392347/1‑93 (MQ=255)

 ggTAACTACTCGCGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAAtgctga                                                                                       <  2:5161759/93‑1 (MQ=255)

 ggTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAAtgctga                                                                                       >  1:5033431/1‑93 (MQ=255)

 ggTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAAtgctga                                                                                       <  2:3912148/93‑1 (MQ=255)

  gTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATgctgat                                                                                      <  2:2020528/93‑1 (MQ=255)

   aaaCTACGCACGTCACTGGCGATACGTACCCCTTTTTGCCGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATa                                                                                     >  2:5312184/2‑93 (MQ=255)

    aaCTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAg                                                                                    >  2:6141730/1‑93 (MQ=255)

     aCTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGc                                                                                   >  2:2796453/1‑93 (MQ=255)

     aCTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGc                                                                                   >  1:2787088/1‑93 (MQ=255)

        aCGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTc                                                                                <  2:30325/93‑1 (MQ=255)

         cGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTcc                                                                               <  1:2149416/93‑1 (MQ=255)

         cGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTcc                                                                               <  1:3221377/93‑1 (MQ=255)

          gCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCa                                                                              >  1:1397839/1‑93 (MQ=255)

           cACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAg                                                                             <  1:767633/93‑1 (MQ=255)

            aCGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGt                                                                            >  1:3842702/1‑93 (MQ=255)

            aCGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATACAGCAGGTAATGCTGATAGCGTCCAGt                                                                            >  1:3927289/1‑93 (MQ=255)

             cGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGtt                                                                           <  2:307965/93‑1 (MQ=255)

             cGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGtt                                                                           <  1:1361040/93‑1 (MQ=255)

               tCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGc                                                                         <  1:5281506/93‑1 (MQ=255)

               tCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGc                                                                         >  2:346025/1‑93 (MQ=255)

                cACTGGCGATACGTACCCCTTTTTGGAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCa                                                                        <  1:3355291/93‑1 (MQ=255)

                 aCTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAg                                                                       <  1:1966449/93‑1 (MQ=255)

                   tGGCGATACGTGCCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAggg                                                                     <  2:5139927/93‑1 (MQ=255)

                     gCGATACTTGCCCCTTTTTGCAGACCACAAGCGACGCAAATGGCGTTGAGGATAATCAAGCAGGTAATGCTGATAGCGTACAGTTGCAGGGTa                                                                   <  2:1686786/93‑1 (MQ=255)

                       gATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATg                                                                 <  2:1980915/93‑1 (MQ=255)

                        aTACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGc                                                                <  1:679539/93‑1 (MQ=255)

                         tACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCg                                                               <  1:3498367/93‑1 (MQ=255)

                          aCGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCgg                                                              >  1:880163/1‑93 (MQ=255)

                          aCGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCgg                                                              >  2:5698664/1‑93 (MQ=255)

                            gTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGaa                                                            >  1:5588866/1‑93 (MQ=255)

                             tACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAAt                                                           <  1:646645/93‑1 (MQ=255)

                              aCCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATg                                                          >  1:2443986/1‑93 (MQ=255)

                              aCCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATg                                                          <  2:6455149/93‑1 (MQ=255)

                               ccccTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGc                                                         >  1:6127808/1‑93 (MQ=255)

                                cccTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGcc                                                        <  1:6025926/93‑1 (MQ=255)

                                   tttttGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCaaa                                                     >  2:3003052/1‑93 (MQ=255)

                                    ttttGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAaac                                                    <  2:742497/93‑1 (MQ=255)

                                    ttttGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAaac                                                    <  1:3190364/93‑1 (MQ=255)

                                     tttGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAaaca                                                   >  2:5676198/1‑93 (MQ=255)

                                     tttGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAaaca                                                   <  2:5999986/93‑1 (MQ=255)

                                     tttGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAaaca                                                   >  1:1227980/1‑93 (MQ=255)

                                     tttGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAaaca                                                   <  2:1419853/93‑1 (MQ=255)

                                      ttGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAaacaa                                                  >  1:3110373/1‑93 (MQ=255)

                                       tGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAaacaac                                                 <  1:2178944/93‑1 (MQ=255)

                                       tGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAaacaac                                                 <  2:2083405/93‑1 (MQ=255)

                                        gCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAAcc                                                >  2:3749021/1‑93 (MQ=255)

                                        gCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTCGCAGGCTATGCGGAATGCCAAACAAcc                                                <  1:1659164/93‑1 (MQ=255)

                                          aGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCAt                                              >  2:5953905/1‑93 (MQ=255)

                                           taCCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCAtt                                             <  1:6204037/92‑1 (MQ=255)

                                           gcccGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCAtt                                             <  2:3389471/91‑1 (MQ=255)

                                           gACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCAtt                                             <  2:5899066/93‑1 (MQ=255)

                                            aCCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTg                                            >  2:2767301/1‑93 (MQ=255)

                                              cGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCa                                          <  1:5806131/93‑1 (MQ=255)

                                               gCAAGCGACGCATATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCAt                                         >  1:224910/1‑93 (MQ=255)

                                               gCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCAt                                         >  2:1516136/1‑93 (MQ=255)

                                                 aaGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATac                                       <  1:2904623/93‑1 (MQ=255)

                                                  aGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATaca                                      <  1:638885/93‑1 (MQ=255)

                                                  aGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATaca                                      <  2:2721321/93‑1 (MQ=255)

                                                   gCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATacac                                     <  2:498239/93‑1 (MQ=255)

                                                    cGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACt                                    <  2:3951962/93‑1 (MQ=255)

                                                    cGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACt                                    <  2:3676948/93‑1 (MQ=255)

                                                     gACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTc                                   >  2:2367493/1‑93 (MQ=255)

                                                     gACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTc                                   <  2:212429/93‑1 (MQ=255)

                                                      aCGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCg                                  <  2:4850324/93‑1 (MQ=255)

                                                       cGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCgg                                 <  1:5380113/93‑1 (MQ=255)

                                                       cGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCgg                                 >  1:4435487/1‑93 (MQ=255)

                                                        gCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGt                                >  2:3264099/1‑93 (MQ=255)

                                                         cAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTc                               <  2:2671373/93‑1 (MQ=255)

                                                         cAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTc                               >  2:4272812/1‑93 (MQ=255)

                                                         cAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTc                               >  1:6060862/1‑93 (MQ=255)

                                                          aaaTGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCa                              <  1:5981907/93‑1 (MQ=255)

                                                          aaaTGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCa                              >  2:1115749/1‑93 (MQ=255)

                                                            aTGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCAcc                            >  1:3856054/1‑93 (MQ=255)

                                                             tGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCa                           <  2:355102/93‑1 (MQ=255)

                                                             tGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCa                           <  1:1801519/93‑1 (MQ=255)

                                                             tGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCa                           >  1:3454717/1‑93 (MQ=255)

                                                              ggCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAg                          <  2:4750827/93‑1 (MQ=255)

                                                              ggCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAg                          <  2:3606796/93‑1 (MQ=255)

                                                              ggCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAg                          <  2:5531687/93‑1 (MQ=255)

                                                              ggCGTTGAGGATAATCCAGCAGGCAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAg                          >  1:366423/1‑93 (MQ=255)

                                                               gCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAgc                         <  2:2500273/93‑1 (MQ=255)

                                                               gCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAgc                         <  2:5810464/93‑1 (MQ=255)

                                                               gCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCACGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAgc                         >  2:604346/1‑93 (MQ=255)

                                                                 gTTTAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAgcgg                       >  2:1689017/1‑93 (MQ=255)

                                                                  ttGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAgcggc                      >  2:5373339/1‑93 (MQ=255)

                                                                       gATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGc                 >  1:4673457/1‑93 (MQ=255)

                                                                       gATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGc                 >  1:4226863/1‑93 (MQ=255)

                                                                       gATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGc                 >  2:351282/1‑93 (MQ=255)

                                                                         tAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCaa               >  1:4893857/1‑93 (MQ=255)

                                                                         tAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCaa               <  1:1580961/93‑1 (MQ=255)

                                                                         tAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCaa               <  1:5892807/93‑1 (MQ=255)

                                                                             ccAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGcc           <  1:1533582/93‑1 (MQ=255)

                                                                             ccAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGcc           <  1:1114579/93‑1 (MQ=255)

                                                                              cagcagGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGccc          <  1:2495668/93‑1 (MQ=255)

                                                                              cagcagGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGccc          >  1:3948494/1‑93 (MQ=255)

                                                                                gcagGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAg        >  1:186004/1‑93 (MQ=255)

                                                                                 cagGTAATTCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGa       >  2:6300909/1‑93 (MQ=255)

                                                                                 cagGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGa       <  1:2705782/93‑1 (MQ=255)

                                                                                   ggTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACt     >  1:439606/1‑93 (MQ=255)

                                                                                    gTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTg    >  1:5749785/1‑93 (MQ=255)

AGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGT  >  NC_000913/41138‑41316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCAGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTACCC  >  NC_000913/41136‑41320

TCAGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCT                                                                                             <  SRR4302537.3960836/94‑1 (MQ=60)

 CAGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTG                                                                                            <  SRR4302537.1031459/94‑1 (MQ=60)

 CAGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTG                                                                                            <  SRR4302537.5380694/94‑1 (MQ=60)

 CAGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTG                                                                                            >  SRR4302537.3416373/1‑94 (MQ=60)

 CAGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTG                                                                                            >  SRR4302537.3331531/1‑94 (MQ=60)

  AGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGA                                                                                           <  SRR4302537.4438178/94‑1 (MQ=60)

  AGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGA                                                                                           >  SRR4302537.5068083/1‑94 (MQ=60)

  AGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGA                                                                                           >  SRR4302537.2245044/1‑94 (MQ=60)

    GTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATA                                                                                         <  SRR4302537.4082378/94‑1 (MQ=60)

     TAGCTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAG                                                                                        <  SRR4302537.1251375/94‑1 (MQ=60)

     TAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAG                                                                                        <  SRR4302537.3235304/94‑1 (MQ=60)

     TAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAG                                                                                        <  SRR4302537.2076087/94‑1 (MQ=60)

     TAACTACGCACGTCACTGGCGATACGTACCCCTTGTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAG                                                                                        <  SRR4302537.5819489/94‑1 (MQ=60)

      AACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGC                                                                                       >  SRR4302537.2806579/1‑94 (MQ=60)

      AACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGC                                                                                       >  SRR4302537.2520683/1‑94 (MQ=60)

        CTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGT                                                                                     >  SRR4302537.304655/1‑94 (MQ=60)

          ACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCC                                                                                   <  SRR4302537.753971/94‑1 (MQ=60)

          ACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCC                                                                                   <  SRR4302537.622243/94‑1 (MQ=60)

           CGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCA                                                                                  >  SRR4302537.1407581/1‑94 (MQ=60)

           CGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCA                                                                                  <  SRR4302537.5771258/94‑1 (MQ=60)

           CGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCA                                                                                  <  SRR4302537.3244042/94‑1 (MQ=60)

           CGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCA                                                                                  <  SRR4302537.2164564/94‑1 (MQ=60)

            GCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAG                                                                                 <  SRR4302537.1733065/94‑1 (MQ=60)

            GCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAG                                                                                 >  SRR4302537.2924581/1‑94 (MQ=60)

             CACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGT                                                                                >  SRR4302537.3869612/1‑94 (MQ=60)

             CACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGT                                                                                >  SRR4302537.5235614/1‑94 (MQ=60)

             CACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGT                                                                                <  SRR4302537.772890/94‑1 (MQ=60)

             CACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATACAGCAGGTAATGCTGATAGCGTCCAGT                                                                                >  SRR4302537.3954730/1‑94 (MQ=60)

               CGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTG                                                                              <  SRR4302537.1370523/94‑1 (MQ=60)

                GTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGC                                                                             >  SRR4302537.1182133/1‑94 (MQ=60)

                 TCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCA                                                                            <  SRR4302537.5317836/94‑1 (MQ=60)

                  CACTGGCGATACGTACCCCTTTTTGGAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAG                                                                           <  SRR4302537.3379056/94‑1 (MQ=60)

                  CACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATACTCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAG                                                                           >  SRR4302537.6322553/1‑94 (MQ=60)

                  CACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAG                                                                           <  SRR4302537.3945988/94‑1 (MQ=60)

                  CACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAG                                                                           >  SRR4302537.2740980/1‑94 (MQ=60)

                   ACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGG                                                                          <  SRR4302537.4878749/94‑1 (MQ=60)

                   ACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGG                                                                          >  SRR4302537.1357224/1‑94 (MQ=60)

                   ACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGG                                                                          <  SRR4302537.1980121/94‑1 (MQ=60)

                   ACTGGCGATACGTACCCCTTTTTACAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGG                                                                          >  SRR4302537.1627967/1‑94 (MQ=60)

                    CTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGG                                                                         <  SRR4302537.1911388/94‑1 (MQ=60)

                     TGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGT                                                                        >  SRR4302537.3607055/1‑94 (MQ=60)

                        CGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATG                                                                     >  SRR4302537.217576/1‑94 (MQ=60)

                        CGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGTTATG                                                                     >  SRR4302537.5353629/1‑94 (MQ=60)

                          ATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCG                                                                   >  SRR4302537.6216809/1‑94 (MQ=60)

                          ATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCG                                                                   <  SRR4302537.684197/94‑1 (MQ=60)

                           TACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGG                                                                  >  SRR4302537.886221/1‑94 (MQ=60)

                           TACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGG                                                                  <  SRR4302537.661694/94‑1 (MQ=60)

                           TACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGG                                                                  <  SRR4302537.3523119/94‑1 (MQ=60)

                             CGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAA                                                                >  SRR4302537.5627079/1‑94 (MQ=60)

                              GTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAAT                                                               >  SRR4302537.77887/1‑94 (MQ=60)

                              GTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAAT                                                               <  SRR4302537.3908154/94‑1 (MQ=60)

                              GTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGAGGAAT                                                               >  SRR4302537.3956900/1‑94 (MQ=60)

                               TACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATG                                                              <  SRR4302537.651051/94‑1 (MQ=60)

                               TACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATG                                                              >  SRR4302537.2461186/1‑94 (MQ=60)

                                ACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGC                                                             >  SRR4302537.6169923/1‑94 (MQ=60)

                                 CCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCC                                                            <  SRR4302537.1551355/94‑1 (MQ=60)

                                 CCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGCTGCAGGGTATGCGGCATGCC                                                            >  SRR4302537.1522527/1‑94 (MQ=60)

                                  CCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCA                                                           >  SRR4302537.3284123/1‑94 (MQ=60)

                                  CCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCA                                                           <  SRR4302537.6067334/94‑1 (MQ=60)

                                   CCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAA                                                          >  SRR4302537.5600969/1‑94 (MQ=60)

                                   CCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAA                                                          >  SRR4302537.5889262/1‑94 (MQ=60)

                                     TTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAAC                                                        <  SRR4302537.3397914/94‑1 (MQ=60)

                                      TTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACA                                                       <  SRR4302537.3212801/94‑1 (MQ=60)

                                      TTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACA                                                       >  SRR4302537.1236520/1‑94 (MQ=60)

                                       TTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAA                                                      >  SRR4302537.3132095/1‑94 (MQ=60)

                                        TTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAAC                                                     <  SRR4302537.1371178/94‑1 (MQ=60)

                                         TGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACC                                                    <  SRR4302537.2400302/94‑1 (MQ=60)

                                         TGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACC                                                    <  SRR4302537.2007661/94‑1 (MQ=60)

                                         TGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACC                                                    <  SRR4302537.2194301/94‑1 (MQ=60)

                                          GCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCA                                                   <  SRR4302537.729935/94‑1 (MQ=60)

                                          GCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTCGCAGGCTATGCGGAATGCCAAACAACCA                                                   <  SRR4302537.1670796/94‑1 (MQ=60)

                                             TACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTG                                                <  SRR4302537.6246798/94‑1 (MQ=60)

                                             GACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTG                                                <  SRR4302537.229416/94‑1 (MQ=60)

                                             GACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTG                                                <  SRR4302537.49242/94‑1 (MQ=60)

                                             GACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTG                                                >  SRR4302537.6068813/1‑94 (MQ=60)

                                               CCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCA                                              <  SRR4302537.59074/94‑1 (MQ=60)

                                                CGCAAGCGACGCATATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCAT                                             >  SRR4302537.226509/1‑94 (MQ=60)

                                                CGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCAT                                             <  SRR4302537.5845946/94‑1 (MQ=60)

                                                CGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCAT                                             <  SRR4302537.927695/94‑1 (MQ=60)

                                                  CAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACACCCATTGCAAAC                                           >  SRR4302537.1832937/1‑94 (MQ=60)

                                                  CAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATAC                                           >  SRR4302537.3499025/1‑94 (MQ=60)

                                                   AAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACA                                          <  SRR4302537.2925028/94‑1 (MQ=60)

                                                   AAGCGACGCAAAGCGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACA                                          <  SRR4302537.6261050/94‑1 (MQ=60)

                                                    AGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACAC                                         <  SRR4302537.643234/94‑1 (MQ=60)

                                                     GCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACT                                        <  SRR4302537.4383567/94‑1 (MQ=60)

                                                     GCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACT                                        <  SRR4302537.3460538/94‑1 (MQ=60)

                                                       GACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCG                                      >  SRR4302537.3459042/1‑94 (MQ=60)

                                                        ACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGG                                     >  SRR4302537.4466115/1‑94 (MQ=60)

                                                         CGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGT                                    <  SRR4302537.5416905/94‑1 (MQ=60)

                                                          GCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTC                                   >  SRR4302537.4210937/1‑94 (MQ=60)

                                                          GCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTC                                   >  SRR4302537.6075666/1‑94 (MQ=60)

                                                          GCAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTC                                   >  SRR4302537.6102500/1‑94 (MQ=60)

                                                          GCAAATGGCGTTGAGGATAACCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTC                                   <  SRR4302537.1920510/94‑1 (MQ=60)

                                                           CAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCA                                  >  SRR4302537.2246931/1‑94 (MQ=60)

                                                           CAAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCA                                  >  SRR4302537.2485400/1‑94 (MQ=60)

                                                            AAATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCAC                                 <  SRR4302537.6022971/94‑1 (MQ=60)

                                                             AATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACC                                >  SRR4302537.3883044/1‑94 (MQ=60)

                                                              ATGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCA                               >  SRR4302537.3479152/1‑94 (MQ=60)

                                                               TGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAG                              <  SRR4302537.1814087/94‑1 (MQ=60)

                                                               TGGCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAG                              <  SRR4302537.1574158/94‑1 (MQ=60)

                                                               TGGCGTTGAGGATAATCCAGCAGGCAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAG                              >  SRR4302537.368968/1‑94 (MQ=60)

                                                                 GCGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCG                            <  SRR4302537.3872732/94‑1 (MQ=60)

                                                                  CGTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGG                           >  SRR4302537.3230066/1‑94 (MQ=60)

                                                                   GTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGC                          >  SRR4302537.5980674/1‑94 (MQ=60)

                                                                   GTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGC                          >  SRR4302537.6024480/1‑94 (MQ=60)

                                                                   GTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGC                          >  SRR4302537.1430185/1‑94 (MQ=60)

                                                                   GTTGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGC                          >  SRR4302537.3586043/1‑94 (MQ=60)

                                                                     TGAGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGT                        >  SRR4302537.1777989/1‑94 (MQ=60)

                                                                       AGTATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGG                      <  SRR4302537.5717803/94‑1 (MQ=60)

                                                                       AGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGG                      >  SRR4302537.3804757/1‑94 (MQ=60)

                                                                       AGGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGG                      >  SRR4302537.4306808/1‑94 (MQ=60)

                                                                        GGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGC                     >  SRR4302537.4256298/1‑94 (MQ=60)

                                                                        GGATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGC                     >  SRR4302537.4705790/1‑94 (MQ=60)

                                                                         GATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCA                    <  SRR4302537.5091700/94‑1 (MQ=60)

                                                                          ATAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAA                   >  SRR4302537.4927650/1‑94 (MQ=60)

                                                                           TAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAG                  <  SRR4302537.5933240/94‑1 (MQ=60)

                                                                           TAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAG                  <  SRR4302537.2896764/94‑1 (MQ=60)

                                                                           TAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAG                  <  SRR4302537.1592010/94‑1 (MQ=60)

                                                                           TAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAG                  <  SRR4302537.2663000/94‑1 (MQ=60)

                                                                           TAATCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAG                  >  SRR4302537.646429/1‑94 (MQ=60)

                                                                              TCCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCC               <  SRR4302537.4693276/94‑1 (MQ=60)

                                                                               CCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCC              <  SRR4302537.1122274/94‑1 (MQ=60)

                                                                               CCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCC              <  SRR4302537.1544296/94‑1 (MQ=60)

                                                                               CCAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCC              >  SRR4302537.3976109/1‑94 (MQ=60)

                                                                                CAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCA             >  SRR4302537.5065853/1‑94 (MQ=60)

                                                                                CAGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCA             <  SRR4302537.2513239/94‑1 (MQ=60)

                                                                                 AGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAG            >  SRR4302537.187327/1‑94 (MQ=60)

                                                                                 AGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAG            <  SRR4302537.6143931/94‑1 (MQ=60)

                                                                                 AGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAG            >  SRR4302537.4572877/1‑94 (MQ=60)

                                                                                 AGCAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCAGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAG            <  SRR4302537.3721191/94‑1 (MQ=60)

                                                                                   CAGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGAC          <  SRR4302537.2724667/94‑1 (MQ=60)

                                                                                    AGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACT         <  SRR4302537.683174/94‑1 (MQ=60)

                                                                                    AGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACT         <  SRR4302537.3164412/94‑1 (MQ=60)

                                                                                    AGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACT         >  SRR4302537.2967219/1‑94 (MQ=60)

                                                                                    AGGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACT         >  SRR4302537.442662/1‑94 (MQ=60)

                                                                                     GGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTG        >  SRR4302537.5789167/1‑94 (MQ=60)

                                                                                     GGTAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGCGGCAAGGGCCAGACTG        >  SRR4302537.5505049/1‑94 (MQ=60)

                                                                                       TAATGCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGT      >  SRR4302537.5949861/1‑94 (MQ=60)

                                                                                           GCTGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTACCC  >  SRR4302537.677843/1‑94 (MQ=60)

TCAGGTAACTACGCACGTCACTGGCGATACGTACCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTACCC  >  NC_000913/41136‑41320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`