Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	406,582	T→C	intergenic (+188/‑70)	yaiA → / → aroM	hypothetical protein/aroM

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	406,582	0	T	C	100.0%	890.6 / NA	251	intergenic (+188/‑70)	yaiA/aroM	hypothetical protein/aroM
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (162/89); total (162/89)

Only 100 of 263 total aligned reads displayed.

ACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGTAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGA  >  NC_000913/406492‑406670

acaataacaatCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACaagcaa                                                                                        >  1:1532576/1‑93 (MQ=255)

   ataacaatCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAgtg                                                                                     >  2:1292573/1‑93 (MQ=255)

    taacaatCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAgtgt                                                                                    >  2:2905949/1‑93 (MQ=255)

    taacaatCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAgtgt                                                                                    >  1:6234574/1‑93 (MQ=255)

    taacaatCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAgtgt                                                                                    >  2:4447473/1‑93 (MQ=255)

     aacaatCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTc                                                                                   >  1:4464678/1‑93 (MQ=255)

        aatCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTcagc                                                                                >  1:2420494/1‑93 (MQ=255)

         atCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTcagca                                                                               >  2:4041120/1‑93 (MQ=255)

         atCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTcagca                                                                               <  1:535186/93‑1 (MQ=255)

          tCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTcagcag                                                                              <  1:6477494/93‑1 (MQ=255)

          tCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTcagcag                                                                              >  1:315479/1‑93 (MQ=255)

          tCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGGCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTcagcag                                                                              >  1:1040714/1‑93 (MQ=255)

           ccATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgt                                                                             <  1:2638908/93‑1 (MQ=255)

            cATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgtg                                                                            >  1:3711529/1‑93 (MQ=255)

            cATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgtg                                                                            >  2:3986586/1‑93 (MQ=255)

            cATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgtg                                                                            <  1:3522574/93‑1 (MQ=255)

            cATTACTGGAATCATTTGGAATCTTTACATTATGCCATGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgtg                                                                            <  1:3661384/93‑1 (MQ=255)

              ttACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgtggt                                                                          <  2:4331481/93‑1 (MQ=255)

              ttACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgtggt                                                                          <  2:5422999/93‑1 (MQ=255)

              ttACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgtggt                                                                          <  1:1700236/93‑1 (MQ=255)

              ttACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgtggt                                                                          >  2:5823793/1‑93 (MQ=255)

               tACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAgtggtg                                                                         >  1:1811593/1‑93 (MQ=255)

                 cTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCt                                                                       >  2:3528371/1‑93 (MQ=255)

                  tGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCtt                                                                      >  1:5983673/1‑93 (MQ=255)

                    gAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTca                                                                    >  2:2145684/1‑93 (MQ=255)

                     aaTCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTcac                                                                   <  1:304329/93‑1 (MQ=255)

                      aTCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTcaca                                                                  <  2:1101204/93‑1 (MQ=255)

                      aTCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTcaca                                                                  >  2:2227927/1‑93 (MQ=255)

                       tCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCacac                                                                 >  1:1343084/1‑93 (MQ=255)

                        cATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACt                                                                <  2:1874816/93‑1 (MQ=255)

                        cATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACt                                                                >  1:5426254/1‑93 (MQ=255)

                         aTTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACtt                                                               >  2:3850079/1‑93 (MQ=255)

                          tttGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTg                                                              >  2:2554423/1‑93 (MQ=255)

                          tttGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTg                                                              >  2:1736230/1‑93 (MQ=255)

                          tttGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTg                                                              >  1:3194712/1‑93 (MQ=255)

                           ttGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGc                                                             >  1:5562787/1‑93 (MQ=255)

                            tGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGcc                                                            <  1:1089973/93‑1 (MQ=255)

                             ggAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGccc                                                           <  1:4966006/93‑1 (MQ=255)

                             ggAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGccc                                                           <  2:5042436/93‑1 (MQ=255)

                               aaTCTTTACATTATGCCGTGCACGTCTGCTGC‑ACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCCGt                                                        >  1:5649244/1‑93 (MQ=255)

                                aTCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGt                                                        >  1:2027964/1‑93 (MQ=255)

                                aTCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGt                                                        <  1:1019069/93‑1 (MQ=255)

                                aTCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGt                                                        <  1:382790/93‑1 (MQ=255)

                                 tCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTa                                                       <  2:5288804/93‑1 (MQ=255)

                                 tCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTa                                                       <  1:3936353/93‑1 (MQ=255)

                                  cTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTaa                                                      >  1:76837/1‑93 (MQ=255)

                                   tttACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAAt                                                     <  2:4936333/93‑1 (MQ=255)

                                   tttACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAAt                                                     <  2:709766/93‑1 (MQ=255)

                                    ttACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAAtt                                                    <  1:998968/93‑1 (MQ=255)

                                      aCATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTaa                                                  >  2:2084785/1‑93 (MQ=255)

                                      aCATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTaa                                                  >  2:668475/1‑93 (MQ=255)

                                      aCATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTaa                                                  <  1:5094399/93‑1 (MQ=255)

                                         ttATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAacga                                               >  2:56289/1‑93 (MQ=255)

                                         ttATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAacga                                               >  2:2763437/1‑93 (MQ=255)

                                          tATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAacgac                                              <  2:3089920/93‑1 (MQ=255)

                                            tGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAAcgacga                                            >  1:4136399/1‑93 (MQ=255)

                                            tGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAAcgacga                                            >  1:280165/1‑93 (MQ=255)

                                              ccGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACgaaa                                          >  2:4815053/1‑93 (MQ=255)

                                                gTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACgaaaga                                        >  2:2653114/1‑93 (MQ=255)

                                                 tGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACgaaagaa                                       >  2:294641/1‑93 (MQ=255)

                                                    aCGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAg                                    >  1:4841695/1‑93 (MQ=255)

                                                    aCGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAg                                    <  1:3892254/93‑1 (MQ=255)

                                                     cGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAga                                   >  2:5140064/1‑92 (MQ=255)

                                                     cGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGt                                   <  1:5834319/93‑1 (MQ=255)

                                                     cGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGt                                   >  2:588447/1‑93 (MQ=255)

                                                      gTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTa                                  >  2:1257884/1‑93 (MQ=255)

                                                      gTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTa                                  <  2:3150116/93‑1 (MQ=255)

                                                       tCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTaa                                 >  1:6448096/1‑93 (MQ=255)

                                                         tgctgcTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGACAGAAAAGTAAgg                               <  1:3488535/93‑1 (MQ=255)

                                                         tgctgcTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAgg                               <  2:2238338/93‑1 (MQ=255)

                                                         tgctgcTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAgg                               >  2:5563294/1‑93 (MQ=255)

                                                         tgctgcTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAgg                               >  2:3672336/1‑93 (MQ=255)

                                                         tgctgcTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAgg                               >  1:3696349/1‑93 (MQ=255)

                                                          gctgctACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAggg                              >  1:5759169/1‑92 (MQ=255)

                                                            tgctACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTgg                            >  1:4585259/1‑93 (MQ=255)

                                                             gctACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGa                           <  1:5870899/93‑1 (MQ=255)

                                                             gctACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGa                           >  1:4603176/1‑93 (MQ=255)

                                                             gctACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGa                           <  1:6317704/93‑1 (MQ=255)

                                                               tACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGAAAGGTGGATg                         >  1:2048045/1‑93 (MQ=255)

                                                                   cTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACa                     >  2:4733545/1‑93 (MQ=255)

                                                                     ttttGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGACAAGCAAGGTGGATGAACAAt                   >  2:6160175/1‑93 (MQ=255)

                                                                      tttGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATg                  >  2:1450620/1‑93 (MQ=255)

                                                                       ttGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGa                 <  2:4158423/93‑1 (MQ=255)

                                                                         gTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTTAGGTGGATGAACAATGAGt               <  2:6320384/93‑1 (MQ=255)

                                                                         gTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGt               <  2:4132471/93‑1 (MQ=255)

                                                                         gTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGt               >  2:3590192/1‑93 (MQ=255)

                                                                          tCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTg              <  1:4971904/93‑1 (MQ=255)

                                                                           cATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGc             <  2:6200278/93‑1 (MQ=255)

                                                                            aTTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGcg            >  1:4353877/1‑93 (MQ=255)

                                                                             tttGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGcgt           >  2:4403128/1‑93 (MQ=255)

                                                                              ttGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGcgtc          >  2:6088160/1‑93 (MQ=255)

                                                                               tGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGcgtcg         <  2:77121/93‑1 (MQ=255)

                                                                               tGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGcgtcg         >  1:1172658/1‑93 (MQ=255)

                                                                               tGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGcgtcg         >  1:287193/1‑93 (MQ=255)

                                                                               tGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGcgtcg         <  2:1532576/93‑1 (MQ=255)

                                                                                  aGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTg      <  2:3248178/93‑1 (MQ=255)

                                                                                    cacaAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGc    <  2:5959177/93‑1 (MQ=255)

                                                                                     acaAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCg   <  2:4532133/93‑1 (MQ=255)

                                                                                     acaAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCg   >  2:3341529/1‑93 (MQ=255)

                                                                                      caagcaagTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGa  <  1:2514440/93‑1 (MQ=255)

ACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGTAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGA  >  NC_000913/406492‑406670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TAAACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGTAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGATCCT  >  NC_000913/406489‑406674

TAAACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTTTAGCACAAGC                                                                                              >  SRR4302537.290080/1‑94 (MQ=60)

TAAACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGC                                                                                              <  SRR4302537.3564378/94‑1 (MQ=60)

TAAACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGC                                                                                              >  SRR4302537.1236465/1‑94 (MQ=60)

TAAACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGC                                                                                              <  SRR4302537.1232445/94‑1 (MQ=60)

 AAACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGGCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCA                                                                                             >  SRR4302537.5538293/1‑94 (MQ=60)

 AAACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCA                                                                                             >  SRR4302537.3577746/1‑94 (MQ=60)

 AAACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCA                                                                                             <  SRR4302537.5244161/94‑1 (MQ=60)

  AACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAA                                                                                            >  SRR4302537.1543286/1‑94 (MQ=60)

    CAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGT                                                                                          >  SRR4302537.4890965/1‑94 (MQ=60)

    CAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGT                                                                                          >  SRR4302537.2576896/1‑94 (MQ=60)

    CAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGT                                                                                          <  SRR4302537.3351391/94‑1 (MQ=60)

      ATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGT                                                                                        >  SRR4302537.6277455/1‑94 (MQ=60)

      ATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGT                                                                                        >  SRR4302537.6363629/1‑94 (MQ=60)

       TAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTC                                                                                       >  SRR4302537.4515176/1‑94 (MQ=60)

       TAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTC                                                                                       >  SRR4302537.4495555/1‑94 (MQ=60)

        AACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCA                                                                                      <  SRR4302537.355185/94‑1 (MQ=60)

        AACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTGTGTCATTTGTAGCACAAGCACGTGTCA                                                                                      >  SRR4302537.54802/1‑94 (MQ=60)

         ACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAG                                                                                     >  SRR4302537.4488792/1‑94 (MQ=60)

          CAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGC                                                                                    >  SRR4302537.2437551/1‑94 (MQ=60)

           AATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCA                                                                                   >  SRR4302537.5327766/1‑94 (MQ=60)

            ATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAG                                                                                  >  SRR4302537.317669/1‑94 (MQ=60)

            ATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAG                                                                                  >  SRR4302537.261804/1‑94 (MQ=60)

            ATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAG                                                                                  <  SRR4302537.538857/94‑1 (MQ=60)

            ATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGGCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAG                                                                                  >  SRR4302537.1047903/1‑94 (MQ=60)

             TCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGT                                                                                 <  SRR4302537.6521493/94‑1 (MQ=60)

             TCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGT                                                                                 >  SRR4302537.4796290/1‑94 (MQ=60)

              CCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTG                                                                                <  SRR4302537.2657370/94‑1 (MQ=60)

              CCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTG                                                                                >  SRR4302537.3737616/1‑94 (MQ=60)

               CATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGG                                                                               <  SRR4302537.3547492/94‑1 (MQ=60)

               CATTACTGGAATCATTTGGAATCTTTACATTATGCCATGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGG                                                                               <  SRR4302537.3687154/94‑1 (MQ=60)

                 TTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTG                                                                             <  SRR4302537.4755358/94‑1 (MQ=60)

                 TTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTG                                                                             >  SRR4302537.1824221/1‑94 (MQ=60)

                 TTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTG                                                                             <  SRR4302537.1712124/94‑1 (MQ=60)

                    CTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTT                                                                          >  SRR4302537.2052142/1‑94 (MQ=60)

                    CTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTT                                                                          >  SRR4302537.6024742/1‑94 (MQ=60)

                        AATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACA                                                                      <  SRR4302537.306444/94‑1 (MQ=60)

                         ATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACAC                                                                     <  SRR4302537.3707735/94‑1 (MQ=60)

                         ATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACAC                                                                     >  SRR4302537.1352438/1‑94 (MQ=60)

                         ATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACAC                                                                     >  SRR4302537.7615/1‑94 (MQ=60)

                          TCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACT                                                                    >  SRR4302537.5463246/1‑94 (MQ=60)

                            ATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTG                                                                  <  SRR4302537.4587277/94‑1 (MQ=60)

                            ATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTG                                                                  >  SRR4302537.3217175/1‑94 (MQ=60)

                            ATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTG                                                                  >  SRR4302537.3190958/1‑94 (MQ=60)

                            ATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTG                                                                  >  SRR4302537.1572394/1‑94 (MQ=60)

                             TTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGC                                                                 >  SRR4302537.5600803/1‑94 (MQ=60)

                               TGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCC                                                               >  SRR4302537.6298460/1‑94 (MQ=60)

                               TGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCC                                                               <  SRR4302537.1097499/94‑1 (MQ=60)

                                GGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCG                                                              >  SRR4302537.3574645/1‑94 (MQ=60)

                                GGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCG                                                              <  SRR4302537.5000233/94‑1 (MQ=60)

                                GGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCG                                                              <  SRR4302537.3856755/94‑1 (MQ=60)

                                 GAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGG                                                             >  SRR4302537.5932926/1‑94 (MQ=60)

                                 GAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGG                                                             <  SRR4302537.887171/94‑1 (MQ=60)

                                 GAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGG                                                             >  SRR4302537.5012697/1‑94 (MQ=60)

                                 GAATCTTTACATTATGCCGTGCACGTCTGCTGC‑ACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCCGT                                                            >  SRR4302537.5687907/1‑94 (MQ=60)

                                  AATCTTTTCATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGT                                                            <  SRR4302537.5886847/94‑1 (MQ=60)

                                  AATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGT                                                            >  SRR4302537.6242631/1‑94 (MQ=60)

                                  AATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGT                                                            >  SRR4302537.5865657/1‑94 (MQ=60)

                                  AATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGT                                                            >  SRR4302537.5803331/1‑94 (MQ=60)

                                  AATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGT                                                            >  SRR4302537.2042103/1‑94 (MQ=60)

                                   ATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTA                                                           <  SRR4302537.385440/94‑1 (MQ=60)

                                   ATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTA                                                           <  SRR4302537.1026092/94‑1 (MQ=60)

                                    TCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAA                                                          >  SRR4302537.77400/1‑94 (MQ=60)

                                    TCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAA                                                          <  SRR4302537.3963865/94‑1 (MQ=60)

                                      TTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATT                                                        >  SRR4302537.5612656/1‑94 (MQ=60)

                                       TTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTA                                                       <  SRR4302537.1005864/94‑1 (MQ=60)

                                       TTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTA                                                       >  SRR4302537.2454954/1‑94 (MQ=60)

                                       TTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTA                                                       >  SRR4302537.2405987/1‑94 (MQ=60)

                                         ACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAAC                                                     >  SRR4302537.3473991/1‑94 (MQ=60)

                                         ACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAAC                                                     <  SRR4302537.5129481/94‑1 (MQ=60)

                                         ACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAAC                                                     >  SRR4302537.3774242/1‑94 (MQ=60)

                                         ACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAAC                                                     <  SRR4302537.1752780/94‑1 (MQ=60)

                                          CATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACG                                                    <  SRR4302537.1743440/94‑1 (MQ=60)

                                          CATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACG                                                    >  SRR4302537.2280101/1‑94 (MQ=60)

                                          CATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACG                                                    <  SRR4302537.1288840/94‑1 (MQ=60)

                                           ATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGA                                                   >  SRR4302537.1085641/1‑94 (MQ=60)

                                           ATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGA                                                   >  SRR4302537.2692313/1‑94 (MQ=60)

                                           ATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGA                                                   >  SRR4302537.6415353/1‑94 (MQ=60)

                                             TATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACG                                                 <  SRR4302537.5397899/94‑1 (MQ=60)

                                             TATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACG                                                 >  SRR4302537.2860907/1‑94 (MQ=60)

                                              ATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGA                                                >  SRR4302537.4165258/1‑94 (MQ=60)

                                              ATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGA                                                >  SRR4302537.282119/1‑94 (MQ=60)

                                                 CGGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAG                                             >  SRR4302537.6136554/1‑94 (MQ=60)

                                                 CCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAG                                             <  SRR4302537.1436094/94‑1 (MQ=60)

                                                  CGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGA                                            <  SRR4302537.1866009/94‑1 (MQ=60)

                                                  CGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGA                                            <  SRR4302537.2704674/94‑1 (MQ=60)

                                                  CGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGA                                            >  SRR4302537.1037769/1‑94 (MQ=60)

                                                   GTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAA                                           >  SRR4302537.3912651/1‑94 (MQ=60)

                                                    TGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAA                                          >  SRR4302537.3534360/1‑94 (MQ=60)

                                                    TGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAA                                          <  SRR4302537.4229871/94‑1 (MQ=60)

                                                      CACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAG                                        >  SRR4302537.4875114/1‑94 (MQ=60)

                                                      CACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAG                                        <  SRR4302537.1059186/94‑1 (MQ=60)

                                                       ACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGGCGAAAGAAAAGA                                       >  SRR4302537.764101/1‑94 (MQ=60)

                                                       ACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGT                                       <  SRR4302537.3919469/94‑1 (MQ=60)

                                                        CGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTA                                      >  SRR4302537.4623284/1‑94 (MQ=60)

                                                        CGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTA                                      <  SRR4302537.5874308/94‑1 (MQ=60)

                                                         GTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAA                                     >  SRR4302537.3136288/1‑94 (MQ=60)

                                                         GTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAA                                     >  SRR4302537.5061540/1‑94 (MQ=60)

                                                         GTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAA                                     >  SRR4302537.6491835/1‑94 (MQ=60)

                                                          TCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAG                                    <  SRR4302537.571302/94‑1 (MQ=60)

                                                           CTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGG                                   >  SRR4302537.3722359/1‑94 (MQ=60)

                                                            TGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGACAGAAAAGTAAGGT                                  <  SRR4302537.3513209/94‑1 (MQ=60)

                                                            TGCTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGG                                  >  SRR4302537.5798617/1‑94 (MQ=60)

                                                              CTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGG                                >  SRR4302537.907434/1‑94 (MQ=60)

                                                              CTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGG                                >  SRR4302537.4045893/1‑94 (MQ=60)

                                                              CTGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGG                                >  SRR4302537.4616974/1‑94 (MQ=60)

                                                               TGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGA                               >  SRR4302537.1526586/1‑94 (MQ=60)

                                                               TGCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGA                               >  SRR4302537.4635041/1‑94 (MQ=60)

                                                                GCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGAT                              <  SRR4302537.5911171/94‑1 (MQ=60)

                                                                GCTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGAT                              <  SRR4302537.6360938/94‑1 (MQ=60)

                                                                 CTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATG                             >  SRR4302537.5689961/1‑94 (MQ=60)

                                                                 CTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATG                             <  SRR4302537.2980334/94‑1 (MQ=60)

                                                                 CTACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGAAAGGTGGATG                             >  SRR4302537.2062406/1‑94 (MQ=60)

                                                                  TACGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGA                            <  SRR4302537.5202061/94‑1 (MQ=60)

                                                                    CGCTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAAC                          >  SRR4302537.2910288/1‑94 (MQ=60)

                                                                      CTTTTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAA                        >  SRR4302537.3699055/1‑94 (MQ=60)

                                                                         TTTGTCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGA                     <  SRR4302537.1182571/94‑1 (MQ=60)

                                                                             TCATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGC                 <  SRR4302537.5006173/94‑1 (MQ=60)

                                                                             TCATTTGTAGCACAAGCAAGTATCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGC                 >  SRR4302537.1160934/1‑94 (MQ=60)

                                                                              CATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCG                >  SRR4302537.4384026/1‑94 (MQ=60)

                                                                              CATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGCGCG                >  SRR4302537.1930249/1‑94 (MQ=60)

                                                                              CATTTGTAGCACAAACAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCG                <  SRR4302537.3930344/94‑1 (MQ=60)

                                                                               ATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGT               >  SRR4302537.5549496/1‑94 (MQ=60)

                                                                               ATTTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGT               >  SRR4302537.3133919/1‑94 (MQ=60)

                                                                                 TTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCG             >  SRR4302537.289192/1‑94 (MQ=60)

                                                                                 TTGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCG             >  SRR4302537.1180818/1‑94 (MQ=60)

                                                                                  TGTAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGT            <  SRR4302537.4989466/94‑1 (MQ=60)

                                                                                    TAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTG          <  SRR4302537.5975027/94‑1 (MQ=60)

                                                                                    TAGCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTG          <  SRR4302537.3736334/94‑1 (MQ=60)

                                                                                      GCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGC        <  SRR4302537.5003284/94‑1 (MQ=60)

                                                                                      GCACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGC        <  SRR4302537.4004321/94‑1 (MQ=60)

                                                                                        ACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGA      >  SRR4302537.4223136/1‑94 (MQ=60)

                                                                                        ACAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGA      >  SRR4302537.3798634/1‑94 (MQ=60)

                                                                                         CAAGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGAT     <  SRR4302537.2532113/94‑1 (MQ=60)

                                                                                           AGCAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGATCC   >  SRR4302537.5804632/1‑94 (MQ=60)

                                                                                            GCAAGTGTCAGCAGTGGTGCTTCACACTGGCCGGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGATCCT  <  SRR4302537.3436420/94‑1 (MQ=60)

TAAACAATAACAATCCATTACTGGAATCATTTGGAATCTTTACATTATGCCGTGCACGTCTGCTGCTACGCTTTTTGTCATTTGTAGCACAAGTAAGTGTCAGCAGTGGTGCTTCACACTTGCCCGGTAATTAACGACGAAAGAAAAGTAAGGTGGATGAACAATGAGTGCGTCGTTGGCGATCCT  >  NC_000913/406489‑406674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`