Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	431,523	T→C	intergenic (‑286/+13)	tsx ← / ← yajI	Tsx/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	431,523	0	T	C	100.0%	889.4 / NA	256	intergenic (‑286/+13)	tsx/yajI	Tsx/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (125/131); total (125/131)

Only 100 of 268 total aligned reads displayed.

CCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGTCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAACG  >  NC_000913/431434‑431612

cccTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGcccc                                                                                        <  2:5833064/93‑1 (MQ=255)

cccTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGcccc                                                                                        >  1:6231454/1‑93 (MQ=255)

 ccTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGcccca                                                                                       >  1:6453997/1‑92 (MQ=255)

  cTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGa                                                                                      >  1:2749852/1‑93 (MQ=255)

  cTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGa                                                                                      >  2:2615042/1‑93 (MQ=255)

  cTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGa                                                                                      >  1:5104834/1‑93 (MQ=255)

  cTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGa                                                                                      >  2:4315745/1‑93 (MQ=255)

   ttgttgCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGaa                                                                                     >  1:3617939/1‑93 (MQ=255)

   ttgttgCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGaa                                                                                     >  1:4214340/1‑93 (MQ=255)

   ttgttgCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGaa                                                                                     >  1:4381779/1‑93 (MQ=255)

     gttgCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAAt                                                                                   >  2:5540511/1‑93 (MQ=255)

      ttgCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATa                                                                                  >  2:5886264/1‑93 (MQ=255)

       tgCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGGACAAAATCGCCCCGAAATAc                                                                                 <  2:6223436/93‑1 (MQ=255)

        gCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACg                                                                                >  2:4104683/1‑93 (MQ=255)

         cAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGt                                                                               <  1:2214691/93‑1 (MQ=255)

           aaCTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGttt                                                                             <  1:1303455/93‑1 (MQ=255)

           aaCTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGttt                                                                             >  2:2782040/1‑93 (MQ=255)

           aaCTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGttt                                                                             <  2:2820814/93‑1 (MQ=255)

            aCTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTa                                                                            >  2:2545879/1‑93 (MQ=255)

             cTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTAc                                                                           >  2:5116772/1‑93 (MQ=255)

              ttttACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACt                                                                          <  2:6473750/93‑1 (MQ=255)

              ttttACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACt                                                                          >  2:1745549/1‑93 (MQ=255)

               tttACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTg                                                                         >  2:1066847/1‑93 (MQ=255)

                 tACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCa                                                                       >  2:5195942/1‑93 (MQ=255)

                  aCTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCAt                                                                      <  1:4810651/93‑1 (MQ=255)

                   cTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATa                                                                     <  1:1737474/93‑1 (MQ=255)

                   cTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATa                                                                     <  1:5474935/93‑1 (MQ=255)

                    tATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGGCCCGAAATACGTTTACTGCATaa                                                                    >  2:1172705/1‑93 (MQ=255)

                    tATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATaa                                                                    >  2:3805893/1‑93 (MQ=255)

                      tCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACa                                                                  <  2:6095446/93‑1 (MQ=255)

                         aTCCAGGAGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACTCACAAAATCGCCCCGAAATACGTGTACTGCATAACAGGt                                                               >  2:4597080/1‑93 (MQ=255)

                            cAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGa                                                            >  1:3082320/1‑93 (MQ=255)

                             aGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGaa                                                           >  2:3657668/1‑93 (MQ=255)

                             aGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGaa                                                           >  1:1043622/1‑93 (MQ=255)

                              ggTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAAt                                                          >  2:4875348/1‑93 (MQ=255)

                              ggTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAAt                                                          >  2:4933000/1‑93 (MQ=255)

                               gTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATg                                                         >  1:182477/1‑93 (MQ=255)

                               gTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATg                                                         <  2:4651114/93‑1 (MQ=255)

                                tGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGt                                                        <  2:3278528/93‑1 (MQ=255)

                                tGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGt                                                        <  1:6261597/93‑1 (MQ=255)

                                 gATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTc                                                       <  2:5722045/93‑1 (MQ=255)

                                  aTGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCg                                                      <  2:940822/93‑1 (MQ=255)

                                  aTGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCg                                                      <  2:4385055/93‑1 (MQ=255)

                                    gTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTg                                                    <  1:4794017/93‑1 (MQ=255)

                                    gTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTg                                                    >  1:6101467/1‑93 (MQ=255)

                                     tAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTgg                                                   <  1:1267758/93‑1 (MQ=255)

                                     tAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTgg                                                   >  2:2377685/1‑93 (MQ=255)

                                      aaGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGa                                                  <  2:3455369/93‑1 (MQ=255)

                                      aaGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGa                                                  <  1:5806557/93‑1 (MQ=255)

                                      aaGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGa                                                  <  1:3794846/93‑1 (MQ=255)

                                        gCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATa                                                >  2:848291/1‑93 (MQ=255)

                                        gCAGAGTAACAAAATGACGGGGAAAGATGTTGCCGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGCTa                                                >  2:1089156/1‑93 (MQ=255)

                                          agagTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACg                                              >  2:4891808/1‑93 (MQ=255)

                                           gagTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGt                                             >  1:5880609/1‑93 (MQ=255)

                                            agTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTa                                            <  1:675870/93‑1 (MQ=255)

                                             gTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTAc                                           >  1:2286829/1‑93 (MQ=255)

                                               aaCAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACaa                                         <  2:5586703/93‑1 (MQ=255)

                                                aCAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACaaa                                        <  1:1437107/93‑1 (MQ=255)

                                                  aaaaTGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGc                                      <  1:3586388/93‑1 (MQ=255)

                                                  aaaaTGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGc                                      >  2:387310/1‑93 (MQ=255)

                                                   aaaTGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGcc                                     <  1:1180343/93‑1 (MQ=255)

                                                    aaTGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCt                                    <  1:772053/93‑1 (MQ=255)

                                                     aTGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTa                                   <  1:6344135/93‑1 (MQ=255)

                                                     aTGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTa                                   <  2:6239098/93‑1 (MQ=255)

                                                      tGACGGGGAAAGATGTTGCGGGACGCACAAAGTCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTat                                  <  2:5968014/93‑2 (MQ=255)

                                                      tGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTaa                                  >  2:4633667/1‑93 (MQ=255)

                                                      tGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTaa                                  >  1:5947604/1‑93 (MQ=255)

                                                        aCGGGGAAAGATTCTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACt                                <  1:4945117/93‑1 (MQ=255)

                                                        aCGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACt                                >  2:3033127/1‑93 (MQ=255)

                                                        aCGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGACTAACt                                >  1:2452598/1‑93 (MQ=255)

                                                          ggggAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGa                              <  2:5444538/93‑1 (MQ=255)

                                                          ggggAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATAAGTACAAAGCCTAACTGa                              >  2:5713849/1‑93 (MQ=255)

                                                              aaaGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCca                          >  1:2485980/1‑93 (MQ=255)

                                                               aaGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCcac                         >  1:5248235/1‑93 (MQ=255)

                                                                   tGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGaa                     >  2:735331/1‑93 (MQ=255)

                                                                   tGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGaa                     >  1:1957450/1‑93 (MQ=255)

                                                                   tGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATACACAGaa                     >  1:1102584/1‑93 (MQ=255)

                                                                    gTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGaaa                    >  2:1400053/1‑93 (MQ=255)

                                                                     ttGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAAt                   >  1:2108222/1‑93 (MQ=255)

                                                                     ttGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAAt                   >  2:3509359/1‑93 (MQ=255)

                                                                      tGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATc                  >  2:212208/1‑93 (MQ=255)

                                                                       gCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATcc                 >  2:407387/1‑93 (MQ=255)

                                                                        cGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATccc                <  1:5579057/93‑1 (MQ=255)

                                                                         gggACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATcccc               >  2:4574704/1‑93 (MQ=255)

                                                                          ggACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCt              <  1:2665860/93‑1 (MQ=255)

                                                                          ggACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCt              <  1:3034103/93‑1 (MQ=255)

                                                                           gACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCtt             >  1:3391754/1‑93 (MQ=255)

                                                                            aCGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCttt            <  1:2744024/93‑1 (MQ=255)

                                                                             cGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCGCCTTTa           <  2:1579789/93‑1 (MQ=255)

                                                                              gCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTaa          <  2:1764553/93‑1 (MQ=255)

                                                                               cacaAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAAc         <  1:4519625/93‑1 (MQ=255)

                                                                                acaAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACt        <  1:3986759/93‑1 (MQ=255)

                                                                                  aaaaTCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTga      >  2:1438798/1‑92 (MQ=255)

                                                                                  aaaaTCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGt      <  1:993361/93‑1 (MQ=255)

                                                                                  aaaaTCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGt      >  2:2883221/1‑93 (MQ=255)

                                                                                    aaTCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTaa    <  1:5383761/93‑1 (MQ=255)

                                                                                    aaTCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTaa    <  2:723670/93‑1 (MQ=255)

                                                                                    aaTCGCCCCCAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTaa    <  2:6032767/93‑1 (MQ=255)

                                                                                     aTCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAAc   >  2:3108319/1‑93 (MQ=255)

                                                                                      tCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTAATCCACAGAAATCCCCTTTAACTGTAACg  >  1:2920019/1‑93 (MQ=255)

CCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGTCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAACG  >  NC_000913/431434‑431612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGTCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAACGGAAT  >  NC_000913/431432‑431616

CGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCC                                                                                             <  SRR4302537.5335110/94‑1 (MQ=60)

 GCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCC                                                                                            >  SRR4302537.6170468/1‑94 (MQ=60)

 GCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCC                                                                                            >  SRR4302537.6274318/1‑94 (MQ=60)

   CCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGA                                                                                          >  SRR4302537.5140016/1‑94 (MQ=60)

   CCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGA                                                                                          >  SRR4302537.2769039/1‑94 (MQ=60)

    CTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAA                                                                                         >  SRR4302537.4243727/1‑94 (MQ=60)

    CTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAA                                                                                         >  SRR4302537.4412020/1‑94 (MQ=60)

    CTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAA                                                                                         >  SRR4302537.3643444/1‑94 (MQ=60)

      TGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAAT                                                                                       <  SRR4302537.4051869/94‑1 (MQ=60)

         TGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACG                                                                                    >  SRR4302537.6022250/1‑94 (MQ=60)

           CAAACTTTTACTATCAATCGAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTT                                                                                  <  SRR4302537.2075141/94‑1 (MQ=60)

           CAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTT                                                                                  <  SRR4302537.2230311/94‑1 (MQ=60)

           CAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTT                                                                                  <  SRR4302537.5520616/94‑1 (MQ=60)

             AACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTA                                                                                <  SRR4302537.1312516/94‑1 (MQ=60)

             AACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTA                                                                                >  SRR4302537.2266193/1‑94 (MQ=60)

              ACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTAC                                                                               >  SRR4302537.1124356/1‑94 (MQ=60)

               CTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACT                                                                              <  SRR4302537.5951516/94‑1 (MQ=60)

               CTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACT                                                                              <  SRR4302537.658735/94‑1 (MQ=60)

               CTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACT                                                                              >  SRR4302537.6361953/1‑94 (MQ=60)

                TTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTG                                                                             <  SRR4302537.248626/94‑1 (MQ=60)

                TTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTG                                                                             >  SRR4302537.4820586/1‑94 (MQ=60)

                    ACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATA                                                                         <  SRR4302537.4843857/94‑1 (MQ=60)

                     CTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAA                                                                        <  SRR4302537.2765035/94‑1 (MQ=60)

                     CTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAA                                                                        >  SRR4302537.254120/1‑94 (MQ=60)

                     CTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAA                                                                        <  SRR4302537.1749592/94‑1 (MQ=60)

                     CTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAA                                                                        <  SRR4302537.5512299/94‑1 (MQ=60)

                      TATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAAC                                                                       <  SRR4302537.3634344/94‑1 (MQ=60)

                        TCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAG                                                                     >  SRR4302537.6153524/1‑94 (MQ=60)

                        TCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAG                                                                     >  SRR4302537.2898808/1‑94 (MQ=60)

                          AATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGT                                                                   <  SRR4302537.5057103/94‑1 (MQ=60)

                          AATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGT                                                                   <  SRR4302537.5457603/94‑1 (MQ=60)

                             CCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGA                                                                >  SRR4302537.3103787/1‑94 (MQ=60)

                              CAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAA                                                               <  SRR4302537.38820/94‑1 (MQ=60)

                              CAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAA                                                               >  SRR4302537.1050825/1‑94 (MQ=60)

                              CAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAA                                                               >  SRR4302537.5700854/1‑94 (MQ=60)

                              CAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAA                                                               >  SRR4302537.1316085/1‑94 (MQ=60)

                              CAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAA                                                               <  SRR4302537.764758/94‑1 (MQ=60)

                               AGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAAT                                                              >  SRR4302537.724441/1‑94 (MQ=60)

                               AGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAAT                                                              >  SRR4302537.6070350/1‑94 (MQ=60)

                                GGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATG                                                             >  SRR4302537.183772/1‑94 (MQ=60)

                                GGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATG                                                             >  SRR4302537.3458862/1‑94 (MQ=60)

                                GGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATG                                                             <  SRR4302537.5507988/94‑1 (MQ=60)

                                  TGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTC                                                           <  SRR4302537.6304584/94‑1 (MQ=60)

                                     TGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTG                                                        >  SRR4302537.6143390/1‑94 (MQ=60)

                                      GTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGG                                                       >  SRR4302537.4265910/1‑94 (MQ=60)

                                      GTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGG                                                       <  SRR4302537.4827104/94‑1 (MQ=60)

                                       TAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGA                                                      <  SRR4302537.1276575/94‑1 (MQ=60)

                                       TAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGA                                                      >  SRR4302537.2268606/1‑94 (MQ=60)

                                        AAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGAT                                                     <  SRR4302537.2093712/94‑1 (MQ=60)

                                        AAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGAT                                                     <  SRR4302537.1630390/94‑1 (MQ=60)

                                        AAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGAT                                                     <  SRR4302537.3821478/94‑1 (MQ=60)

                                        AAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGAT                                                     <  SRR4302537.5846376/94‑1 (MQ=60)

                                        AAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGAT                                                     >  SRR4302537.1154903/1‑94 (MQ=60)

                                        AAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGAT                                                     >  SRR4302537.6406959/1‑94 (MQ=60)

                                          GCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATAC                                                   <  SRR4302537.2217957/94‑1 (MQ=60)

                                          GCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATAC                                                   <  SRR4302537.6363275/94‑1 (MQ=60)

                                           CAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACG                                                  <  SRR4302537.2992464/94‑1 (MQ=60)

                                            AGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGT                                                 >  SRR4302537.5920956/1‑94 (MQ=60)

                                              AGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTAC                                               >  SRR4302537.2302959/1‑94 (MQ=60)

                                              AGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTAC                                               <  SRR4302537.5318626/94‑1 (MQ=60)

                                              AGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTAC                                               >  SRR4302537.4122895/1‑94 (MQ=60)

                                              AGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTAC                                               <  SRR4302537.680500/94‑1 (MQ=60)

                                               GTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACA                                              <  SRR4302537.370988/94‑1 (MQ=60)

                                                 AACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAA                                            >  SRR4302537.4837769/1‑94 (MQ=60)

                                                  ACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAG                                           <  SRR4302537.1447100/94‑1 (MQ=60)

                                                   CAAAATGACGGGGGAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACACAGC                                          >  SRR4302537.5585393/1‑94 (MQ=60)

                                                   CAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGC                                          >  SRR4302537.3285/1‑94 (MQ=60)

                                                    AAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCC                                         <  SRR4302537.5868639/94‑1 (MQ=60)

                                                    AAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCC                                         <  SRR4302537.3806868/94‑1 (MQ=60)

                                                    AAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCC                                         <  SRR4302537.3611670/94‑1 (MQ=60)

                                                    AAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCC                                         >  SRR4302537.6391236/1‑94 (MQ=60)

                                                    AAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCC                                         <  SRR4302537.2356618/94‑1 (MQ=60)

                                                    AAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCC                                         >  SRR4302537.3028907/1‑94 (MQ=60)

                                                     AAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCT                                        <  SRR4302537.1188556/94‑1 (MQ=60)

                                                      AATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTA                                       >  SRR4302537.4526429/1‑94 (MQ=60)

                                                      AATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTA                                       <  SRR4302537.777344/94‑1 (MQ=60)

                                                       ATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAA                                      <  SRR4302537.6387473/94‑1 (MQ=60)

                                                       ATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAA                                      >  SRR4302537.5988427/1‑94 (MQ=60)

                                                        TGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAAC                                     >  SRR4302537.5265839/1‑94 (MQ=60)

                                                        TGACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAAC                                     <  SRR4302537.4854855/94‑1 (MQ=60)

                                                         GACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACT                                    <  SRR4302537.2536099/94‑1 (MQ=60)

                                                         GACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACT                                    <  SRR4302537.1076581/94‑1 (MQ=60)

                                                         GACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGACTAACT                                    >  SRR4302537.2469852/1‑94 (MQ=60)

                                                          ACGGGGAAAGATTCTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTG                                   <  SRR4302537.4979217/94‑1 (MQ=60)

                                                          ACGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTG                                   <  SRR4302537.1601016/94‑1 (MQ=60)

                                                           CGGGGAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGA                                  >  SRR4302537.1299440/1‑94 (MQ=60)

                                                               GAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCA                              >  SRR4302537.2503482/1‑94 (MQ=60)

                                                               GAAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCA                              <  SRR4302537.2762623/94‑1 (MQ=60)

                                                                AAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCAC                             >  SRR4302537.2852223/1‑94 (MQ=60)

                                                                AAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCAC                             >  SRR4302537.3497815/1‑94 (MQ=60)

                                                                AAAGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCAC                             >  SRR4302537.5284351/1‑94 (MQ=60)

                                                                  AGATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAG                           <  SRR4302537.1940924/94‑1 (MQ=60)

                                                                   GATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGA                          <  SRR4302537.2445349/94‑1 (MQ=60)

                                                                    ATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAA                         >  SRR4302537.1971069/1‑94 (MQ=60)

                                                                    ATGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATACACAGAA                         >  SRR4302537.1110202/1‑94 (MQ=60)

                                                                     TGTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAA                        <  SRR4302537.5312122/94‑1 (MQ=60)

                                                                      GTTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAAT                       >  SRR4302537.2123084/1‑94 (MQ=60)

                                                                       TTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATC                      <  SRR4302537.4693010/94‑1 (MQ=60)

                                                                       TTGCGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATC                      >  SRR4302537.3103583/1‑94 (MQ=60)

                                                                          CGGGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCC                   <  SRR4302537.5617189/94‑1 (MQ=60)

                                                                            GGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTT                 >  SRR4302537.3415778/1‑94 (MQ=60)

                                                                            GGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTT                 <  SRR4302537.2684482/94‑1 (MQ=60)

                                                                            GGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTT                 >  SRR4302537.5752719/1‑94 (MQ=60)

                                                                            GGACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTT                 <  SRR4302537.3055254/94‑1 (MQ=60)

                                                                             GACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTT                >  SRR4302537.5071219/1‑94 (MQ=60)

                                                                             GACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTT                <  SRR4302537.1795222/94‑1 (MQ=60)

                                                                              ACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTA               <  SRR4302537.3863864/94‑1 (MQ=60)

                                                                              ACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTA               >  SRR4302537.2709610/1‑94 (MQ=60)

                                                                              ACGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTA               <  SRR4302537.2763166/94‑1 (MQ=60)

                                                                               CGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAA              <  SRR4302537.4858597/94‑1 (MQ=60)

                                                                               CGCACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACGCATCCACAGAAATCCCCTCTAA              >  SRR4302537.1419439/1‑94 (MQ=60)

                                                                                cgcccAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAAC             <  SRR4302537.5149939/89‑1 (MQ=60)

                                                                                 CACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACT            >  SRR4302537.1201148/1‑94 (MQ=60)

                                                                                 CACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACT            <  SRR4302537.4550885/94‑1 (MQ=60)

                                                                                  ACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTG           <  SRR4302537.4014676/94‑1 (MQ=60)

                                                                                  ACAAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTG           <  SRR4302537.6281608/94‑1 (MQ=60)

                                                                                    AAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTA         <  SRR4302537.3392387/94‑1 (MQ=60)

                                                                                    AAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTA         <  SRR4302537.850231/94‑1 (MQ=60)

                                                                                    AAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTA         <  SRR4302537.1908637/94‑1 (MQ=60)

                                                                                    AAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTA         >  SRR4302537.5913553/1‑94 (MQ=60)

                                                                                    AAAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTA         <  SRR4302537.1000224/94‑1 (MQ=60)

                                                                                     AAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAA        >  SRR4302537.451244/1‑94 (MQ=60)

                                                                                     AAATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAA        >  SRR4302537.1261027/1‑94 (MQ=60)

                                                                                      AATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAAC       <  SRR4302537.804748/94‑1 (MQ=60)

                                                                                      AATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAAC       <  SRR4302537.5420569/94‑1 (MQ=60)

                                                                                       ATCGCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTAATCCACAGAAATCCCCTTTAACTGTAACG      >  SRR4302537.2940542/1‑94 (MQ=60)

                                                                                          GCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAACGGAA   <  SRR4302537.3872811/94‑1 (MQ=60)

                                                                                          GCCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAACGGAA   <  SRR4302537.2182822/94‑1 (MQ=60)

                                                                                           CCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAACGGAAT  <  SRR4302537.2615135/94‑1 (MQ=60)

                                                                                           CCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAACGGAAT  >  SRR4302537.4501223/1‑94 (MQ=60)

                                                                                           CCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAACGGAAT  <  SRR4302537.4853504/94‑1 (MQ=60)

CGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAAGATGTTGCGGGACGCACAAAATCGTCCCGAAATACGTTTACTGCATAACAGGTTGAATGTCGTGGATACGTACAAAGCCTAACTGATCCACAGAAATCCCCTTTAACTGTAACGGAAT  >  NC_000913/431432‑431616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`