Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	625,013	(C)_5→4	coding (906/1176 nt)	entC →	isochorismate hydroxymutase 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	625,009	0	C	.	99.1%	998.2 / ‑0.2	216	coding (902/1176 nt)	entC	isochorismate hydroxymutase 2
Reads supporting (aligned to +/- strand): ref base C (2/0); new base . (124/90); total (126/90)
Fisher's exact test for biased strand distribution p-value = 5.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.77e-01

Only 100 of 241 total aligned reads displayed.

CACGCCGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGACCCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTG  >  NC_000913/624917‑625098

cacGCCGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGAc                                                                                           >  1:4972425/1‑93 (MQ=255)

cacGCCGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGAc                                                                                           <  2:2624164/93‑1 (MQ=255)

 acGCCGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGAcc                                                                                          >  1:883535/1‑93 (MQ=255)

   gCCGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGAcccc                                                                                        >  2:3968925/1‑93 (MQ=255)

   gCCGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGAcccc                                                                                        >  2:3324945/1‑93 (MQ=255)

      gACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGAccccgcg                                                                                     >  1:467123/1‑90 (MQ=255)

       aCGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGAccccgcgc                                                                                    <  2:1125094/93‑5 (MQ=255)

        cGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCt                                                                                  >  1:3328442/1‑93 (MQ=255)

            ttgGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGc                                                                              <  1:5247484/92‑1 (MQ=255)

            gtgGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGc                                                                              <  2:1318646/93‑1 (MQ=255)

             tgGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCg                                                                             >  2:2267422/1‑93 (MQ=255)

             tgGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCg                                                                             >  2:2788941/1‑93 (MQ=255)

                cATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAACCGCACTGACTCTGGCCTGTCTGCTGCATCTGA‑CCCCGCGCTGAGCGGtt                                                                          <  2:6303879/93‑1 (MQ=255)

                 aTCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGttt                                                                         <  1:1454690/93‑1 (MQ=255)

                  tctcGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTc                                                                        <  2:2012323/93‑1 (MQ=255)

                  tctcGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTc                                                                        >  1:2494903/1‑93 (MQ=255)

                  tctcGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTc                                                                        >  1:2428126/1‑93 (MQ=255)

                   ctcGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTcc                                                                       >  1:6102654/1‑93 (MQ=255)

                   ctcGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTcc                                                                       <  1:5675175/93‑1 (MQ=255)

                    tcGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTTAGCGGTTTccc                                                                      <  2:4029044/93‑1 (MQ=255)

                    tcGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTccc                                                                      >  2:3207428/1‑93 (MQ=255)

                    tcGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTccc                                                                      <  1:3529310/93‑1 (MQ=255)

                      gCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGc                                                                    >  1:4270935/1‑93 (MQ=255)

                       cAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCa                                                                   <  2:5015969/93‑1 (MQ=255)

                        aaCTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCAt                                                                  <  2:6218821/93‑1 (MQ=255)

                         aCTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATc                                                                 <  2:1923942/93‑1 (MQ=255)

                         aCTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATc                                                                 <  2:354706/93‑1 (MQ=255)

                           tCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAg                                                               >  1:2555016/1‑93 (MQ=255)

                            cccTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAgg                                                              >  2:5851620/1‑93 (MQ=255)

                             ccTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGc                                                             >  2:4487539/1‑93 (MQ=255)

                              cTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGcc                                                            >  1:4128082/1‑93 (MQ=255)

                              cTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGcc                                                            >  2:1934891/1‑93 (MQ=255)

                               tttGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCcg                                                           >  1:3589364/1‑93 (MQ=255)

                               tttGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCcg                                                           >  1:5197399/1‑93 (MQ=255)

                                  gAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGa                                                        <  1:5826145/93‑1 (MQ=255)

                                     ggTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGAccc                                                     >  1:5940861/1‑93 (MQ=255)

                                     ggTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGAccc                                                     >  1:1154538/1‑93 (MQ=255)

                                     ggTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGAccc                                                     >  1:4023300/1‑93 (MQ=255)

                                     ggTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGAccc                                                     >  1:3624465/1‑93 (MQ=255)

                                      gTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCa                                                    >  1:2710168/1‑93 (MQ=255)

                                       tAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAg                                                   <  2:2748035/93‑1 (MQ=255)

                                        aaaGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAgg                                                  >  2:52618/1‑93 (MQ=255)

                                         aaGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGt                                                 >  2:4162216/1‑93 (MQ=255)

                                           gCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTa                                               >  2:1574459/1‑93 (MQ=255)

                                           gCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTa                                               >  2:4536415/1‑93 (MQ=255)

                                            ggAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTAt                                              <  2:5716902/92‑1 (MQ=255)

                                            cGAATTCGCAAGAAAACGCTCTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTAt                                              <  2:5589387/93‑1 (MQ=255)

                                            cGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTAt                                              >  2:4686441/1‑93 (MQ=255)

                                            cGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTAt                                              <  1:833545/93‑1 (MQ=255)

                                            cGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGATTCCCGCATCAGGCCGCGACCCAGGTTAt                                              >  1:2186667/1‑93 (MQ=255)

                                             gAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTAtt                                             >  1:1531357/1‑93 (MQ=255)

                                               aTTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGc                                           >  2:3728824/1‑93 (MQ=255)

                                                ttCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGATCGGGTTCCCGCATCAGGCCGCGACCCAGGTTATTGCt                                          >  2:4715099/1‑93 (MQ=255)

                                                ttCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCt                                          >  2:238477/1‑93 (MQ=255)

                                                     aaGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACt                                     <  2:4863919/93‑1 (MQ=255)

                                                     aaGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACt                                     >  1:946440/1‑93 (MQ=255)

                                                      aGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGACCCCC‑CGCTGAGCGGTTTCGCGCATCACGCCGCGACCCAGGTTATTGCTGAACTg                                    >  1:1756588/1‑93 (MQ=255)

                                                        aaaaCGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTTCTGCACTTGa                                  >  1:3513085/1‑93 (MQ=255)

                                                         aaaCGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGaa                                 <  1:4798386/93‑1 (MQ=255)

                                                          aaCGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAAc                                <  1:3148839/93‑1 (MQ=255)

                                                          aaCGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAAc                                >  1:666892/1‑93 (MQ=255)

                                                          aaCGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAAc                                >  1:3942776/1‑93 (MQ=255)

                                                           aCGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAAcc                               <  1:4568327/93‑1 (MQ=255)

                                                           aCGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAAcc                               >  1:263829/1‑93 (MQ=255)

                                                           aCGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGCTATTGCTGAACTGGAAcc                               >  1:1653729/1‑93 (MQ=255)

                                                           aCGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGCTTCCCGCATCAGGCCGCGAACCAGGTTATTGCTGAACTGGAAca                               >  2:6095542/1‑92 (MQ=255)

                                                             gCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGt                             >  2:3783455/1‑93 (MQ=255)

                                                              cACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGtt                            >  2:680772/1‑93 (MQ=255)

                                                              cACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGtt                            <  1:2135563/93‑1 (MQ=255)

                                                               aCTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTc                           <  2:1756442/93‑1 (MQ=255)

                                                               aCTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTc                           <  1:3660912/93‑1 (MQ=255)

                                                                cTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGGTATTGCTGAACTGGAACCGTTCg                          >  1:194528/1‑93 (MQ=255)

                                                                cTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGGTATTGCTGAACTGGAACCGTTCg                          >  2:4695855/1‑93 (MQ=255)

                                                                 tGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGa                         <  2:1848279/93‑1 (MQ=255)

                                                                  gACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGAc                        <  1:5147232/93‑1 (MQ=255)

                                                                   aCTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGAcc                       >  2:3865025/1‑93 (MQ=255)

                                                                   aCTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGAcc                       >  2:4128057/1‑93 (MQ=255)

                                                                   aCTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGAcc                       >  1:3354904/1‑93 (MQ=255)

                                                                   aCTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGATTCCCGCATCACGCCGAGACCCAGGATATTGCTGAACTGGAACCGTTCGAca                       >  2:2031345/1‑92 (MQ=255)

                                                                     tctGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACcgc                     >  2:4360961/1‑93 (MQ=255)

                                                                     tctGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACcgc                     >  1:1311712/1‑93 (MQ=255)

                                                                     tctGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACcgc                     >  2:1491737/1‑93 (MQ=255)

                                                                        ggCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGaa                  <  2:3135413/93‑1 (MQ=255)

                                                                        ggCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGaa                  <  2:5248115/93‑1 (MQ=255)

                                                                         gCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAAc                 >  1:2754217/1‑93 (MQ=255)

                                                                         gCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAAc                 <  2:506503/93‑1 (MQ=255)

                                                                           cTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCTGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTg               <  1:2851178/93‑1 (MQ=255)

                                                                           cTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTTGAACCGTTCGACCGCGAACTg               >  1:3487310/1‑93 (MQ=255)

                                                                            tGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGCACTGt              >  2:477210/1‑93 (MQ=255)

                                                                            tGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGt              >  2:2651063/1‑93 (MQ=255)

                                                                            tGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGt              >  1:2247528/1‑93 (MQ=255)

                                                                             gTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGtt             <  2:6283282/93‑1 (MQ=255)

                                                                              tCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGttt            >  1:6297343/1‑93 (MQ=255)

                                                                                tgctgcATCCGA‑CCCCGCGCTGCGCGGTTTCCCGCATCAGGTCGCGACCCAGGCTATTGCTGAACTGGAATTGTTCGTATGGGCACTGTTTga          >  2:3423843/1‑92 (MQ=255)

                                                                                 gctgcATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTggc         <  1:1053289/93‑1 (MQ=255)

                                                                                 gctgcATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTggc         >  2:6401518/1‑93 (MQ=255)

                                                                                  ctgcATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTggcg        <  1:1348944/93‑1 (MQ=255)

                                                                                   tgcATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTggcgg       >  2:2674131/1‑93 (MQ=255)

                                                                                     cATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCa     >  2:5317863/1‑93 (MQ=255)

                                                                                         ccgcccccGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATtg  <  1:5083170/90‑1 (MQ=255)

CACGCCGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGACCCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTG  >  NC_000913/624917‑625098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGACCCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGTGGGTTGG  >  NC_000913/624922‑625106

CGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCG                                                                                            >  SRR4302537.470334/1‑94 (MQ=60)

CGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCG                                                                                            >  SRR4302537.2756808/1‑94 (MQ=60)

  ACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCT                                                                                          >  SRR4302537.3351995/1‑94 (MQ=60)

   CGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTG                                                                                         >  SRR4302537.6268863/1‑94 (MQ=60)

    GCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGA                                                                                        >  SRR4302537.5278208/1‑94 (MQ=60)

       TTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCG                                                                                     <  SRR4302537.5283592/94‑1 (MQ=60)

       GTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCG                                                                                     <  SRR4302537.4832335/94‑1 (MQ=60)

         GGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGT                                                                                   <  SRR4302537.3607429/94‑1 (MQ=60)

           CATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTT                                                                                 >  SRR4302537.2844455/1‑94 (MQ=60)

           CATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTT                                                                                 <  SRR4302537.868106/94‑1 (MQ=60)

           CATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTT                                                                                 <  SRR4302537.1663462/94‑1 (MQ=60)

            ATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTC                                                                                >  SRR4302537.2445233/1‑94 (MQ=60)

            ATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTC                                                                                >  SRR4302537.2512469/1‑94 (MQ=60)

            ATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTC                                                                                <  SRR4302537.1464825/94‑1 (MQ=60)

             TCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCC                                                                               >  SRR4302537.6144585/1‑94 (MQ=60)

              CTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCC                                                                              >  SRR4302537.6009440/1‑94 (MQ=60)

              CTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCC                                                                              <  SRR4302537.5714006/94‑1 (MQ=60)

               TCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCG                                                                             <  SRR4302537.3554266/94‑1 (MQ=60)

               TCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCG                                                                             <  SRR4302537.2473557/94‑1 (MQ=60)

                CGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGC                                                                            >  SRR4302537.4300610/1‑94 (MQ=60)

                CGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGC                                                                            <  SRR4302537.3538295/94‑1 (MQ=60)

                   AACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATC                                                                         >  SRR4302537.906987/1‑94 (MQ=60)

                    ACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCA                                                                        <  SRR4302537.2657544/94‑1 (MQ=60)

                    ACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCA                                                                        >  SRR4302537.2546806/1‑94 (MQ=60)

                     CTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAG                                                                       >  SRR4302537.2572931/1‑94 (MQ=60)

                     CTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAG                                                                       <  SRR4302537.403548/94‑1 (MQ=60)

                      TCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGG                                                                      >  SRR4302537.6502928/1‑94 (MQ=60)

                       CCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGC                                                                     <  SRR4302537.536830/94‑1 (MQ=60)

                        CCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCC                                                                    >  SRR4302537.4156894/1‑94 (MQ=60)

                        CCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCC                                                                    <  SRR4302537.1344076/94‑1 (MQ=60)

                        CCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCC                                                                    <  SRR4302537.5880590/94‑1 (MQ=60)

                        CCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCC                                                                    <  SRR4302537.2450445/94‑1 (MQ=60)

                        CCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCC                                                                    >  SRR4302537.2317769/1‑94 (MQ=60)

                         CTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCG                                                                   >  SRR4302537.5233158/1‑94 (MQ=60)

                         CTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCG                                                                   >  SRR4302537.3614666/1‑94 (MQ=60)

                          TTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGC                                                                  >  SRR4302537.3855791/1‑94 (MQ=60)

                           TTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACCATGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGGCGCG                                                                 <  SRR4302537.4626674/94‑1 (MQ=60)

                             GAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGAC                                                               <  SRR4302537.5866076/94‑1 (MQ=60)

                              AAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGGATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACC                                                              >  SRR4302537.117675/1‑94 (MQ=60)

                              AAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACC                                                              >  SRR4302537.2199785/1‑94 (MQ=60)

                               AGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTGTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCG                                                             >  SRR4302537.1995044/1‑94 (MQ=60)

                               AGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCC                                                             >  SRR4302537.5981636/1‑94 (MQ=60)

                               AGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCC                                                             >  SRR4302537.4739346/1‑94 (MQ=60)

                               AGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCC                                                             >  SRR4302537.4051469/1‑94 (MQ=60)

                               AGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCC                                                             >  SRR4302537.1162573/1‑94 (MQ=60)

                               AGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCC                                                             >  SRR4302537.3650010/1‑94 (MQ=60)

                                GGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCA                                                            >  SRR4302537.2729094/1‑94 (MQ=60)

                                  TAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGG                                                          <  SRR4302537.351970/94‑1 (MQ=60)

                                   AAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGT                                                         <  SRR4302537.4680970/94‑1 (MQ=60)

                                     AGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTA                                                       >  SRR4302537.5219266/1‑94 (MQ=60)

                                     AGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTA                                                       >  SRR4302537.4148394/1‑94 (MQ=60)

                                      GCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTAT                                                      <  SRR4302537.842086/94‑1 (MQ=60)

                                      GCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGATTCCCGCATCAGGCCGCGACCCAGGTTAT                                                      >  SRR4302537.2202071/1‑94 (MQ=60)

                                       CGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATT                                                     >  SRR4302537.1542058/1‑94 (MQ=60)

                                       CGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATT                                                     <  SRR4302537.2234609/94‑1 (MQ=60)

                                       CGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATT                                                     <  SRR4302537.839250/94‑1 (MQ=60)

                                       CGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATT                                                     >  SRR4302537.1082493/1‑94 (MQ=60)

                                       CGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGGTTCCCGCATCAGGCCGCGACCCAGGTTATT                                                     >  SRR4302537.5106377/1‑94 (MQ=60)

                                        GAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTG                                                    >  SRR4302537.4843017/1‑94 (MQ=60)

                                         AATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGC                                                   >  SRR4302537.3371312/1‑94 (MQ=60)

                                          ATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCT                                                  >  SRR4302537.1429423/1‑94 (MQ=60)

                                           TTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTG                                                 <  SRR4302537.574775/94‑1 (MQ=60)

                                             CGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAA                                               <  SRR4302537.1536457/94‑1 (MQ=60)

                                               CAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACT                                             >  SRR4302537.952981/1‑94 (MQ=60)

                                                AAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGACCCCC‑CGCTGAGCGGTTTCGCGCATCACGCCGCGACCCAGGTTATTGCTGAACTG                                            >  SRR4302537.1768830/1‑94 (MQ=60)

                                                AAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTG                                            >  SRR4302537.1859569/1‑94 (MQ=60)

                                                AAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTG                                            >  SRR4302537.406245/1‑94 (MQ=60)

                                                  GAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTTCTGCACTTGA                                          >  SRR4302537.3537937/1‑94 (MQ=60)

                                                   AAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAA                                         >  SRR4302537.2656028/1‑94 (MQ=60)

                                                    AAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAAC                                        >  SRR4302537.3970351/1‑94 (MQ=60)

                                                    AAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAAC                                        <  SRR4302537.4831494/94‑1 (MQ=60)

                                                    AAACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAAC                                        >  SRR4302537.671447/1‑94 (MQ=60)

                                                     AACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACC                                       >  SRR4302537.265684/1‑94 (MQ=60)

                                                     AACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACC                                       <  SRR4302537.3170924/94‑1 (MQ=60)

                                                     AACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGCTATTGCTGAACTGGAACC                                       >  SRR4302537.1665321/1‑94 (MQ=60)

                                                      ACGCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCG                                      <  SRR4302537.4599942/94‑1 (MQ=60)

                                                        GCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTT                                    <  SRR4302537.3652434/94‑1 (MQ=60)

                                                        GCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTT                                    >  SRR4302537.5583477/1‑94 (MQ=60)

                                                        GCACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTT                                    <  SRR4302537.3395517/94‑1 (MQ=60)

                                                         CACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTC                                   <  SRR4302537.2150599/94‑1 (MQ=60)

                                                         CACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTC                                   >  SRR4302537.2947644/1‑94 (MQ=60)

                                                          ACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCG                                  <  SRR4302537.3686679/94‑1 (MQ=60)

                                                          ACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCG                                  >  SRR4302537.5142030/1‑94 (MQ=60)

                                                          ACTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGGTATTGCTGAACTGGAACCGTTCG                                  >  SRR4302537.195911/1‑94 (MQ=60)

                                                           CTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGA                                 >  SRR4302537.4569213/1‑94 (MQ=60)

                                                           CTGACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGA                                 >  SRR4302537.689879/1‑94 (MQ=60)

                                                             GACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACC                               >  SRR4302537.3378666/1‑94 (MQ=60)

                                                             GACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACC                               <  SRR4302537.2603597/94‑1 (MQ=60)

                                                             GACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACC                               <  SRR4302537.5182700/94‑1 (MQ=60)

                                                              ACTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCG                              >  SRR4302537.6187092/1‑94 (MQ=60)

                                                               CTCTGGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGC                             >  SRR4302537.1320839/1‑94 (MQ=60)

                                                                   GGCCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAAC                         >  SRR4302537.2773445/1‑94 (MQ=60)

                                                                     CCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTTGAACCGTTCGACCGCGAACTG                       >  SRR4302537.3511970/1‑94 (MQ=60)

                                                                     CCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTG                       >  SRR4302537.1336269/1‑94 (MQ=60)

                                                                     CCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTG                       <  SRR4302537.5162543/94‑1 (MQ=60)

                                                                     CCTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTG                       >  SRR4302537.1994645/1‑94 (MQ=60)

                                                                      CTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCTGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGT                      <  SRR4302537.2871150/94‑1 (MQ=60)

                                                                      CTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGT                      >  SRR4302537.2263388/1‑94 (MQ=60)

                                                                      CTGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGT                      <  SRR4302537.3470185/94‑1 (MQ=60)

                                                                       TGTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTT                     >  SRR4302537.2193695/1‑94 (MQ=60)

                                                                        GTCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTT                    >  SRR4302537.6340474/1‑94 (MQ=60)

                                                                         TCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTG                   >  SRR4302537.1687184/1‑94 (MQ=60)

                                                                         TCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTG                   <  SRR4302537.4192611/94‑1 (MQ=60)

                                                                         TCTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGAGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTG                   <  SRR4302537.3205592/94‑1 (MQ=60)

                                                                          CTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGG                  <  SRR4302537.5965364/94‑1 (MQ=60)

                                                                          CTGCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGG                  >  SRR4302537.1489198/1‑94 (MQ=60)

                                                                            GCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGTACTGGAACCGTTCGACCGCGAACTGTTTGGCG                >  SRR4302537.2828245/1‑94 (MQ=60)

                                                                            GCTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCG                <  SRR4302537.1060554/94‑1 (MQ=60)

                                                                             CTGCATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGG               <  SRR4302537.1358344/94‑1 (MQ=60)

                                                                                CATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCCGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCAT            >  SRR4302537.1774054/1‑94 (MQ=60)

                                                                                CATCCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCAT            >  SRR4302537.4307730/1‑94 (MQ=60)

                                                                                   CCGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGT         <  SRR4302537.6067112/94‑1 (MQ=60)

                                                                                   CCGA‑CCCCGCGCTGAGCGGGTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGTAGCGTTCGACCGCGAACTGTGTGGCGGCATTGT         >  SRR4302537.5516351/1‑94 (MQ=60)

                                                                                   CCG‑CCCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGT         <  SRR4302537.5118155/94‑1 (MQ=60)

                                                                                    CGA‑CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGCTCGACCGCGAACTGTTTGGCGGCATTGTG        >  SRR4302537.6094583/1‑94 (MQ=60)

                                                                                     cggCCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGTG        <  SRR4302537.2169998/91‑1 (MQ=60)

                                                                                      gaCCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGTGG       <  SRR4302537.2360926/92‑1 (MQ=60)

                                                                                       GCCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTAAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGTGGG      <  SRR4302537.3481359/94‑1 (MQ=60)

                                                                                       ACCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGTGGG      <  SRR4302537.3280858/94‑1 (MQ=60)

                                                                                        CCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGTGGGT     >  SRR4302537.1760380/1‑94 (MQ=60)

                                                                                           CGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGTGGGTTGG  <  SRR4302537.4115931/94‑1 (MQ=60)

CGACGCTGTGGCATCTCGCAACTCCCTTTGAAGGTAAAGCGAATTCGCAAGAAAACGCACTGACTCTGGCCTGTCTGCTGCATCCGACCCCCGCGCTGAGCGGTTTCCCGCATCAGGCCGCGACCCAGGTTATTGCTGAACTGGAACCGTTCGACCGCGAACTGTTTGGCGGCATTGTGGGTTGG  >  NC_000913/624922‑625106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`