Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	654,248	A→G	M315T (ATG→ACG)	dcuC ←	DcuC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	654,248	0	A	G	100.0%	851.2 / NA	244	M315T (ATG→ACG)	dcuC	DcuC
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (135/109); total (135/109)

Only 100 of 250 total aligned reads displayed.

GAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAAC  >  NC_000913/654158‑654337

gAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTc                                                                                         >  2:268334/1‑93 (MQ=255)

gAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTc                                                                                         >  2:6115833/1‑93 (MQ=255)

 aaCCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTca                                                                                        >  2:559766/1‑93 (MQ=255)

  aCCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTcac                                                                                       >  1:1033520/1‑93 (MQ=255)

    taaaCGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTcacca                                                                                     >  1:391157/2‑93 (MQ=255)

    cAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTcacca                                                                                     >  2:5968614/1‑93 (MQ=255)

      aaCGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACg                                                                                   >  2:90512/1‑93 (MQ=255)

      aaCGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACg                                                                                   >  1:2175471/1‑93 (MQ=255)

       aCGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGt                                                                                  >  2:6033391/1‑93 (MQ=255)

       aCGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGt                                                                                  >  1:3258806/1‑93 (MQ=255)

       aCGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGt                                                                                  <  1:4528136/93‑1 (MQ=255)

         gAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTa                                                                                >  1:3684096/1‑93 (MQ=255)

           ggTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGc                                                                              <  1:4450834/93‑1 (MQ=255)

            gTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCa                                                                             <  1:159439/93‑1 (MQ=255)

             tAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCaa                                                                            <  1:1242356/93‑1 (MQ=255)

              aGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCaaa                                                                           <  2:4188360/93‑1 (MQ=255)

               gCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAAc                                                                          <  1:2778537/93‑1 (MQ=255)

                 gATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGc                                                                        >  2:4392743/1‑93 (MQ=255)

                 gATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGc                                                                        >  2:42522/1‑93 (MQ=255)

                 gATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGc                                                                        >  1:5238893/1‑93 (MQ=255)

                 gATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGc                                                                        >  2:4576243/1‑93 (MQ=255)

                  aTAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCa                                                                       <  1:5868899/93‑1 (MQ=255)

                   tAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCAt                                                                      <  2:3275933/93‑1 (MQ=255)

                   tAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCAt                                                                      <  1:268334/93‑1 (MQ=255)

                    aGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATc                                                                     <  2:1296085/93‑1 (MQ=255)

                    aGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATc                                                                     >  1:3879454/1‑93 (MQ=255)

                    aGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATc                                                                     >  2:654578/1‑93 (MQ=255)

                     gAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCt                                                                    >  1:3309526/1‑93 (MQ=255)

                     gAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCt                                                                    <  2:4964859/93‑1 (MQ=255)

                     gAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCt                                                                    >  2:2190560/1‑93 (MQ=255)

                     gAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGCTAGCAAACGCATCt                                                                    >  2:692372/1‑93 (MQ=255)

                      aaaTCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTg                                                                   <  1:1601903/93‑1 (MQ=255)

                        aTCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGcc                                                                 >  2:2457938/1‑93 (MQ=255)

                         tCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCa                                                                <  1:4472021/93‑1 (MQ=255)

                         tCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCa                                                                >  1:5764803/1‑93 (MQ=255)

                          cAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCAt                                                               <  2:3143107/93‑1 (MQ=255)

                          cAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCAt                                                               <  1:6079501/93‑1 (MQ=255)

                            gACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATcc                                                             <  2:3809371/93‑1 (MQ=255)

                             aCTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATccc                                                            >  2:1038108/1‑93 (MQ=255)

                             aCTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATccc                                                            <  2:4106452/93‑1 (MQ=255)

                             aCTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAAACAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATccc                                                            >  2:4166265/1‑93 (MQ=255)

                              cTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCcg                                                           <  1:4273061/93‑1 (MQ=255)

                              cTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCcg                                                           >  1:5758290/1‑93 (MQ=255)

                               tttGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCcgc                                                          <  1:58916/93‑1 (MQ=255)

                               tttGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCcgc                                                          >  1:251623/1‑93 (MQ=255)

                                ttGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCcgcg                                                         >  1:2436798/1‑93 (MQ=255)

                                   aaTAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATa                                                      <  2:4695654/93‑1 (MQ=255)

                                    aTAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATaa                                                     >  1:5534061/1‑93 (MQ=255)

                                    aTAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATaa                                                     <  2:2027347/93‑1 (MQ=255)

                                      aaaGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGc                                                   <  2:549174/93‑1 (MQ=255)

                                      aaaGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGc                                                   <  1:3059583/93‑1 (MQ=255)

                                       aaGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGcc                                                  <  2:5076878/93‑1 (MQ=255)

                                        aGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCa                                                 <  1:6352904/93‑1 (MQ=255)

                                        aGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCa                                                 >  1:2018208/1‑93 (MQ=255)

                                         gCCGATGGTGCTAAGCCCCTGAGCGAATCCCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCAc                                                <  1:4735207/93‑1 (MQ=255)

                                         gCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCAc                                                <  2:5793841/93‑1 (MQ=255)

                                         gCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCAc                                                >  1:4821721/1‑93 (MQ=255)

                                         gCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCAc                                                >  2:5130280/1‑93 (MQ=255)

                                          ctgATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACt                                               >  2:117691/3‑93 (MQ=255)

                                          ccGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACt                                               >  2:2922647/1‑93 (MQ=255)

                                           cGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACtt                                              >  2:5822077/1‑93 (MQ=255)

                                            gATGGTACTAAGCCCCTGAGCGAATCCCCCAGCGGCAACCAGCAGCGTCACCACGTCAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTc                                             <  2:1975961/93‑1 (MQ=255)

                                              tGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTcca                                           >  1:604727/1‑93 (MQ=255)

                                              tGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTcca                                           >  1:4887581/1‑93 (MQ=255)

                                              tGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTcca                                           >  1:3232139/1‑93 (MQ=255)

                                                 tGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTccagac                                        <  2:1121552/93‑1 (MQ=255)

                                                  gCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTccagacc                                       <  1:281150/93‑1 (MQ=255)

                                                    tAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTccagaccag                                     >  2:2559546/1‑93 (MQ=255)

                                                    tAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTccagaccag                                     >  2:305228/1‑93 (MQ=255)

                                                    tAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTccagaccag                                     >  2:6423787/1‑93 (MQ=255)

                                                    tAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTccagaccag                                     <  1:6425929/93‑1 (MQ=255)

                                                     aaGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTccagaccaga                                    <  1:5362318/93‑1 (MQ=255)

                                                      aGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCagag                                   >  1:3536347/1‑93 (MQ=255)

                                                      aGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCagag                                   >  2:3478280/1‑93 (MQ=255)

                                                      aGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCagag                                   <  1:1863229/93‑1 (MQ=255)

                                                      aGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCagag                                   >  1:3841042/1‑93 (MQ=255)

                                                       gCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAgaga                                  <  1:3326355/93‑1 (MQ=255)

                                                        ccccTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGaa                                 >  1:5204839/1‑93 (MQ=255)

                                                         cccTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGaaa                                <  2:2818790/93‑1 (MQ=255)

                                                         cccTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGaaa                                >  2:4750164/1‑93 (MQ=255)

                                                         accTGAGCGAATACCCCAGCGGCCAACAGCAGCGTCACCACGTTACCAAACGCATCTGCCATCCCGCGATACGCAACTTCCAGACCAGAGaac                                >  2:1720699/2‑92 (MQ=255)

                                                               gCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTc                          >  2:2041588/1‑93 (MQ=255)

                                                                 gAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTg                        >  1:5503360/1‑93 (MQ=255)

                                                                 gAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTg                        >  1:3780407/1‑93 (MQ=255)

                                                                  aaTACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTgg                       <  1:3989031/93‑1 (MQ=255)

                                                                    tACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGt                     >  1:2631779/1‑93 (MQ=255)

                                                                    tACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGt                     >  2:3533159/1‑93 (MQ=255)

                                                                    tACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATACCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGt                     >  1:3114818/1‑93 (MQ=255)

                                                                      ccccAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTAt                   >  1:946031/1‑93 (MQ=255)

                                                                       cccAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTAtt                  <  2:942408/93‑1 (MQ=255)

                                                                       cccAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTAtt                  <  1:458664/93‑1 (MQ=255)

                                                                         cAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTaa                >  2:4008423/1‑93 (MQ=255)

                                                                         cAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTaa                <  1:5353109/93‑1 (MQ=255)

                                                                         cAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTaa                <  1:5097685/93‑1 (MQ=255)

                                                                         cAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTaa                >  1:167276/1‑93 (MQ=255)

                                                                          aGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTaaa               <  2:1565571/93‑1 (MQ=255)

                                                                           gCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAg              <  2:2941534/93‑1 (MQ=255)

                                                                                aaCCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCg         >  2:4864494/1‑93 (MQ=255)

                                                                                aaCCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCg         >  1:1156719/1‑93 (MQ=255)

                                                                                  ccAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCgga       <  1:1121032/93‑1 (MQ=255)

GAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAAC  >  NC_000913/654158‑654337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCCA  >  NC_000913/654155‑654341

GCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCG                                                                                               >  SRR4302537.5116393/1‑94 (MQ=60)

 CCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGT                                                                                              >  SRR4302537.870902/1‑94 (MQ=60)

  CGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTC                                                                                             >  SRR4302537.3299050/1‑94 (MQ=60)

  CGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTC                                                                                             <  SRR4302537.2930706/94‑1 (MQ=60)

   GAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCA                                                                                            >  SRR4302537.5459115/1‑94 (MQ=60)

    AACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCAC                                                                                           >  SRR4302537.1040641/1‑94 (MQ=60)

      CTAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCA                                                                                         >  SRR4302537.393862/1‑94 (MQ=60)

       CAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCAC                                                                                        <  SRR4302537.4782650/94‑1 (MQ=60)

        AAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACG                                                                                       >  SRR4302537.3993697/1‑94 (MQ=60)

        AAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACG                                                                                       <  SRR4302537.3887006/94‑1 (MQ=60)

        AAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACG                                                                                       >  SRR4302537.2190806/1‑94 (MQ=60)

         AACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGT                                                                                      >  SRR4302537.3281785/1‑94 (MQ=60)

          ACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTT                                                                                     <  SRR4302537.4559489/94‑1 (MQ=60)

           CGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTA                                                                                    <  SRR4302537.4664990/94‑1 (MQ=60)

           CGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTA                                                                                    >  SRR4302537.4497003/1‑94 (MQ=60)

           CGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTA                                                                                    >  SRR4302537.3710005/1‑94 (MQ=60)

            GAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAG                                                                                   <  SRR4302537.3338697/94‑1 (MQ=60)

              GGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCA                                                                                 <  SRR4302537.4481577/94‑1 (MQ=60)

              GGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCA                                                                                 >  SRR4302537.2273298/1‑94 (MQ=60)

               GTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAA                                                                                <  SRR4302537.160573/94‑1 (MQ=60)

                TAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAA                                                                               <  SRR4302537.1251014/94‑1 (MQ=60)

                 AGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAAC                                                                              <  SRR4302537.5397261/94‑1 (MQ=60)

                 AGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAAC                                                                              >  SRR4302537.2675701/1‑94 (MQ=60)

                 AGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAAC                                                                              <  SRR4302537.844629/94‑1 (MQ=60)

                  GCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACG                                                                             <  SRR4302537.2797967/94‑1 (MQ=60)

                   CGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGC                                                                            >  SRR4302537.2065545/1‑94 (MQ=60)

                   CGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGC                                                                            >  SRR4302537.5274941/1‑94 (MQ=60)

                     ATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCAT                                                                          <  SRR4302537.5909160/94‑1 (MQ=60)

                     ATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCAT                                                                          >  SRR4302537.2465212/1‑94 (MQ=60)

                      TAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATC                                                                         <  SRR4302537.6157859/94‑1 (MQ=60)

                      TAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATC                                                                         >  SRR4302537.3906585/1‑94 (MQ=60)

                      TAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATC                                                                         <  SRR4302537.270222/94‑1 (MQ=60)

                       AGAGATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCT                                                                        <  SRR4302537.5166040/94‑1 (MQ=60)

                       AGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCT                                                                        <  SRR4302537.4031093/94‑1 (MQ=60)

                       AGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCT                                                                        >  SRR4302537.3332934/1‑94 (MQ=60)

                         AAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGC                                                                      >  SRR4302537.4503571/1‑94 (MQ=60)

                         AAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGC                                                                      <  SRR4302537.1613100/94‑1 (MQ=60)

                           ATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCA                                                                    >  SRR4302537.980930/1‑94 (MQ=60)

                           ATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCA                                                                    <  SRR4302537.3119410/94‑1 (MQ=60)

                           ATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCA                                                                    >  SRR4302537.5804291/1‑94 (MQ=60)

                            TCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCAT                                                                   <  SRR4302537.4502958/94‑1 (MQ=60)

                            TCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCAT                                                                   <  SRR4302537.4340937/94‑1 (MQ=60)

                             CAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATC                                                                  <  SRR4302537.6121278/94‑1 (MQ=60)

                             CAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATC                                                                  >  SRR4302537.1324322/1‑94 (MQ=60)

                              AGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCC                                                                 >  SRR4302537.1616277/1‑94 (MQ=60)

                                ACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCG                                                               >  SRR4302537.5797733/1‑94 (MQ=60)

                                 CTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGC                                                              >  SRR4302537.744689/1‑94 (MQ=60)

                                 CTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGC                                                              <  SRR4302537.4302754/94‑1 (MQ=60)

                                 CTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGC                                                              >  SRR4302537.253412/1‑94 (MQ=60)

                                 CTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGC                                                              >  SRR4302537.6442071/1‑94 (MQ=60)

                                  TTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCG                                                             <  SRR4302537.59344/94‑1 (MQ=60)

                                  TTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCG                                                             >  SRR4302537.2453963/1‑94 (MQ=60)

                                    TGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGCT                                                           >  SRR4302537.2889977/1‑94 (MQ=60)

                                    TGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGAT                                                           >  SRR4302537.380114/1‑94 (MQ=60)

                                      AATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAA                                                         >  SRR4302537.5571835/1‑94 (MQ=60)

                                       ATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCTTCTGCCATCCCGCGATAAG                                                        <  SRR4302537.3765786/94‑1 (MQ=60)

                                       ATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAG                                                        <  SRR4302537.4861919/94‑1 (MQ=60)

                                        TAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGC                                                       >  SRR4302537.5800638/1‑94 (MQ=60)

                                        TAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGC                                                       >  SRR4302537.3381957/1‑94 (MQ=60)

                                         AAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCC                                                      <  SRR4302537.3080899/94‑1 (MQ=60)

                                          AAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCA                                                     >  SRR4302537.2032278/1‑94 (MQ=60)

                                          AAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCA                                                     >  SRR4302537.5838405/1‑94 (MQ=60)

                                           AGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCAC                                                    <  SRR4302537.6396275/94‑1 (MQ=60)

                                           AGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCAC                                                    >  SRR4302537.4855026/1‑94 (MQ=60)

                                           AGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCAC                                                    >  SRR4302537.2772649/1‑94 (MQ=60)

                                           AGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCAC                                                    <  SRR4302537.5621376/94‑1 (MQ=60)

                                            GCCGATGGTGCTAAGCCCCTGAGCGAATCCCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACT                                                   <  SRR4302537.4767926/94‑1 (MQ=60)

                                             CCGATGTTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTT                                                  <  SRR4302537.537595/94‑1 (MQ=60)

                                               GATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCC                                                <  SRR4302537.116377/94‑1 (MQ=60)

                                               GATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCC                                                <  SRR4302537.2702132/94‑1 (MQ=60)

                                               GATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCC                                                <  SRR4302537.4566449/94‑1 (MQ=60)

                                               GATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCC                                                >  SRR4302537.5546255/1‑94 (MQ=60)

                                                ATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCA                                               >  SRR4302537.608859/1‑94 (MQ=60)

                                                ATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCA                                               <  SRR4302537.2827374/94‑1 (MQ=60)

                                                ATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCA                                               >  SRR4302537.3254914/1‑94 (MQ=60)

                                                ATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCA                                               >  SRR4302537.4921329/1‑94 (MQ=60)

                                                ATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCA                                               <  SRR4302537.5260777/94‑1 (MQ=60)

                                                ATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCA                                               <  SRR4302537.3200261/94‑1 (MQ=60)

                                                 TGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAG                                              >  SRR4302537.4505667/1‑94 (MQ=60)

                                                 TGGTGCTAAGCCCCTGAGCGAATAACCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAG                                              >  SRR4302537.5492055/1‑94 (MQ=60)

                                                  GGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGA                                             <  SRR4302537.6091979/94‑1 (MQ=60)

                                                     GCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCA                                          >  SRR4302537.3248943/1‑94 (MQ=60)

                                                     GCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCA                                          <  SRR4302537.283112/94‑1 (MQ=60)

                                                      CTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAG                                         <  SRR4302537.5386136/94‑1 (MQ=60)

                                                      CTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAG                                         >  SRR4302537.1145715/1‑94 (MQ=60)

                                                      CTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAG                                         <  SRR4302537.3277882/94‑1 (MQ=60)

                                                       TAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGA                                        <  SRR4302537.5143194/94‑1 (MQ=60)

                                                       TAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGA                                        <  SRR4302537.6469593/94‑1 (MQ=60)

                                                        AAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAG                                       <  SRR4302537.3696731/94‑1 (MQ=60)

                                                        AAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAG                                       <  SRR4302537.5399029/94‑1 (MQ=60)

                                                        AAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAG                                       <  SRR4302537.1741148/94‑1 (MQ=60)

                                                        AAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAG                                       >  SRR4302537.3867946/1‑94 (MQ=60)

                                                        AAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAG                                       >  SRR4302537.4663517/1‑94 (MQ=60)

                                                        AAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAG                                       >  SRR4302537.3561329/1‑94 (MQ=60)

                                                         AGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCATACCAGAGA                                      >  SRR4302537.2611558/1‑94 (MQ=60)

                                                         AGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGA                                      <  SRR4302537.1876205/94‑1 (MQ=60)

                                                          GCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAA                                     <  SRR4302537.3349892/94‑1 (MQ=60)

                                                          GCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAA                                     >  SRR4302537.5240642/1‑94 (MQ=60)

                                                           CCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAA                                    >  SRR4302537.3878909/1‑94 (MQ=60)

                                                            CCCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAA                                   <  SRR4302537.5930641/94‑1 (MQ=60)

                                                             CCTGAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAAC                                  <  SRR4302537.1652652/94‑1 (MQ=60)

                                                                GAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTT                               <  SRR4302537.5880353/94‑1 (MQ=60)

                                                                GAGCGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTT                               >  SRR4302537.1964938/1‑94 (MQ=60)

                                                                   CGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTG                            >  SRR4302537.3806957/1‑94 (MQ=60)

                                                                   CGAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTG                            >  SRR4302537.5540939/1‑94 (MQ=60)

                                                                    GAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGG                           >  SRR4302537.6064997/1‑94 (MQ=60)

                                                                    GAATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGG                           >  SRR4302537.1118547/1‑94 (MQ=60)

                                                                     AATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGG                          <  SRR4302537.4016965/94‑1 (MQ=60)

                                                                     AATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGG                          >  SRR4302537.1215369/1‑94 (MQ=60)

                                                                      ATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGT                         >  SRR4302537.2650206/1‑94 (MQ=60)

                                                                      ATACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATACCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGT                         >  SRR4302537.3136573/1‑94 (MQ=60)

                                                                        ACCCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTAT                       >  SRR4302537.952571/1‑94 (MQ=60)

                                                                          CCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTA                     <  SRR4302537.2543267/94‑1 (MQ=60)

                                                                          CCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTA                     <  SRR4302537.461826/94‑1 (MQ=60)

                                                                          CCCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTA                     >  SRR4302537.3913965/1‑94 (MQ=60)

                                                                           CCAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAA                    >  SRR4302537.168469/1‑94 (MQ=60)

                                                                            CAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAA                   <  SRR4302537.5389772/94‑1 (MQ=60)

                                                                            CAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAA                   >  SRR4302537.2191028/1‑94 (MQ=60)

                                                                            CAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAA                   <  SRR4302537.5132792/94‑1 (MQ=60)

                                                                            CAGCGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAA                   <  SRR4302537.4868067/94‑1 (MQ=60)

                                                                              GCGGCCACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGC                 <  SRR4302537.138899/94‑1 (MQ=60)

                                                                               CGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCT                <  SRR4302537.5780227/94‑1 (MQ=60)

                                                                               CGGCAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCT                <  SRR4302537.5046819/94‑1 (MQ=60)

                                                                                  CAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCG             >  SRR4302537.1164767/1‑94 (MQ=60)

                                                                                  CAACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCG             >  SRR4302537.4338158/1‑94 (MQ=60)

                                                                                    ACCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGA           >  SRR4302537.395512/1‑94 (MQ=60)

                                                                                     CCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAG          <  SRR4302537.2007730/94‑1 (MQ=60)

                                                                                     CCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAG          <  SRR4302537.1128801/94‑1 (MQ=60)

                                                                                     CCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAG          >  SRR4302537.2914889/1‑94 (MQ=60)

                                                                                     CCAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAG          <  SRR4302537.3303454/94‑1 (MQ=60)

                                                                                      CAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGG         >  SRR4302537.3842056/1‑94 (MQ=60)

                                                                                      CAGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGG         >  SRR4302537.6358064/1‑94 (MQ=60)

                                                                                       AGCAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGA        >  SRR4302537.6025772/1‑94 (MQ=60)

                                                                                         CAGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAAC      >  SRR4302537.160904/1‑94 (MQ=60)

                                                                                          AGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACT     >  SRR4302537.6179414/1‑94 (MQ=60)

                                                                                          AGCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACT     <  SRR4302537.3452511/94‑1 (MQ=60)

                                                                                           GCGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTC    <  SRR4302537.6114549/94‑1 (MQ=60)

                                                                                            CGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCC   >  SRR4302537.2312915/1‑94 (MQ=60)

                                                                                            CGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCC   >  SRR4302537.2954006/1‑94 (MQ=60)

                                                                                            CGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCC   >  SRR4302537.2954007/1‑94 (MQ=60)

                                                                                            CGTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCC   <  SRR4302537.3548198/94‑1 (MQ=60)

                                                                                             GTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCCA  >  SRR4302537.4299490/1‑94 (MQ=60)

                                                                                             GTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCCA  >  SRR4302537.3071269/1‑94 (MQ=60)

                                                                                             GTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCCA  <  SRR4302537.6312462/94‑1 (MQ=60)

                                                                                             GTCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCCA  <  SRR4302537.6033191/94‑1 (MQ=60)

GCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTCTGGGTATTAAAGCTGCGGAGGAACTCCA  >  NC_000913/654155‑654341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`