Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 742,023 A→G intergenic (‑244/‑27) ybgH ← / → ybgI putative transport protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913742,0230AG100.0% 788.8 / NA 225intergenic (‑244/‑27)ybgH/ybgIputative transport protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (98/127);  total (98/127)

Only 100 of 232 total aligned reads displayed.

ATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGAT  >  NC_000913/741933‑742112
                                                                                          |                                                                                         
aTTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGc                                                                                         <  1:3329954/93‑1 (MQ=255)
aTTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGc                                                                                         <  2:188654/93‑1 (MQ=255)
 tttGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCt                                                                                        >  2:2087554/1‑93 (MQ=255)
  ttGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTa                                                                                       >  1:6436505/1‑93 (MQ=255)
    gCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGGAACGCTATGTTAACGGTGTGGGTATc                                                                                     >  2:1231161/1‑93 (MQ=255)
     cGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCa                                                                                    <  1:780940/93‑1 (MQ=255)
     cGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCa                                                                                    <  2:295206/93‑1 (MQ=255)
         ttttGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAAt                                                                                >  2:2484534/1‑93 (MQ=255)
          tttGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATa                                                                               >  2:941002/1‑93 (MQ=255)
          tttGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATa                                                                               <  2:412468/93‑1 (MQ=255)
           ttGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATAc                                                                              <  1:586322/93‑1 (MQ=255)
            tGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACg                                                                             >  1:88109/1‑93 (MQ=255)
            tGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTAGCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACg                                                                             <  1:155587/93‑1 (MQ=255)
             ggCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACgg                                                                            <  2:5526991/93‑1 (MQ=255)
              gCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGa                                                                           <  2:4348436/93‑1 (MQ=255)
               cGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGaa                                                                          <  1:4888504/93‑1 (MQ=255)
                gTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAg                                                                         >  2:1574354/1‑93 (MQ=255)
                gTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAg                                                                         <  1:2901981/93‑1 (MQ=255)
                gTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAg                                                                         <  2:5598384/93‑1 (MQ=255)
                gTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAg                                                                         <  1:5411864/93‑1 (MQ=255)
                    ggTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGgcgc                                                                     <  1:6363308/93‑1 (MQ=255)
                      tttgtttCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGa                                                                   >  2:1966231/1‑93 (MQ=255)
                        tgtttCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAg                                                                 >  1:950490/1‑93 (MQ=255)
                         gtttCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGa                                                                >  2:3309360/1‑93 (MQ=255)
                          tttCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGAt                                                               >  2:4584537/1‑93 (MQ=255)
                          tttCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGAt                                                               <  1:1348933/93‑1 (MQ=255)
                          tttCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGAt                                                               >  2:5302899/1‑93 (MQ=255)
                           ttCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATg                                                              >  1:2532683/1‑93 (MQ=255)
                           ttCTTAATATATCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATg                                                              <  2:5042225/93‑1 (MQ=255)
                            tCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGa                                                             <  1:1909090/93‑1 (MQ=255)
                            tCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGa                                                             >  2:5972629/1‑93 (MQ=255)
                             cTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGaa                                                            <  1:4029921/93‑1 (MQ=255)
                              ttAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGTAGGCGCGATGATGaaa                                                           >  1:467385/1‑93 (MQ=255)
                              ttAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGaaa                                                           >  1:5502567/1‑93 (MQ=255)
                                 atatGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAac                                                        <  1:1268872/93‑1 (MQ=255)
                                 atatGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAac                                                        >  2:65658/1‑93 (MQ=255)
                                    tGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACAcc                                                     <  2:117220/93‑1 (MQ=255)
                                      tCAAAAGATTGGCTATCGATGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGa                                                   >  2:6290572/1‑93 (MQ=255)
                                       cAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGaa                                                  <  1:3658099/93‑1 (MQ=255)
                                        aaaaGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAAc                                                 <  2:4378115/93‑1 (MQ=255)
                                          aaGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTg                                               <  2:481354/93‑1 (MQ=255)
                                            gATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGa                                             >  2:2790410/1‑93 (MQ=255)
                                             aTTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGaa                                            <  2:292229/93‑1 (MQ=255)
                                              ttGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGaac                                           <  1:2158753/93‑1 (MQ=255)
                                               tGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGaaca                                          >  1:5427446/1‑93 (MQ=255)
                                                  cTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACt                                       >  1:4582542/1‑93 (MQ=255)
                                                  cTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACt                                       >  1:1837113/1‑93 (MQ=255)
                                                  cTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACt                                       <  2:3423561/93‑1 (MQ=255)
                                                  cTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACt                                       <  2:4630106/93‑1 (MQ=255)
                                                   tATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTg                                      >  1:5107595/1‑93 (MQ=255)
                                                   tATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTg                                      >  2:3115833/1‑93 (MQ=255)
                                                    aTCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGa                                     >  2:5216427/1‑93 (MQ=255)
                                                    aTCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGa                                     <  1:5143859/93‑1 (MQ=255)
                                                    aTCGACGAACTGGCGAGGGAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAATGCGCGAAGATGAAAAACACCGAACTGGAACAACTGa                                     >  2:3953743/1‑93 (MQ=255)
                                                      cgacgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGAtt                                   >  1:3236148/1‑93 (MQ=255)
                                                      cgacgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGAtt                                   <  1:6208199/93‑1 (MQ=255)
                                                       gacgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTa                                  >  1:1103508/1‑93 (MQ=255)
                                                       gacgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTa                                  <  1:3119843/93‑1 (MQ=255)
                                                       gacgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTa                                  <  2:416340/93‑1 (MQ=255)
                                                       gacgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTa                                  <  1:2507895/93‑1 (MQ=255)
                                                       gacgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTa                                  <  2:3878343/93‑1 (MQ=255)
                                                        acgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTaa                                 <  2:1030681/93‑1 (MQ=255)
                                                        acgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTaa                                 >  1:4273830/1‑93 (MQ=255)
                                                         cgaACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTCGAACAACTGATTAAc                                >  2:1502163/1‑93 (MQ=255)
                                                           aaCTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGa                              >  2:1631402/1‑93 (MQ=255)
                                                           aaCTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGa                              >  1:3837741/1‑93 (MQ=255)
                                                            aCTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGaa                             <  1:4404062/93‑1 (MQ=255)
                                                               ggCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGaaaaa                          <  2:3227567/93‑1 (MQ=255)
                                                                gCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAAc                         <  2:5023228/93‑1 (MQ=255)
                                                                gCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAAc                         <  2:3563853/93‑1 (MQ=255)
                                                                    ggTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGaa                     >  1:2242520/1‑93 (MQ=255)
                                                                     gTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAAc                    <  1:3809437/93‑1 (MQ=255)
                                                                     gTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAAc                    <  2:4009624/93‑1 (MQ=255)
                                                                      tAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACa                   <  2:4421319/93‑1 (MQ=255)
                                                                      tAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACa                   <  2:4863923/93‑1 (MQ=255)
                                                                      tAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACa                   <  1:3414973/93‑1 (MQ=255)
                                                                      tAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCAAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACa                   <  2:2256150/93‑1 (MQ=255)
                                                                       aaCGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAg                  >  1:4069099/1‑93 (MQ=255)
                                                                        aCGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAgc                 >  2:3408582/1‑93 (MQ=255)
                                                                         cGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAgcg                <  2:5391478/93‑1 (MQ=255)
                                                                          gCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAgcgc               >  1:2859974/1‑93 (MQ=255)
                                                                           cTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGcgcg              <  1:2931255/93‑1 (MQ=255)
                                                                             aTGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCgcggc            <  1:4751179/93‑1 (MQ=255)
                                                                             aTGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCgcggc            <  2:4574599/93‑1 (MQ=255)
                                                                             aTGTTAACGGTGTGACTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCgcggc            <  1:5684325/93‑1 (MQ=255)
                                                                              tGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCgcggcg           >  2:1859613/1‑93 (MQ=255)
                                                                              tGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCgcggcg           >  2:5093514/1‑93 (MQ=255)
                                                                               gTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGa          >  1:5013627/1‑93 (MQ=255)
                                                                                ttAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGAt         <  2:69588/93‑1 (MQ=255)
                                                                                ttAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGAt         >  1:600597/1‑93 (MQ=255)
                                                                                 tAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGAtt        <  1:3996224/93‑1 (MQ=255)
                                                                                 tAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGAtt        >  2:2606393/1‑93 (MQ=255)
                                                                                  aaCGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTa       <  1:3263358/93‑1 (MQ=255)
                                                                                  aaCGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTa       <  1:1664746/93‑1 (MQ=255)
                                                                                  aaCGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTa       >  1:2113123/1‑93 (MQ=255)
                                                                                    cGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGt     <  1:4176280/93‑1 (MQ=255)
                                                                                      gtgtGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGa   <  1:745159/93‑1 (MQ=255)
                                                                                      gtgtGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGa   <  1:4834005/93‑1 (MQ=255)
                                                                                      gtgtGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGa   <  1:2423949/93‑1 (MQ=255)
                                                                                      gtgtGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGa   >  2:4175244/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGAT  >  NC_000913/741933‑742112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGATTACG  >  NC_000913/741930‑742116
                                                                                             |                                                                                             
ACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTG                                                                                               <  SRR4302537.6038893/94‑1 (MQ=60)
 CAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGG                                                                                              >  SRR4302537.3754513/1‑94 (MQ=60)
 CAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGG                                                                                              >  SRR4302537.6268785/1‑94 (MQ=60)
 CAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGG                                                                                              >  SRR4302537.6034049/1‑94 (MQ=60)
  AATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGC                                                                                             <  SRR4302537.792908/94‑1 (MQ=60)
  AATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGC                                                                                             >  SRR4302537.4039743/1‑94 (MQ=60)
  AATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGC                                                                                             <  SRR4302537.4479259/94‑1 (MQ=60)
   ATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCT                                                                                            <  SRR4302537.1005941/94‑1 (MQ=60)
   ATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCT                                                                                            <  SRR4302537.3353516/94‑1 (MQ=60)
    TTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTA                                                                                           >  SRR4302537.6480206/1‑94 (MQ=60)
     TTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTAT                                                                                          <  SRR4302537.5409484/94‑1 (MQ=60)
        CGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAG                                                                                       <  SRR4302537.786302/94‑1 (MQ=60)
        CGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAG                                                                                       >  SRR4302537.783661/1‑94 (MQ=60)
         GTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGA                                                                                      >  SRR4302537.3047354/1‑94 (MQ=60)
           CTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAAT                                                                                    >  SRR4302537.4980637/1‑94 (MQ=60)
             TTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATAC                                                                                  <  SRR4302537.1988141/94‑1 (MQ=60)
             TTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATAC                                                                                  <  SRR4302537.839568/94‑1 (MQ=60)
              TTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACG                                                                                 <  SRR4302537.590324/94‑1 (MQ=60)
              TTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACG                                                                                 >  SRR4302537.88747/1‑94 (MQ=60)
               TGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTAGCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGG                                                                                <  SRR4302537.156694/94‑1 (MQ=60)
                GGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGA                                                                               >  SRR4302537.4169060/1‑94 (MQ=60)
                  CGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAG                                                                             >  SRR4302537.3818048/1‑94 (MQ=60)
                  CGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAG                                                                             <  SRR4302537.636886/94‑1 (MQ=60)
                  CGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAG                                                                             <  SRR4302537.4922262/94‑1 (MQ=60)
                   GTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGG                                                                            <  SRR4302537.2922367/94‑1 (MQ=60)
                   GTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGG                                                                            <  SRR4302537.5448767/94‑1 (MQ=60)
                    TCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGC                                                                           <  SRR4302537.4817457/94‑1 (MQ=60)
                     CGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCG                                                                          <  SRR4302537.573043/94‑1 (MQ=60)
                      GGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGC                                                                         >  SRR4302537.6006647/1‑94 (MQ=60)
                      GGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGC                                                                         <  SRR4302537.1911079/94‑1 (MQ=60)
                      GGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGC                                                                         >  SRR4302537.90879/1‑94 (MQ=60)
                       GGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCG                                                                        >  SRR4302537.4316584/1‑94 (MQ=60)
                       GGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCG                                                                        <  SRR4302537.6406717/94‑1 (MQ=60)
                          TTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAG                                                                     >  SRR4302537.5144522/1‑94 (MQ=60)
                          TTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAG                                                                     >  SRR4302537.957061/1‑94 (MQ=60)
                             TTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATG                                                                  >  SRR4302537.2550454/1‑94 (MQ=60)
                             TTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATG                                                                  <  SRR4302537.1358333/94‑1 (MQ=60)
                             TTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATG                                                                  <  SRR4302537.3317948/94‑1 (MQ=60)
                              TTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGA                                                                 <  SRR4302537.5109306/94‑1 (MQ=60)
                               TCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAA                                                                <  SRR4302537.1922344/94‑1 (MQ=60)
                               TCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAA                                                                >  SRR4302537.1634122/1‑94 (MQ=60)
                                CTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGTAGGCGCGATGATGAAA                                                               >  SRR4302537.470596/1‑94 (MQ=60)
                                CTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAA                                                               >  SRR4302537.5666161/1‑94 (MQ=60)
                                CTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAA                                                               >  SRR4302537.5540139/1‑94 (MQ=60)
                                CTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAA                                                               <  SRR4302537.4058126/94‑1 (MQ=60)
                                 TTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAA                                                              <  SRR4302537.4881711/94‑1 (MQ=60)
                                  TAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAA                                                             >  SRR4302537.2073580/1‑94 (MQ=60)
                                  TAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAA                                                             >  SRR4302537.4045254/1‑94 (MQ=60)
                                   AATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAAC                                                            <  SRR4302537.5496970/94‑1 (MQ=60)
                                   AATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAAC                                                            <  SRR4302537.2532403/94‑1 (MQ=60)
                                   AATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAAC                                                            <  SRR4302537.2790217/94‑1 (MQ=60)
                                    ATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACA                                                           <  SRR4302537.1277700/94‑1 (MQ=60)
                                      ATGTCAAAAGATTGGCTATCGACTAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACC                                                         <  SRR4302537.644363/94‑1 (MQ=60)
                                      ATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACC                                                         <  SRR4302537.2931008/94‑1 (MQ=60)
                                       TGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCG                                                        <  SRR4302537.6053153/94‑1 (MQ=60)
                                        GTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGA                                                       <  SRR4302537.3555678/94‑1 (MQ=60)
                                        GTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTAGGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGA                                                       <  SRR4302537.3283115/94‑1 (MQ=60)
                                          CAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAAC                                                     <  SRR4302537.5656012/94‑1 (MQ=60)
                                          CAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAAC                                                     <  SRR4302537.3683843/94‑1 (MQ=60)
                                             AAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGG                                                  >  SRR4302537.1118673/1‑94 (MQ=60)
                                             AAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGATATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGG                                                  <  SRR4302537.4575208/94‑1 (MQ=60)
                                                ATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAAC                                               >  SRR4302537.4385128/1‑94 (MQ=60)
                                                 TTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACA                                              <  SRR4302537.1531879/94‑1 (MQ=60)
                                                 TTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACA                                              >  SRR4302537.5464452/1‑94 (MQ=60)
                                                 TTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACA                                              <  SRR4302537.2173969/94‑1 (MQ=60)
                                                 TTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACA                                              >  SRR4302537.1342703/1‑94 (MQ=60)
                                                    GCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACT                                           >  SRR4302537.1849901/1‑94 (MQ=60)
                                                    GCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACT                                           <  SRR4302537.1837367/94‑1 (MQ=60)
                                                    GCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACT                                           >  SRR4302537.4614239/1‑94 (MQ=60)
                                                     CTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTG                                          >  SRR4302537.5142792/1‑94 (MQ=60)
                                                     CTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTG                                          >  SRR4302537.4718556/1‑94 (MQ=60)
                                                       ATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGAT                                        <  SRR4302537.5179307/94‑1 (MQ=60)
                                                        TCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATT                                       >  SRR4302537.3258958/1‑94 (MQ=60)
                                                         CGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTA                                      >  SRR4302537.3863706/1‑94 (MQ=60)
                                                         CGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTA                                      <  SRR4302537.5013040/94‑1 (MQ=60)
                                                         CGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTA                                      >  SRR4302537.1111128/1‑94 (MQ=60)
                                                         CGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTA                                      <  SRR4302537.6250972/94‑1 (MQ=60)
                                                         CGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTA                                      <  SRR4302537.336803/94‑1 (MQ=60)
                                                          GACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAA                                     >  SRR4302537.674086/1‑94 (MQ=60)
                                                          GACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAA                                     <  SRR4302537.2525539/94‑1 (MQ=60)
                                                          GACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAA                                     <  SRR4302537.3141652/94‑1 (MQ=60)
                                                          GACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAA                                     <  SRR4302537.2502024/94‑1 (MQ=60)
                                                          GACGAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAA                                     >  SRR4302537.4303530/1‑94 (MQ=60)
                                                             GAACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGA                                  >  SRR4302537.3864627/1‑94 (MQ=60)
                                                              AACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAA                                 <  SRR4302537.3323532/94‑1 (MQ=60)
                                                               ACTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAA                                <  SRR4302537.4434452/94‑1 (MQ=60)
                                                                CTGGCGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAA                               >  SRR4302537.243619/1‑94 (MQ=60)
                                                                    CGAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTG                           >  SRR4302537.749411/1‑94 (MQ=60)
                                                                     GAGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGA                          <  SRR4302537.4092283/94‑1 (MQ=60)
                                                                      AGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAA                         >  SRR4302537.1620441/1‑94 (MQ=60)
                                                                      AGGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAA                         >  SRR4302537.2258330/1‑94 (MQ=60)
                                                                       GGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAAC                        <  SRR4302537.2977207/94‑1 (MQ=60)
                                                                       GGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAAC                        >  SRR4302537.289150/1‑94 (MQ=60)
                                                                       GGTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAAATGAAC                        <  SRR4302537.4220757/94‑1 (MQ=60)
                                                                        GTAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACA                       <  SRR4302537.3836146/94‑1 (MQ=60)
                                                                         TAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAG                      <  SRR4302537.6090777/94‑1 (MQ=60)
                                                                         TAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAG                      >  SRR4302537.4097522/1‑94 (MQ=60)
                                                                         TAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAG                      <  SRR4302537.2157158/94‑1 (MQ=60)
                                                                         TAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAG                      <  SRR4302537.3439152/94‑1 (MQ=60)
                                                                         TAACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAG                      <  SRR4302537.3221566/94‑1 (MQ=60)
                                                                           ACGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCG                    >  SRR4302537.4773536/1‑94 (MQ=60)
                                                                            CGCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGC                   >  SRR4302537.2880028/1‑94 (MQ=60)
                                                                             GCTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCG                  <  SRR4302537.3774674/94‑1 (MQ=60)
                                                                              CTATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGG                 <  SRR4302537.2951837/94‑1 (MQ=60)
                                                                                ATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCG               <  SRR4302537.4783998/94‑1 (MQ=60)
                                                                                ATGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCG               >  SRR4302537.5449723/1‑94 (MQ=60)
                                                                                ATGTTAACGGTGTGACTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCG               <  SRR4302537.5723202/94‑1 (MQ=60)
                                                                                 TGTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGA              >  SRR4302537.5048165/1‑94 (MQ=60)
                                                                                  GTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGAT             >  SRR4302537.2224245/1‑94 (MQ=60)
                                                                                  GTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGAT             <  SRR4302537.2846121/94‑1 (MQ=60)
                                                                                  GTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGAT             >  SRR4302537.241395/1‑94 (MQ=60)
                                                                                  GTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGAT             >  SRR4302537.604706/1‑94 (MQ=60)
                                                                                  GTTAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGAT             <  SRR4302537.4630394/94‑1 (MQ=60)
                                                                                    TAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTA           >  SRR4302537.2128014/1‑94 (MQ=60)
                                                                                    TAACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTA           <  SRR4302537.4024200/94‑1 (MQ=60)
                                                                                     AACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAG          <  SRR4302537.1676412/94‑1 (MQ=60)
                                                                                     AACGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAG          <  SRR4302537.3286378/94‑1 (MQ=60)
                                                                                       CGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTG        <  SRR4302537.4205435/94‑1 (MQ=60)
                                                                                       CGGTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTG        >  SRR4302537.3980903/1‑94 (MQ=60)
                                                                                         GTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGAT      <  SRR4302537.2441026/94‑1 (MQ=60)
                                                                                         GTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGAT      <  SRR4302537.750237/94‑1 (MQ=60)
                                                                                         GTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGAT      <  SRR4302537.4867383/94‑1 (MQ=60)
                                                                                         GTGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGAT      <  SRR4302537.5377419/94‑1 (MQ=60)
                                                                                          TGTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGATT     <  SRR4302537.914554/94‑1 (MQ=60)
                                                                                           GTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGATTA    >  SRR4302537.1695182/1‑94 (MQ=60)
                                                                                           GTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGATTA    <  SRR4302537.6258509/94‑1 (MQ=60)
                                                                                           GTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGATTA    <  SRR4302537.2553474/94‑1 (MQ=60)
                                                                                           GTGGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGATTA    >  SRR4302537.3340623/1‑94 (MQ=60)
                                                                                             GGCTATCAGAATACGGAATGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGATTACG  <  SRR4302537.1002626/94‑1 (MQ=60)
                                                                                             GGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGACAAACTGAGCAGCGCGGCGATTAGTGATTACG  >  SRR4302537.4640616/1‑94 (MQ=60)
                                                                                             GGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGATTACG  <  SRR4302537.6007741/94‑1 (MQ=60)
                                                                                             |                                                                                             
ACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACGGAAGGCGCGAAGATGAAAAACACCGAACTGGAACAACTGATTAACGAAAAACTGAACAGCGCGGCGATTAGTGATTACG  >  NC_000913/741930‑742116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑