Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	747,172	A→G	V345A (GTG→GCG)	ybgO ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	747,172	0	A	G	100.0%	818.3 / NA	231	V345A (GTG→GCG)	ybgO	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (134/97); total (134/97)

Only 100 of 238 total aligned reads displayed.

GGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACTG  >  NC_000913/747082‑747261

gggAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCt                                                                                         >  1:327578/1‑93 (MQ=255)

 ggAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTg                                                                                        <  2:1664633/93‑1 (MQ=255)

  gAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGt                                                                                       >  2:4855727/1‑93 (MQ=255)

   aaaaTCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTa                                                                                      <  2:6174189/93‑1 (MQ=255)

    aaaTCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTAt                                                                                     <  2:4145390/93‑1 (MQ=255)

     aaTCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATc                                                                                    <  2:1166400/93‑1 (MQ=255)

       tCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGa                                                                                  >  1:4157216/1‑93 (MQ=255)

       tCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGa                                                                                  >  1:5107665/1‑93 (MQ=255)

       tCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGa                                                                                  >  1:5191535/1‑93 (MQ=255)

       tCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGa                                                                                  >  1:2703904/1‑93 (MQ=255)

        cAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGaa                                                                                 <  1:1098124/93‑1 (MQ=255)

         aGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAg                                                                                <  2:3354692/93‑1 (MQ=255)

         aGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAg                                                                                >  2:27735/1‑93 (MQ=255)

         aGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAg                                                                                >  1:1814417/1‑93 (MQ=255)

         aGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAg                                                                                <  2:6254851/93‑1 (MQ=255)

          gCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAgt                                                                               <  2:4188559/93‑2 (MQ=255)

          gCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAgg                                                                               >  1:5836573/1‑93 (MQ=255)

          gCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAgg                                                                               >  1:5658432/1‑93 (MQ=255)

          gCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAgg                                                                               <  1:3489513/93‑1 (MQ=255)

          gCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAgg                                                                               >  1:4977074/1‑93 (MQ=255)

           cAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAggg                                                                              <  1:2122403/93‑1 (MQ=255)

             aTTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGc                                                                            <  2:5856802/93‑1 (MQ=255)

             aTTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGc                                                                            >  1:3941980/1‑93 (MQ=255)

             aTTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGc                                                                            >  1:4343572/1‑93 (MQ=255)

              ttttCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGcc                                                                           >  2:3242569/1‑93 (MQ=255)

               tttCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCa                                                                          <  2:3434874/93‑1 (MQ=255)

                ttCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAg                                                                         >  1:2443623/1‑93 (MQ=255)

                 tCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGc                                                                        >  2:1656759/1‑93 (MQ=255)

                   tGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCt                                                                      <  1:6229644/93‑1 (MQ=255)

                      aaGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGa                                                                   >  2:1414912/1‑93 (MQ=255)

                      aaGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGACAGCCTCGa                                                                   >  2:3183833/1‑93 (MQ=255)

                         agaTGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATgg                                                                >  2:2018206/1‑93 (MQ=255)

                         agaTGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATgg                                                                >  2:4418954/1‑93 (MQ=255)

                          gaTGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATggg                                                               >  2:2695134/1‑93 (MQ=255)

                          gaTGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATggg                                                               >  2:3618189/1‑93 (MQ=255)

                           aTGCCCTTTCCGGCGGCAAAGTGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATgggg                                                              >  1:5776590/1‑93 (MQ=255)

                            tGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATggggg                                                             <  2:2550850/93‑1 (MQ=255)

                            tGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATggggg                                                             <  1:3797718/93‑1 (MQ=255)

                            tGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATggggg                                                             <  2:2317699/93‑1 (MQ=255)

                            tGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATggggg                                                             >  2:1195295/1‑93 (MQ=255)

                               ccTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGc                                                          >  2:4557472/1‑93 (MQ=255)

                                cTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGcc                                                         <  1:6024434/93‑1 (MQ=255)

                                    ccGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGa                                                     <  2:2990847/93‑1 (MQ=255)

                                      ggcggcAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAAt                                                   <  2:5585370/93‑1 (MQ=255)

                                       gcggcAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATg                                                  <  2:5423904/93‑1 (MQ=255)

                                       gcggcAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATg                                                  <  2:1535547/93‑1 (MQ=255)

                                         ggcAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGa                                                <  1:6083553/93‑1 (MQ=255)

                                         ggcAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGa                                                <  1:5533049/93‑1 (MQ=255)

                                          gcAAAGGGCATCATGGTACATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCAAGCCTCGATGGGGGTGCCTGGAATGGAc                                               >  1:1974632/1‑93 (MQ=255)

                                          gcAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGAc                                               >  2:260354/1‑93 (MQ=255)

                                            aaaGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGa                                             <  1:1830532/93‑1 (MQ=255)

                                             aaGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGaa                                            >  2:6444386/1‑93 (MQ=255)

                                             aaGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGaa                                            <  2:5703755/93‑1 (MQ=255)

                                              aGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACaaaa                                           <  1:401989/93‑1 (MQ=255)

                                              aGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGaaa                                           >  1:6432065/1‑93 (MQ=255)

                                              aGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGaaa                                           <  1:1172328/93‑1 (MQ=255)

                                              aGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGaaa                                           <  2:3935488/93‑1 (MQ=255)

                                                 gCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGTCCAGCCTCGATGGGGGGGCCTGGAATGGACGAAAGtt                                        >  1:3699013/1‑93 (MQ=255)

                                                 gCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGtt                                        >  1:1561990/1‑93 (MQ=255)

                                                 gCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGCGAGCCTGGAATGGACGGAAGtt                                        >  2:3805793/1‑93 (MQ=255)

                                                  catcatGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGATGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTc                                       <  1:4554144/93‑1 (MQ=255)

                                                  catcatGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTc                                       <  1:1477082/93‑1 (MQ=255)

                                                   atcatGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCa                                      >  2:4288149/1‑93 (MQ=255)

                                                    tcatGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAg                                     >  2:3133462/1‑93 (MQ=255)

                                                    tcatGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAg                                     >  2:5960156/1‑93 (MQ=255)

                                                    tcatGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAg                                     <  2:4834521/93‑1 (MQ=255)

                                                     catGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGc                                    <  2:2139921/93‑1 (MQ=255)

                                                         gTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGta                                <  1:2184629/93‑1 (MQ=255)

                                                         gTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTAAGCCGta                                >  2:5290925/1‑93 (MQ=255)

                                                          tAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGtat                               >  1:2914960/1‑93 (MQ=255)

                                                           aaaTCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGtata                              <  1:2957697/93‑1 (MQ=255)

                                                           aaaTCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGtata                              <  2:856971/93‑1 (MQ=255)

                                                           aaaTCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGtata                              >  1:1401304/1‑93 (MQ=255)

                                                           aaaTCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGtata                              >  1:1069554/1‑93 (MQ=255)

                                                            aaTCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAg                             <  2:3887970/93‑1 (MQ=255)

                                                             aTCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAgg                            <  1:3691316/93‑1 (MQ=255)

                                                               taGTTATAGTTAATCTTAAAAAGCACCGCTGGATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGtt                          <  2:1289030/92‑1 (MQ=255)

                                                                aGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGTCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGttt                         >  1:3377858/1‑93 (MQ=255)

                                                                 gTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGtttt                        >  2:4870297/1‑93 (MQ=255)

                                                                 gTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGtttt                        <  2:1797060/93‑1 (MQ=255)

                                                                 gTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGtttt                        >  1:2382737/1‑93 (MQ=255)

                                                                  ttATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGttttt                       <  2:6120719/93‑1 (MQ=255)

                                                                   tataGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGtttttt                      <  1:4644350/93‑1 (MQ=255)

                                                                   tataGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGtttttt                      >  2:491255/1‑93 (MQ=255)

                                                                   tataGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGtttttt                      >  1:2647870/1‑93 (MQ=255)

                                                                   tataGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGtttttt                      >  2:5651760/1‑93 (MQ=255)

                                                                    ataGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTc                     >  2:5252713/1‑93 (MQ=255)

                                                                    ataGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTc                     <  2:5417873/93‑1 (MQ=255)

                                                                      aGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGt                   >  2:4097974/1‑93 (MQ=255)

                                                                          aaTCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGAc               >  2:79117/1‑93 (MQ=255)

                                                                             cTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCaa            >  2:5746033/1‑93 (MQ=255)

                                                                              ttAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAAc           <  1:6462345/93‑1 (MQ=255)

                                                                              ttAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAAc           >  1:2527065/1‑93 (MQ=255)

                                                                                 aaaaGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATg        >  1:281892/1‑93 (MQ=255)

                                                                                  aaaGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGt       >  2:4675010/1‑93 (MQ=255)

                                                                                   aaGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTc      >  1:5434422/1‑93 (MQ=255)

                                                                                   aaGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTc      >  1:4801061/1‑93 (MQ=255)

                                                                                   aaGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTc      >  2:2954412/1‑93 (MQ=255)

                                                                                   aaGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTc      <  2:2843429/93‑1 (MQ=255)

                                                                                    aGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCa     >  2:718233/1‑93 (MQ=255)

GGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACTG  >  NC_000913/747082‑747261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAGGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACTGGTG  >  NC_000913/747079‑747264

AAGGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCG                                                                                              >  SRR4302537.3368031/1‑94 (MQ=60)

AAGGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCG                                                                                              >  SRR4302537.4767589/1‑94 (MQ=60)

 AGGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGC                                                                                             >  SRR4302537.374428/1‑94 (MQ=60)

 AGGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGC                                                                                             >  SRR4302537.5371355/1‑94 (MQ=60)

  GGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCT                                                                                            >  SRR4302537.329853/1‑94 (MQ=60)

  GGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCT                                                                                            >  SRR4302537.1339953/1‑94 (MQ=60)

   GGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTG                                                                                           <  SRR4302537.3424514/94‑1 (MQ=60)

      AAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTAT                                                                                        <  SRR4302537.5196372/94‑1 (MQ=60)

       AAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATC                                                                                       >  SRR4302537.2649221/1‑94 (MQ=60)

         ATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGA                                                                                     >  SRR4302537.5227240/1‑94 (MQ=60)

         ATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGA                                                                                     >  SRR4302537.4186249/1‑94 (MQ=60)

         ATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGA                                                                                     >  SRR4302537.2722782/1‑94 (MQ=60)

         ATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGA                                                                                     >  SRR4302537.5142862/1‑94 (MQ=60)

           CAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAG                                                                                   <  SRR4302537.1105711/94‑1 (MQ=60)

           CAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAG                                                                                   >  SRR4302537.1827066/1‑94 (MQ=60)

           CAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAG                                                                                   >  SRR4302537.3097194/1‑94 (MQ=60)

            AGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGG                                                                                  >  SRR4302537.5697161/1‑94 (MQ=60)

            AGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGG                                                                                  >  SRR4302537.5011377/1‑94 (MQ=60)

            AGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGG                                                                                  >  SRR4302537.5876576/1‑94 (MQ=60)

             GCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGG                                                                                 <  SRR4302537.188509/94‑1 (MQ=60)

             GCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGG                                                                                 <  SRR4302537.3514196/94‑1 (MQ=60)

              CAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGG                                                                                <  SRR4302537.2137336/94‑1 (MQ=60)

               AATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGC                                                                               >  SRR4302537.3969549/1‑94 (MQ=60)

               AATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGC                                                                               >  SRR4302537.4373694/1‑94 (MQ=60)

                  TTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAG                                                                            >  SRR4302537.2460820/1‑94 (MQ=60)

                      TGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTC                                                                        <  SRR4302537.6272499/94‑1 (MQ=60)

                       GAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCG                                                                       >  SRR4302537.2219218/1‑94 (MQ=60)

                           GAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGG                                                                   <  SRR4302537.2785853/94‑1 (MQ=60)

                           GAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGG                                                                   <  SRR4302537.4481769/94‑1 (MQ=60)

                             GATGCCCTTTCCGGCGGCAAAGTGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGG                                                                 >  SRR4302537.5816187/1‑94 (MQ=60)

                              ATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGG                                                                >  SRR4302537.3877672/1‑94 (MQ=60)

                               TGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGT                                                               <  SRR4302537.3824359/94‑1 (MQ=60)

                                 CCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTTGATGGGGGTGC                                                             <  SRR4302537.5423357/94‑1 (MQ=60)

                                 CCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGC                                                             <  SRR4302537.5527048/94‑1 (MQ=60)

                                  CCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCC                                                            >  SRR4302537.793457/1‑94 (MQ=60)

                                   CTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCT                                                           >  SRR4302537.25645/1‑94 (MQ=60)

                                   CTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCT                                                           <  SRR4302537.6065831/94‑1 (MQ=60)

                                   CTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCT                                                           <  SRR4302537.4889231/94‑1 (MQ=60)

                                   CTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCT                                                           >  SRR4302537.5754180/1‑94 (MQ=60)

                                    TTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTG                                                          >  SRR4302537.3649499/1‑94 (MQ=60)

                                     TTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGG                                                         <  SRR4302537.1797664/94‑1 (MQ=60)

                                       CCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAA                                                       >  SRR4302537.5684472/1‑94 (MQ=60)

                                         GGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATG                                                     >  SRR4302537.2488167/1‑94 (MQ=60)

                                            GGCAAAGGGCATCATGGTACATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCAAGCCTCGATGGGGGTGCCTGGAATGGAC                                                  >  SRR4302537.1988358/1‑94 (MQ=60)

                                            GGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGAC                                                  <  SRR4302537.6125354/94‑1 (MQ=60)

                                            GGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGAC                                                  <  SRR4302537.5570819/94‑1 (MQ=60)

                                             GCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACG                                                 >  SRR4302537.5048157/1‑94 (MQ=60)

                                              CAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGA                                                >  SRR4302537.5888833/1‑94 (MQ=60)

                                              CAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGA                                                >  SRR4302537.3723729/1‑94 (MQ=60)

                                               AAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAA                                               >  SRR4302537.146412/1‑94 (MQ=60)

                                               AAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAA                                               <  SRR4302537.217748/94‑1 (MQ=60)

                                               AAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAA                                               <  SRR4302537.1843281/94‑1 (MQ=60)

                                                AAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAA                                              <  SRR4302537.464863/94‑1 (MQ=60)

                                                AAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAA                                              >  SRR4302537.6475752/1‑94 (MQ=60)

                                                 AGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAG                                             <  SRR4302537.1180486/94‑1 (MQ=60)

                                                 AGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACAAAAG                                             <  SRR4302537.404774/94‑1 (MQ=60)

                                                   GGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGTCCAGCCTCGATGGGGGGGCCTGGAATGGACGAAAGTT                                           >  SRR4302537.3725040/1‑94 (MQ=60)

                                                   GGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTT                                           >  SRR4302537.1572891/1‑94 (MQ=60)

                                                     CATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGATGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCA                                         <  SRR4302537.4585656/94‑1 (MQ=60)

                                                     CATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCA                                         <  SRR4302537.1487350/94‑1 (MQ=60)

                                                      ATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAG                                        >  SRR4302537.1104451/1‑94 (MQ=60)

                                                      ATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAG                                        >  SRR4302537.1641925/1‑94 (MQ=60)

                                                      ATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAG                                        >  SRR4302537.6322126/1‑94 (MQ=60)

                                                      ATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAG                                        <  SRR4302537.1537992/94‑1 (MQ=60)

                                                      ATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAG                                        >  SRR4302537.4853338/1‑94 (MQ=60)

                                                       TCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGC                                       <  SRR4302537.4804062/94‑1 (MQ=60)

                                                        CATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCC                                      >  SRR4302537.184085/1‑94 (MQ=60)

                                                         ATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCG                                     >  SRR4302537.6500160/1‑94 (MQ=60)

                                                         ATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCG                                     >  SRR4302537.2715885/1‑94 (MQ=60)

                                                         ATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCG                                     >  SRR4302537.6403683/1‑94 (MQ=60)

                                                          TGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGT                                    >  SRR4302537.4179815/1‑94 (MQ=60)

                                                            GTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTAT                                  >  SRR4302537.2935433/1‑94 (MQ=60)

                                                            GTAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTAT                                  <  SRR4302537.2200023/94‑1 (MQ=60)

                                                             TAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATA                                 >  SRR4302537.1076927/1‑94 (MQ=60)

                                                             TAAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATA                                 >  SRR4302537.1411068/1‑94 (MQ=60)

                                                              AAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAG                                <  SRR4302537.2978449/94‑1 (MQ=60)

                                                              AAATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAG                                <  SRR4302537.5435019/94‑1 (MQ=60)

                                                               AATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGG                               >  SRR4302537.5646377/1‑94 (MQ=60)

                                                                ATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGT                              <  SRR4302537.6050166/94‑1 (MQ=60)

                                                                ATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGT                              >  SRR4302537.322290/1‑94 (MQ=60)

                                                                ATCAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGT                              <  SRR4302537.3717288/94‑1 (MQ=60)

                                                                  CAGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGTCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTT                            >  SRR4302537.3401797/1‑94 (MQ=60)

                                                                   AGTTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTT                           >  SRR4302537.2399525/1‑94 (MQ=60)

                                                                     TTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTT                         >  SRR4302537.1140809/1‑94 (MQ=60)

                                                                     TTATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTT                         >  SRR4302537.2666388/1‑94 (MQ=60)

                                                                      TATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTC                        <  SRR4302537.4676466/94‑1 (MQ=60)

                                                                      TATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTC                        <  SRR4302537.2874618/94‑1 (MQ=60)

                                                                       ATAGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCG                       >  SRR4302537.4440941/1‑94 (MQ=60)

                                                                         AGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTA                     >  SRR4302537.3776218/1‑94 (MQ=60)

                                                                         AGTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTA                     >  SRR4302537.2409212/1‑94 (MQ=60)

                                                                          GTTAATCTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAG                    >  SRR4302537.5856718/1‑94 (MQ=60)

                                                                                CTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAAC              >  SRR4302537.2317556/1‑94 (MQ=60)

                                                                                CTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAAC              >  SRR4302537.3780578/1‑94 (MQ=60)

                                                                                CTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAAC              >  SRR4302537.3514849/1‑94 (MQ=60)

                                                                                CTTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAAC              >  SRR4302537.2544796/1‑94 (MQ=60)

                                                                                 TTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACA             <  SRR4302537.6506130/94‑1 (MQ=60)

                                                                                 TTAAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACA             >  SRR4302537.6102605/1‑94 (MQ=60)

                                                                                   AAAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATG           >  SRR4302537.283858/1‑94 (MQ=60)

                                                                                    AAAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGT          >  SRR4302537.1985426/1‑94 (MQ=60)

                                                                                     AAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTC         >  SRR4302537.5471491/1‑94 (MQ=60)

                                                                                     AAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTC         >  SRR4302537.338822/1‑94 (MQ=60)

                                                                                     AAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTC         >  SRR4302537.4834182/1‑94 (MQ=60)

                                                                                     AAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTC         <  SRR4302537.2947704/94‑1 (MQ=60)

                                                                                     AAAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTC         <  SRR4302537.6234612/94‑1 (MQ=60)

                                                                                      AAGCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCA        >  SRR4302537.4104353/1‑94 (MQ=60)

                                                                                       AGCACCGCTGTATCGAAAGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCAC       <  SRR4302537.4217372/94‑1 (MQ=60)

                                                                                        GCACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACT      <  SRR4302537.1995497/94‑1 (MQ=60)

                                                                                         CACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACTG     >  SRR4302537.1356780/1‑94 (MQ=60)

                                                                                         CACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACTG     <  SRR4302537.2794936/94‑1 (MQ=60)

                                                                                         CACCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACTG     <  SRR4302537.4008144/94‑1 (MQ=60)

                                                                                           CCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCGCTGGT   <  SRR4302537.175419/94‑1 (MQ=60)

                                                                                           CCGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACTGGT   <  SRR4302537.5253431/94‑1 (MQ=60)

                                                                                            CGCTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACTGGTG  <  SRR4302537.5812088/94‑1 (MQ=60)

AAGGGGAAAATCAGCAATTTTCTGAAAGAGATGCCCTTTCCGGCGGCAAAGGGCATCATGGTAAATCAGTTATAGTTAATCTTAAAAAGCACCACTGTATCGAAGGGGCCAGCCTCGATGGGGGTGCCTGGAATGGACGAAAGTTCAGCCGTATAGGTTTTTTCGTAGACCAACATGTCACTGGTG  >  NC_000913/747079‑747264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`