Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	926,255	A→G	V134A (GTC→GCC)	aat ←	leucyl, phenylalanyl‑tRNA‑protein transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	926,255	0	A	G	100.0%	718.7 / NA	205	V134A (GTC→GCC)	aat	leucyl, phenylalanyl‑tRNA‑protein transferase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (114/91); total (114/91)

Only 100 of 210 total aligned reads displayed.

TTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGACTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATCG  >  NC_000913/926165‑926344

ttttCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCt                                                                                         >  2:5398659/1‑93 (MQ=255)

 tttCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCtt                                                                                        >  2:1326041/1‑93 (MQ=255)

  ttCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTc                                                                                       >  1:1434101/1‑93 (MQ=255)

   tCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCa                                                                                      >  2:2688847/1‑93 (MQ=255)

    ccATCCGGCTGAACATGGACTCGCCTCAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCaa                                                                                     >  2:6257635/1‑93 (MQ=255)

     cATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAAt                                                                                    <  1:3701773/93‑1 (MQ=255)

     cATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAAt                                                                                    >  2:5156923/1‑93 (MQ=255)

     cATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAAt                                                                                    <  1:4522997/93‑1 (MQ=255)

       tCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATgg                                                                                  >  1:3388314/1‑93 (MQ=255)

       tCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATgg                                                                                  >  1:5088784/1‑93 (MQ=255)

        ccGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGa                                                                                 <  1:4044383/93‑1 (MQ=255)

         cGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAg                                                                                <  2:2967197/93‑1 (MQ=255)

         cGGCTGAACATGGACTCGCCACAAAATAGCGATCCCTGGGCGACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAg                                                                                >  1:3850267/1‑93 (MQ=255)

          ggCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGt                                                                               <  1:2141421/93‑1 (MQ=255)

          ggCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGt                                                                               <  1:328685/93‑1 (MQ=255)

           gCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTg                                                                              >  1:1780569/1‑93 (MQ=255)

            cTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGTCCACGCCGTACATAACGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTgg                                                                             >  1:2914294/1‑93 (MQ=255)

            cTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTgg                                                                             <  1:3718675/93‑1 (MQ=255)

             tGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTggg                                                                            >  2:1947494/1‑93 (MQ=255)

                aCATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCAt                                                                         <  1:2351846/93‑1 (MQ=255)

                aCATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCAt                                                                         >  2:720813/1‑93 (MQ=255)

                 cATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATg                                                                        >  2:5414296/1‑93 (MQ=255)

                 cATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATg                                                                        <  1:1943716/93‑1 (MQ=255)

                   tGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGc                                                                      <  2:4168782/93‑1 (MQ=255)

                   tGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGc                                                                      >  1:4447254/1‑93 (MQ=255)

                     gACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCg                                                                    >  2:6039878/1‑93 (MQ=255)

                     gACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCg                                                                    >  2:1844357/1‑93 (MQ=255)

                      aCTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGa                                                                   >  2:4029025/1‑93 (MQ=255)

                      aCTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGa                                                                   >  2:1836047/1‑93 (MQ=255)

                       cTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAg                                                                  <  2:5451930/93‑1 (MQ=255)

                        tCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGt                                                                 >  1:4654590/1‑93 (MQ=255)

                        tCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGt                                                                 <  1:246291/93‑1 (MQ=255)

                        ccGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGt                                                                 <  2:877924/92‑1 (MQ=255)

                         cGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGtt                                                                <  2:621545/93‑1 (MQ=255)

                         cGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGtt                                                                <  2:253580/93‑1 (MQ=255)

                           ccccaAAATAGCGTCCCCTGGGCCACGCCGTACATACCGCAGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCg                                                              <  2:167689/90‑1 (MQ=255)

                           ccACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCg                                                              >  2:3124496/1‑93 (MQ=255)

                           ccACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCg                                                              <  1:5983083/93‑1 (MQ=255)

                            cacaAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGt                                                             >  1:2312264/1‑93 (MQ=255)

                            cacaAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGt                                                             >  1:6068979/1‑93 (MQ=255)

                             acaAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTg                                                            >  2:1146700/1‑93 (MQ=255)

                              caAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGa                                                           <  1:6457863/93‑1 (MQ=255)

                               aaaaTAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGaa                                                          <  1:4948098/93‑1 (MQ=255)

                               aaaaTAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGaa                                                          >  2:3972444/1‑93 (MQ=255)

                                aaaTAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAg                                                         <  1:6212333/93‑1 (MQ=255)

                                aaaTAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAg                                                         >  1:5194870/1‑93 (MQ=255)

                                aaaTAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAg                                                         >  2:2373621/1‑93 (MQ=255)

                                aaaTAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAg                                                         <  1:2822496/93‑1 (MQ=255)

                                  aTAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGc                                                       <  2:3912093/93‑1 (MQ=255)

                                   tAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCg                                                      >  1:6294360/1‑93 (MQ=255)

                                     gCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGAt                                                    <  2:2471367/93‑1 (MQ=255)

                                     gCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGAt                                                    <  2:6318020/93‑1 (MQ=255)

                                     ccGTTCCCTGGCCCACGCCATAAATACCGCCGACAAGCACATCTTCACGCCGGGTTTCAATGGAGTGGGCCTGGCCAAGTTCTTGAGGCCGAt                                                    <  2:5666230/92‑1 (MQ=255)

                                        ttCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGt                                                 >  2:1435088/1‑93 (MQ=255)

                                        ttCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGt                                                 >  2:6435001/1‑93 (MQ=255)

                                         tCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTa                                                <  1:1851124/93‑1 (MQ=255)

                                         tCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTa                                                >  2:4258260/1‑93 (MQ=255)

                                         tCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTa                                                <  1:1032065/93‑1 (MQ=255)

                                          cccTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAg                                               <  2:1233008/93‑1 (MQ=255)

                                          cccTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAg                                               <  1:5748923/93‑1 (MQ=255)

                                           ccTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAgg                                              >  2:1591849/1‑93 (MQ=255)

                                           ccTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAgg                                              <  2:6104939/93‑1 (MQ=255)

                                           ccTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAgg                                              >  2:202817/1‑93 (MQ=255)

                                             tGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCt                                            <  1:138770/93‑1 (MQ=255)

                                             tGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCt                                            >  2:1034358/1‑93 (MQ=255)

                                              gggCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCtt                                           <  1:3100672/93‑1 (MQ=255)

                                               ggCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTc                                          >  2:4729965/1‑93 (MQ=255)

                                               ggCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTc                                          >  2:3603008/1‑93 (MQ=255)

                                                gCCACGCCGTACATTCCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCg                                         <  1:4885051/93‑1 (MQ=255)

                                                gCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCg                                         >  2:3468256/1‑93 (MQ=255)

                                                gCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCg                                         >  1:5871943/1‑93 (MQ=255)

                                                  cACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGAc                                       <  1:1740831/93‑1 (MQ=255)

                                                  cACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGAc                                       >  1:1269385/1‑93 (MQ=255)

                                                   cccccGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGCCGATGGTAGGCTTCGAcc                                      <  1:2866710/90‑1 (MQ=255)

                                                   aCGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTATGCTTCGAcc                                      >  1:806673/1‑93 (MQ=255)

                                                   aCGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGAcc                                      >  1:5639830/1‑93 (MQ=255)

                                                     gCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGAccac                                    >  2:2384160/1‑93 (MQ=255)

                                                       cGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGGAGGCTTCGAccacgc                                  >  2:2857232/1‑93 (MQ=255)

                                                          aCATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGAccacgccac                               >  1:5626857/1‑93 (MQ=255)

                                                               ccgccgACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTg                          >  2:1825332/1‑93 (MQ=255)

                                                                 gccgACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGAt                        <  1:1712985/93‑1 (MQ=255)

                                                                   cgACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATcc                      <  1:193166/93‑1 (MQ=255)

                                                                    gACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCa                     >  2:4557459/1‑93 (MQ=255)

                                                                    gACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCa                     >  1:2670055/1‑93 (MQ=255)

                                                                     aCAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAg                    <  1:2239177/93‑1 (MQ=255)

                                                                      cAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAgg                   <  2:3749826/93‑1 (MQ=255)

                                                                        aGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGtt                 >  2:4513875/1‑93 (MQ=255)

                                                                         gCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTc                >  1:2600320/1‑93 (MQ=255)

                                                                            cATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCctt             >  1:1604078/1‑93 (MQ=255)

                                                                            cATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCctt             >  1:941513/1‑93 (MQ=255)

                                                                             aTCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCcttc            >  2:5564138/1‑93 (MQ=255)

                                                                              tCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCcttct           >  1:1204601/1‑93 (MQ=255)

                                                                              tCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCcttct           <  1:3557077/93‑1 (MQ=255)

                                                                              tCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCcttct           <  1:5044225/93‑1 (MQ=255)

                                                                               cTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGGTCcgtctt          >  1:2247534/1‑93 (MQ=255)

                                                                                ttCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCttcttc         >  2:2099473/1‑93 (MQ=255)

                                                                                  cACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTcgc       >  1:899780/1‑93 (MQ=255)

                                                                                     gCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGAt    <  1:4818793/93‑1 (MQ=255)

                                                                                     gCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGAt    <  1:2212692/93‑1 (MQ=255)

                                                                                      ccAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATc   <  2:5229327/93‑1 (MQ=255)

TTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGACTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATCG  >  NC_000913/926165‑926344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGACTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATCGCTGG  >  NC_000913/926163‑926348

CATTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGC                                                                                              >  SRR4302537.3620240/1‑94 (MQ=60)

CATTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGC                                                                                              <  SRR4302537.5496212/94‑1 (MQ=60)

 ATTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCT                                                                                             <  SRR4302537.6449362/94‑1 (MQ=60)

 ATTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCT                                                                                             >  SRR4302537.2536502/1‑94 (MQ=60)

 ATTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCT                                                                                             <  SRR4302537.6061253/94‑1 (MQ=60)

 ATTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCT                                                                                             >  SRR4302537.4858232/1‑94 (MQ=60)

  TTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTT                                                                                            <  SRR4302537.1621689/94‑1 (MQ=60)

   TTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTC                                                                                           <  SRR4302537.2411185/94‑1 (MQ=60)

   TTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTC                                                                                           >  SRR4302537.1444076/1‑94 (MQ=60)

     TCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAA                                                                                         <  SRR4302537.4941604/94‑1 (MQ=60)

      CCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAAT                                                                                        <  SRR4302537.6495215/94‑1 (MQ=60)

       CATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATG                                                                                       <  SRR4302537.4554290/94‑1 (MQ=60)

       CATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATG                                                                                       <  SRR4302537.3727812/94‑1 (MQ=60)

       CATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATG                                                                                       >  SRR4302537.1876564/1‑94 (MQ=60)

        ATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGG                                                                                      >  SRR4302537.5123816/1‑94 (MQ=60)

        ATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGG                                                                                      >  SRR4302537.3412314/1‑94 (MQ=60)

        ATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGG                                                                                      <  SRR4302537.3167089/94‑1 (MQ=60)

        ATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGG                                                                                      >  SRR4302537.2159398/1‑94 (MQ=60)

        ATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGA                                                                                      >  SRR4302537.632869/1‑94 (MQ=60)

         TCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGA                                                                                     <  SRR4302537.1160931/94‑1 (MQ=60)

          CCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAG                                                                                    <  SRR4302537.4072664/94‑1 (MQ=60)

          CCGGCTGAACATGGACTCGCCACAAAATAGCGATCCCTGGGCGACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAG                                                                                    >  SRR4302537.3877230/1‑94 (MQ=60)

            GGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTG                                                                                  >  SRR4302537.1792977/1‑94 (MQ=60)

            GGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTG                                                                                  <  SRR4302537.330965/94‑1 (MQ=60)

            GGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTG                                                                                  <  SRR4302537.2156492/94‑1 (MQ=60)

             GCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGTCCACGCCGTACATAACGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGG                                                                                 >  SRR4302537.2934763/1‑94 (MQ=60)

              CTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGG                                                                                >  SRR4302537.1737288/1‑94 (MQ=60)

              CTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGG                                                                                <  SRR4302537.3744810/94‑1 (MQ=60)

              CTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGG                                                                                >  SRR4302537.1915226/1‑94 (MQ=60)

                GAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCA                                                                              >  SRR4302537.912253/1‑94 (MQ=60)

                 AACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCAT                                                                             <  SRR4302537.1788873/94‑1 (MQ=60)

                  ACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATG                                                                            <  SRR4302537.2368405/94‑1 (MQ=60)

                  ACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATG                                                                            <  SRR4302537.5087539/94‑1 (MQ=60)

                   CATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGG                                                                           <  SRR4302537.4615489/94‑1 (MQ=60)

                   CATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGG                                                                           <  SRR4302537.1957229/94‑1 (MQ=60)

                    ATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGC                                                                          >  SRR4302537.4477966/1‑94 (MQ=60)

                    ATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGC                                                                          >  SRR4302537.4477965/1‑94 (MQ=60)

                    ATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGC                                                                          >  SRR4302537.3493347/1‑94 (MQ=60)

                     TGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCC                                                                         <  SRR4302537.5024034/94‑1 (MQ=60)

                      GGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCG                                                                        >  SRR4302537.1951899/1‑94 (MQ=60)

                         CTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGT                                                                     >  SRR4302537.4686777/1‑94 (MQ=60)

                          TCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTT                                                                    <  SRR4302537.248037/94‑1 (MQ=60)

                           CGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTC                                                                   <  SRR4302537.5712973/94‑1 (MQ=60)

                           CGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTC                                                                   <  SRR4302537.904364/94‑1 (MQ=60)

                             CCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGT                                                                 >  SRR4302537.6110676/1‑94 (MQ=60)

                             CCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGT                                                                 <  SRR4302537.6024150/94‑1 (MQ=60)

                             CCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGT                                                                 >  SRR4302537.2328587/1‑94 (MQ=60)

                               ACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGA                                                               >  SRR4302537.3388752/1‑94 (MQ=60)

                                CAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAA                                                              <  SRR4302537.3010276/94‑1 (MQ=60)

                                CAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAA                                                              >  SRR4302537.379769/1‑94 (MQ=60)

                                CAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAA                                                              <  SRR4302537.6501631/94‑1 (MQ=60)

                                 AAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAG                                                             >  SRR4302537.5230584/1‑94 (MQ=60)

                                 AAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAG                                                             <  SRR4302537.4982210/94‑1 (MQ=60)

                                  AAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGG                                                            <  SRR4302537.6255124/94‑1 (MQ=60)

                                  AAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGG                                                            <  SRR4302537.2842225/94‑1 (MQ=60)

                                    ATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCG                                                          >  SRR4302537.6337483/1‑94 (MQ=60)

                                    ATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCG                                                          <  SRR4302537.2724784/94‑1 (MQ=60)

                                      AGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGAT                                                        <  SRR4302537.1215089/94‑1 (MQ=60)

                                      AGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGAT                                                        >  SRR4302537.2155004/1‑94 (MQ=60)

                                           TCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAG                                                   <  SRR4302537.1039175/94‑1 (MQ=60)

                                           TCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAG                                                   <  SRR4302537.4812091/94‑1 (MQ=60)

                                           TCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAG                                                   <  SRR4302537.157658/94‑1 (MQ=60)

                                           TCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAG                                                   <  SRR4302537.1863999/94‑1 (MQ=60)

                                            CCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGG                                                  <  SRR4302537.5788299/94‑1 (MQ=60)

                                            CCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGG                                                  >  SRR4302537.2353375/1‑94 (MQ=60)

                                             CCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGC                                                 >  SRR4302537.4266964/1‑94 (MQ=60)

                                               TGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTT                                               >  SRR4302537.516463/1‑94 (MQ=60)

                                               TGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTT                                               <  SRR4302537.139762/94‑1 (MQ=60)

                                                GGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTC                                              <  SRR4302537.3122316/94‑1 (MQ=60)

                                                GGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTC                                              <  SRR4302537.2630401/94‑1 (MQ=60)

                                                 GGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCG                                             >  SRR4302537.5912222/1‑94 (MQ=60)

                                                 GGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCG                                             <  SRR4302537.5936215/94‑1 (MQ=60)

                                                 GGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCG                                             <  SRR4302537.2255618/94‑1 (MQ=60)

                                                  GCCACGCCGTACATTCCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGA                                            <  SRR4302537.4918786/94‑1 (MQ=60)

                                                   CCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGAC                                           >  SRR4302537.1278216/1‑94 (MQ=60)

                                                    CACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTATGCTTCGACC                                          >  SRR4302537.812208/1‑94 (MQ=60)

                                                    CACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACC                                          >  SRR4302537.5678425/1‑94 (MQ=60)

                                                    CACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACC                                          <  SRR4302537.1752964/94‑1 (MQ=60)

                                                     cccCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGCCGATGGTAGGCTTCGACCA                                         <  SRR4302537.2886821/91‑1 (MQ=60)

                                                        CCGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGC                                      >  SRR4302537.100288/1‑94 (MQ=60)

                                                         CGTACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCC                                     <  SRR4302537.761790/94‑1 (MQ=60)

                                                           TACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCAC                                   >  SRR4302537.1288276/1‑94 (MQ=60)

                                                           TACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCAC                                   >  SRR4302537.5665351/1‑94 (MQ=60)

                                                            ACATACCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACG                                  <  SRR4302537.2631229/94‑1 (MQ=60)

                                                                 CCGCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGA                             >  SRR4302537.3779108/1‑94 (MQ=60)

                                                                   GCCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATC                           <  SRR4302537.1724945/94‑1 (MQ=60)

                                                                    CCGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCC                          >  SRR4302537.226520/1‑94 (MQ=60)

                                                                     CGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCA                         >  SRR4302537.6028963/1‑94 (MQ=60)

                                                                     CGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCA                         >  SRR4302537.2688711/1‑94 (MQ=60)

                                                                     CGACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCA                         <  SRR4302537.194538/94‑1 (MQ=60)

                                                                       ACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGG                       >  SRR4302537.67220/1‑94 (MQ=60)

                                                                       ACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGG                       <  SRR4302537.363269/94‑1 (MQ=60)

                                                                       ACAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGG                       <  SRR4302537.2254965/94‑1 (MQ=60)

                                                                        CAAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGT                      >  SRR4302537.2252954/1‑94 (MQ=60)

                                                                         AAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTT                     <  SRR4302537.5562533/94‑1 (MQ=60)

                                                                         AAGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTT                     <  SRR4302537.5852873/94‑1 (MQ=60)

                                                                          AGCTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTC                    >  SRR4302537.2618504/1‑94 (MQ=60)

                                                                            CTCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCT                  >  SRR4302537.5674342/1‑94 (MQ=60)

                                                                             TCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTT                 >  SRR4302537.948006/1‑94 (MQ=60)

                                                                             TCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTT                 >  SRR4302537.1615295/1‑94 (MQ=60)

                                                                             TCATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTT                 >  SRR4302537.3735751/1‑94 (MQ=60)

                                                                               ATCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCT               >  SRR4302537.1212981/1‑94 (MQ=60)

                                                                                TCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTT              <  SRR4302537.5078965/94‑1 (MQ=60)

                                                                                TCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTT              <  SRR4302537.3582179/94‑1 (MQ=60)

                                                                                TCTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGGTCCGTCTT              >  SRR4302537.2263394/1‑94 (MQ=60)

                                                                                 CTTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTC             <  SRR4302537.4063011/94‑1 (MQ=60)

                                                                                  TTCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGCGATCCAGGTTCCTTCTTCG            >  SRR4302537.1818118/1‑94 (MQ=60)

                                                                                   TCACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGC           >  SRR4302537.905983/1‑94 (MQ=60)

                                                                                    CACGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCG          <  SRR4302537.2870546/94‑1 (MQ=60)

                                                                                      CGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGAT        <  SRR4302537.6116201/94‑1 (MQ=60)

                                                                                      CGCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGAT        >  SRR4302537.141298/1‑94 (MQ=60)

                                                                                       GCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATC       >  SRR4302537.2914784/1‑94 (MQ=60)

                                                                                       GCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATC       <  SRR4302537.2228295/94‑1 (MQ=60)

                                                                                       GCCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATC       <  SRR4302537.4852065/94‑1 (MQ=60)

                                                                                        CCAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTACTTCTTCGCGATCG      >  SRR4302537.5126625/1‑94 (MQ=60)

                                                                                         CAGGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATCGC     >  SRR4302537.3819599/1‑94 (MQ=60)

                                                                                           GGCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATCGCTG   >  SRR4302537.4114564/1‑94 (MQ=60)

                                                                                            GCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATCGCTGG  <  SRR4302537.2977023/94‑1 (MQ=60)

                                                                                            GCTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATCGCTGG  >  SRR4302537.2605903/1‑94 (MQ=60)

CATTTTCCATCCGGCTGAACATGGACTCGCCACAAAATAGCGTTCCCTGGGCCACGCCGTACATACCGCCGACAAGCTCATCTTCACGCCAGACTTCAATGGAGTGGGCATGGCCGAGTTCGTGAAGGCGATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATCGCTGG  >  NC_000913/926163‑926348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`