Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	967,279	T→C	V479A (GTG→GCG)	msbA →	ATP‑binding transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	967,279	0	T	C	100.0%	578.4 / NA	168	V479A (GTG→GCG)	msbA	ATP‑binding transport protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (83/85); total (83/85)

Only 100 of 183 total aligned reads displayed.

AAATTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGTGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCT  >  NC_000913/967189‑967368

aaaTTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGgcgcgc                                                                                         <  2:5858372/93‑1 (MQ=255)

aaaTTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGgcgcgc                                                                                         >  2:305280/1‑93 (MQ=255)

 aaTTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGcgct                                                                                        >  1:2068435/1‑93 (MQ=255)

 aaTTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGcgct                                                                                        >  2:2107023/1‑93 (MQ=255)

  aTTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGcgctg                                                                                       >  1:5835815/1‑93 (MQ=255)

        gaagCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGctctct                                                                                 >  2:6199956/1‑93 (MQ=255)

        gaagCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGctctct                                                                                 <  2:128959/93‑1 (MQ=255)

        gaagCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGctctct                                                                                 <  2:214837/93‑1 (MQ=255)

            cggcgCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCg                                                                             <  2:14210/93‑1 (MQ=255)

               cgcgTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtc                                                                          <  2:832107/93‑1 (MQ=255)

               cgcgTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtc                                                                          <  1:5769832/93‑1 (MQ=255)

               cgcgTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtc                                                                          >  1:944991/1‑93 (MQ=255)

               cgcgTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtc                                                                          <  2:5570043/93‑1 (MQ=255)

               cgcgTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtc                                                                          >  1:1354473/1‑93 (MQ=255)

                gcgTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtca                                                                         >  1:2381313/1‑93 (MQ=255)

                  gTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtcagc                                                                       >  1:545022/1‑93 (MQ=255)

                  gTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtcagc                                                                       >  2:129882/1‑93 (MQ=255)

                   tATGGCCTACGCCATGGACTTAATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtcagcg                                                                      >  1:4392541/1‑93 (MQ=255)

                    aTGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtcagcgt                                                                     <  1:4802007/93‑1 (MQ=255)

                     tGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtcagcgtc                                                                    <  1:5922688/93‑1 (MQ=255)

                      ggCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtcagcgtca                                                                   >  2:4653763/1‑93 (MQ=255)

                        ccTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGgtcagcgtcagc                                                                 >  2:4039127/1‑93 (MQ=255)

                         cTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGtcagcgtcagcg                                                                <  1:951090/93‑1 (MQ=255)

                          tACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTcagcgtcagcgt                                                               >  2:3165115/1‑93 (MQ=255)

                          tACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTcagcgtcagcgt                                                               >  2:4336915/1‑93 (MQ=255)

                          tACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTcagcgtcagcgt                                                               >  1:1560286/1‑93 (MQ=255)

                           aCGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTa                                                              <  2:4731798/93‑1 (MQ=255)

                           aCGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTa                                                              <  2:4024290/93‑1 (MQ=255)

                            cGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTAt                                                             >  2:4545252/1‑93 (MQ=255)

                            cGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTAt                                                             <  2:712986/93‑1 (MQ=255)

                            cGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTAt                                                             <  1:3316058/93‑1 (MQ=255)

                             gCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTAtt                                                            <  1:141890/93‑1 (MQ=255)

                              ccATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTg                                                           >  2:815170/1‑93 (MQ=255)

                                aTGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCt                                                         >  1:3180849/1‑93 (MQ=255)

                                 tGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTa                                                        <  2:3763426/93‑1 (MQ=255)

                                   gACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATc                                                      >  2:3111967/1‑93 (MQ=255)

                                    aCTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCg                                                     >  2:3535800/1‑93 (MQ=255)

                                     cTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGc                                                    <  1:3633012/93‑1 (MQ=255)

                                      ttCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCt                                                   <  1:5396795/93‑1 (MQ=255)

                                      ttCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCt                                                   >  1:1054598/1‑93 (MQ=255)

                                      ttCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCt                                                   <  1:3931521/93‑1 (MQ=255)

                                      ttCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCt                                                   >  1:5949785/1‑93 (MQ=255)

                                      ttCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCt                                                   >  1:1970757/1‑93 (MQ=255)

                                       tcatcaATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTc                                                  <  1:5295410/93‑1 (MQ=255)

                                       tcatcaATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTc                                                  >  2:6416338/1‑93 (MQ=255)

                                        catcaATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCg                                                 >  2:1662440/1‑93 (MQ=255)

                                          tcaATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAg                                               >  1:4734671/1‑93 (MQ=255)

                                            aaTAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGcc                                             <  2:3595882/93‑1 (MQ=255)

                                            aaTAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGcc                                             <  2:10869/93‑1 (MQ=255)

                                                agagGGATAACGGTCTCGATACAGTGATGGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCttgt                                         <  1:4146500/93‑1 (MQ=255)

                                                aGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCttgt                                         >  2:78456/1‑93 (MQ=255)

                                                aGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCttgt                                         <  1:1854307/93‑1 (MQ=255)

                                                aGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCttgt                                         >  1:3388922/1‑93 (MQ=255)

                                                aGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCttgt                                         <  2:3878210/93‑1 (MQ=255)

                                                 gATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCttgtt                                        >  1:2410451/1‑93 (MQ=255)

                                                 gATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCttgtt                                        >  2:3784948/1‑93 (MQ=255)

                                                   tGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGc                                      >  2:4875269/1‑93 (MQ=255)

                                                    ggATACCGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCg                                     <  1:3983536/93‑1 (MQ=255)

                                                    ggATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCg                                     <  2:5231296/93‑1 (MQ=255)

                                                    ggATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCg                                     >  2:1754517/1‑93 (MQ=255)

                                                     gATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGt                                    >  1:6355265/1‑93 (MQ=255)

                                                       tAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGa                                  <  1:3698971/93‑1 (MQ=255)

                                                       tAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGa                                  >  2:2799776/1‑93 (MQ=255)

                                                        aaCGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGAt                                 <  1:2462788/93‑1 (MQ=255)

                                                        aaCGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGAt                                 <  2:391675/93‑1 (MQ=255)

                                                         aCGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATa                                >  2:235315/1‑93 (MQ=255)

                                                         aCGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATa                                <  1:2609623/93‑1 (MQ=255)

                                                          cGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAg                               <  2:5215713/93‑1 (MQ=255)

                                                           ggTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGc                              <  1:4727431/93‑1 (MQ=255)

                                                            gTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGcc                             <  1:3801103/93‑1 (MQ=255)

                                                             tctcGATACAGTGATTGGTGAAAGCGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGccc                            <  1:80239/93‑1 (MQ=255)

                                                             tctcGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCTGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGccc                            >  1:2561441/1‑93 (MQ=255)

                                                             tctcGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGccc                            <  1:5033796/93‑1 (MQ=255)

                                                               tcGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGNGCCTTGTTGCGTGATAGCCCga                          >  1:5906365/1‑93 (MQ=255)

                                                               tcGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCga                          >  2:3687926/1‑93 (MQ=255)

                                                               tcGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCga                          <  1:957245/93‑1 (MQ=255)

                                                                   tACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCgattct                      >  2:1803348/1‑93 (MQ=255)

                                                                   tACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCgattct                      <  1:6058786/93‑1 (MQ=255)

                                                                   tACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCgattct                      >  1:5691010/1‑93 (MQ=255)

                                                                     cAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCgattctga                    >  2:5402454/1‑93 (MQ=255)

                                                                        tGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCgattctgattc                 <  1:391175/93‑1 (MQ=255)

                                                                        tGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCgattctgattc                 <  1:2154673/93‑1 (MQ=255)

                                                                         gATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCgattctgattct                >  2:2951161/1‑93 (MQ=255)

                                                                         gATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCgattctgattct                >  2:5337775/1‑93 (MQ=255)

                                                                          gttGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGattctgattctg               <  1:230920/92‑1 (MQ=255)

                                                                           ttGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTgg              <  2:6011861/93‑1 (MQ=255)

                                                                           ttGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTgg              <  2:3905202/93‑1 (MQ=255)

                                                                            tGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGa             <  1:6314074/93‑1 (MQ=255)

                                                                             ggTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGAc            <  1:4881108/93‑1 (MQ=255)

                                                                             ggTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGAc            >  2:1829931/1‑93 (MQ=255)

                                                                                gAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGaa         <  2:4610193/93‑1 (MQ=255)

                                                                                  aaaCGCCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGc       <  2:4496250/93‑1 (MQ=255)

                                                                                   aaCGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCt      >  1:2895825/1‑93 (MQ=255)

                                                                                   aaCGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCt      <  2:1164278/93‑1 (MQ=255)

                                                                                   aaCGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCt      >  2:1488488/1‑93 (MQ=255)

                                                                                    aCGGTGCGCGGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTAGCGGTCGACCCTTGTTGCGTGATAGCCCGATTCTGATACTGGACGAAGCTa     <  2:940484/93‑1 (MQ=255)

                                                                                    aCGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTa     <  1:466504/93‑1 (MQ=255)

                                                                                    aCGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTa     <  1:2736068/93‑1 (MQ=255)

                                                                                       gcgcgcTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCt  <  2:2956918/93‑1 (MQ=255)

                                                                                       gcgcgcTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCt  <  1:1113002/93‑1 (MQ=255)

AAATTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGTGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCT  >  NC_000913/967189‑967368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCAAATTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGTGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGC  >  NC_000913/967187‑967372

GCAAATTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCG                                                                                              <  SRR4302537.337506/94‑1 (MQ=60)

GCAAATTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCG                                                                                              <  SRR4302537.6104124/94‑1 (MQ=60)

 CAAATTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCACCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGC                                                                                             >  SRR4302537.4582170/1‑94 (MQ=60)

  AAATTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCT                                                                                            >  SRR4302537.2082969/1‑94 (MQ=60)

   AATTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTG                                                                                           >  SRR4302537.5875811/1‑94 (MQ=60)

     TTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCT                                                                                         >  SRR4302537.2014259/1‑94 (MQ=60)

          GAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTG                                                                                    <  SRR4302537.2671532/94‑1 (MQ=60)

           AAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGG                                                                                   >  SRR4302537.1422685/1‑94 (MQ=60)

             GCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCG                                                                                 <  SRR4302537.2756259/94‑1 (MQ=60)

                GCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTC                                                                              >  SRR4302537.951524/1‑94 (MQ=60)

                GCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTC                                                                              >  SRR4302537.1363913/1‑94 (MQ=60)

                 CGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCA                                                                             <  SRR4302537.5809379/94‑1 (MQ=60)

                 CGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCA                                                                             >  SRR4302537.2398096/1‑94 (MQ=60)

                 CGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCA                                                                             <  SRR4302537.2405173/94‑1 (MQ=60)

                   CGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGC                                                                           >  SRR4302537.548767/1‑94 (MQ=60)

                    GTATGGCCTACGCCATGGACTTAATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCG                                                                          >  SRR4302537.4422849/1‑94 (MQ=60)

                      ATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTC                                                                        <  SRR4302537.4835135/94‑1 (MQ=60)

                       TGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCA                                                                       <  SRR4302537.5963326/94‑1 (MQ=60)

                           CTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGT                                                                   >  SRR4302537.1571173/1‑94 (MQ=60)

                           CTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGT                                                                   <  SRR4302537.957667/94‑1 (MQ=60)

                             ACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTAT                                                                 <  SRR4302537.5787600/94‑1 (MQ=60)

                             ACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTAT                                                                 >  SRR4302537.5680612/1‑94 (MQ=60)

                              CGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATT                                                                <  SRR4302537.1696378/94‑1 (MQ=60)

                              CGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATT                                                                <  SRR4302537.3339514/94‑1 (MQ=60)

                              CGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATT                                                                <  SRR4302537.2146856/94‑1 (MQ=60)

                               GCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTG                                                               <  SRR4302537.142897/94‑1 (MQ=60)

                               GCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTG                                                               >  SRR4302537.1145499/1‑94 (MQ=60)

                                 CATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCT                                                             >  SRR4302537.3203205/1‑94 (MQ=60)

                                 CATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCT                                                             >  SRR4302537.3702712/1‑94 (MQ=60)

                                     GACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCG                                                         <  SRR4302537.4970248/94‑1 (MQ=60)

                                       CTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCT                                                       <  SRR4302537.3658609/94‑1 (MQ=60)

                                       CTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCT                                                       >  SRR4302537.1061874/1‑94 (MQ=60)

                                       CTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCT                                                       >  SRR4302537.1984460/1‑94 (MQ=60)

                                       CTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCT                                                       >  SRR4302537.5990627/1‑94 (MQ=60)

                                        TTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTC                                                      <  SRR4302537.5433643/94‑1 (MQ=60)

                                        TTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTC                                                      <  SRR4302537.917108/94‑1 (MQ=60)

                                        TTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTC                                                      <  SRR4302537.3958991/94‑1 (MQ=60)

                                         TCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCG                                                     <  SRR4302537.5331794/94‑1 (MQ=60)

                                         TCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCG                                                     >  SRR4302537.5962061/1‑94 (MQ=60)

                                          CATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGA                                                    <  SRR4302537.5890481/94‑1 (MQ=60)

                                           ATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAG                                                   >  SRR4302537.4767387/1‑94 (MQ=60)

                                              AATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCT                                                >  SRR4302537.4907433/1‑94 (MQ=60)

                                              AATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCT                                                <  SRR4302537.3894632/94‑1 (MQ=60)

                                              AATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCT                                                >  SRR4302537.3365597/1‑94 (MQ=60)

                                                 AAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGT                                             >  SRR4302537.3412927/1‑94 (MQ=60)

                                                  AGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTT                                            >  SRR4302537.2427426/1‑94 (MQ=60)

                                                  AGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTT                                            >  SRR4302537.3789530/1‑94 (MQ=60)

                                                  AGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTT                                            <  SRR4302537.1867201/94‑1 (MQ=60)

                                                  AGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTT                                            <  SRR4302537.4344993/94‑1 (MQ=60)

                                                  AGAGGGATAACGGTCTCGATACAGTGATGGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTT                                            <  SRR4302537.4175435/94‑1 (MQ=60)

                                                    ATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGC                                          <  SRR4302537.2993213/94‑1 (MQ=60)

                                                    ATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGC                                          >  SRR4302537.3962385/1‑94 (MQ=60)

                                                     TGGATAACGGTCTCGATAGAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCG                                         <  SRR4302537.234692/94‑1 (MQ=60)

                                                      GGATACCGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGT                                        <  SRR4302537.4011426/94‑1 (MQ=60)

                                                      GGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGT                                        >  SRR4302537.6398645/1‑94 (MQ=60)

                                                        ATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGA                                      >  SRR4302537.6075157/1‑94 (MQ=60)

                                                         TAACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGAT                                     <  SRR4302537.3724998/94‑1 (MQ=60)

                                                          AACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATA                                    <  SRR4302537.2480106/94‑1 (MQ=60)

                                                           ACGGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAG                                   <  SRR4302537.2627878/94‑1 (MQ=60)

                                                             GGTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCC                                 <  SRR4302537.4760107/94‑1 (MQ=60)

                                                              GTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCTGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCC                                >  SRR4302537.2579384/1‑94 (MQ=60)

                                                              GTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCC                                >  SRR4302537.958222/1‑94 (MQ=60)

                                                              GTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCC                                >  SRR4302537.5420992/1‑94 (MQ=60)

                                                              GTCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCC                                <  SRR4302537.3827773/94‑1 (MQ=60)

                                                               TCTCGATACAGTGATTGGTGAAAGCGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCG                               <  SRR4302537.80827/94‑1 (MQ=60)

                                                               TCTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCG                               <  SRR4302537.5068450/94‑1 (MQ=60)

                                                                CTCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGNGCCTTGTTGCGTGATAGCCCGA                              >  SRR4302537.5946895/1‑94 (MQ=60)

                                                                 TCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGAT                             <  SRR4302537.963846/94‑1 (MQ=60)

                                                                 TCGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGAT                             >  SRR4302537.1489461/1‑94 (MQ=60)

                                                                  CGATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATT                            <  SRR4302537.4739870/94‑1 (MQ=60)

                                                                   GATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTC                           <  SRR4302537.702967/94‑1 (MQ=60)

                                                                    ATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCT                          <  SRR4302537.2598085/94‑1 (MQ=60)

                                                                    ATACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCT                          >  SRR4302537.5729936/1‑94 (MQ=60)

                                                                     TACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTG                         <  SRR4302537.6100410/94‑1 (MQ=60)

                                                                      ACAGTGATTGGTGAAAACGGCGCGCTGCTTTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCGCGATTCTGA                        >  SRR4302537.2075820/1‑94 (MQ=60)

                                                                      ACAGTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGA                        >  SRR4302537.992388/1‑94 (MQ=60)

                                                                         GTGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTC                     <  SRR4302537.5830897/94‑1 (MQ=60)

                                                                         GTGATTGGTGAAAACGGCGCGCTGCTCTCCGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTC                     >  SRR4302537.5150882/1‑94 (MQ=60)

                                                                          TGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCT                    <  SRR4302537.393880/94‑1 (MQ=60)

                                                                          TGATTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCT                    <  SRR4302537.2169859/94‑1 (MQ=60)

                                                                            GTTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGG                  <  SRR4302537.232549/94‑1 (MQ=60)

                                                                             TTGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGA                 <  SRR4302537.2501472/94‑1 (MQ=60)

                                                                              TGGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGAC                <  SRR4302537.6357292/94‑1 (MQ=60)

                                                                               GGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACG               <  SRR4302537.4914827/94‑1 (MQ=60)

                                                                               GGTGAAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACG               >  SRR4302537.352535/1‑94 (MQ=60)

                                                                                   AAAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGC           >  SRR4302537.6382965/1‑94 (MQ=60)

                                                                                    AAACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCT          >  SRR4302537.2916150/1‑94 (MQ=60)

                                                                                     AACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTA         >  SRR4302537.220108/1‑94 (MQ=60)

                                                                                      ACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTAC        <  SRR4302537.2755167/94‑1 (MQ=60)

                                                                                      ACGGCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTAC        <  SRR4302537.469711/94‑1 (MQ=60)

                                                                                         GCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTC     <  SRR4302537.1120686/94‑1 (MQ=60)

                                                                                         GCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTC     <  SRR4302537.6214047/94‑1 (MQ=60)

                                                                                         GCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTC     <  SRR4302537.481706/94‑1 (MQ=60)

                                                                                         GCGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTC     <  SRR4302537.4161967/94‑1 (MQ=60)

                                                                                          CGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCG    <  SRR4302537.936680/94‑1 (MQ=60)

                                                                                          CGCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCG    >  SRR4302537.5401742/1‑94 (MQ=60)

                                                                                           GCGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGG   <  SRR4302537.4082160/94‑1 (MQ=60)

                                                                                            CGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGC  >  SRR4302537.3591537/1‑94 (MQ=60)

GCAAATTGAAGAAGCGGCGCGTATGGCCTACGCCATGGACTTCATCAATAAGATGGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGTGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGC  >  NC_000913/967187‑967372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`