Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	971,671	T→C	F233L (TTC→CTC)	b0919 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	971,671	0	T	C	100.0%	784.8 / NA	222	F233L (TTC→CTC)	b0919	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (129/93); total (129/93)

Only 100 of 225 total aligned reads displayed.

CGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGTTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGT  >  NC_000913/971581‑971760

cGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTc                                                                                         <  2:5981270/93‑1 (MQ=255)

cGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTc                                                                                         <  1:1485177/93‑1 (MQ=255)

cGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTc                                                                                         <  1:4393196/93‑1 (MQ=255)

cGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTc                                                                                         <  2:5854067/93‑1 (MQ=255)

 gcagcaTGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTcc                                                                                        <  2:5344920/93‑1 (MQ=255)

   agcaTGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGa                                                                                      <  2:4138655/93‑1 (MQ=255)

   agcaTGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGa                                                                                      <  1:6403703/93‑1 (MQ=255)

      aTGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTa                                                                                   >  1:4746123/1‑93 (MQ=255)

       tGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTaa                                                                                  >  1:1809878/1‑93 (MQ=255)

        gTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAAt                                                                                 >  2:6033797/1‑93 (MQ=255)

         ttGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGTGCCCGGACTAATGCTTTGGGCAACGCGAGAATACGAACTGCTCCGACTAATg                                                                                >  2:1580399/1‑93 (MQ=255)

         ttGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATg                                                                                <  2:2857189/93‑1 (MQ=255)

         ttGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATg                                                                                >  1:3947129/1‑93 (MQ=255)

           gAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTCATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACNAATggt                                                                              >  1:1030560/1‑92 (MQ=255)

           gAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGa                                                                              <  2:6093555/93‑1 (MQ=255)

             aaGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATa                                                                            >  2:2100884/1‑93 (MQ=255)

              aGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATaa                                                                           >  2:371321/1‑93 (MQ=255)

              aGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATaa                                                                           <  1:4310866/93‑1 (MQ=255)

               gATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAAt                                                                          >  2:425868/1‑93 (MQ=255)

                 ttCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATtc                                                                        >  2:2501073/1‑93 (MQ=255)

                 ttCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATtc                                                                        >  2:1744071/1‑93 (MQ=255)

                  tCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATtct                                                                       >  1:2191818/1‑93 (MQ=255)

                   cgcgCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATtctc                                                                      <  1:4600642/93‑1 (MQ=255)

                      gcAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTgg                                                                   >  1:3114494/1‑93 (MQ=255)

                      gcAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTgg                                                                   <  2:1971345/93‑1 (MQ=255)

                       cAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGc                                                                  >  2:1643594/1‑93 (MQ=255)

                        aGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCg                                                                 >  1:382696/1‑93 (MQ=255)

                        aGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCg                                                                 >  1:1739333/1‑93 (MQ=255)

                         gCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCgg                                                                >  2:2657691/1‑93 (MQ=255)

                         gCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCgg                                                                >  1:5294571/1‑93 (MQ=255)

                           gATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGaa                                                              <  1:2942357/93‑1 (MQ=255)

                           gATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGaa                                                              >  1:167655/1‑93 (MQ=255)

                            aacAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAg                                                             >  2:4075981/3‑93 (MQ=255)

                            aTCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAg                                                             >  1:6364981/1‑93 (MQ=255)

                            aTCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAg                                                             >  1:5681520/1‑93 (MQ=255)

                            aTCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAg                                                             >  2:2327349/1‑93 (MQ=255)

                            aTCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAg                                                             >  2:4975525/1‑93 (MQ=255)

                            aTCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAg                                                             >  1:205539/1‑93 (MQ=255)

                            aTCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAg                                                             >  2:5553959/1‑93 (MQ=255)

                             tCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGa                                                            >  2:3544053/1‑93 (MQ=255)

                             tCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGa                                                            <  1:3696884/93‑1 (MQ=255)

                             tCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGa                                                            <  1:6426743/93‑1 (MQ=255)

                              cAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGAt                                                           >  1:3873775/1‑93 (MQ=255)

                                gTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGAttt                                                         <  2:2408081/93‑1 (MQ=255)

                                gTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGAttt                                                         >  1:4693811/1‑93 (MQ=255)

                                gTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGAttt                                                         >  1:3164640/1‑93 (MQ=255)

                                  tACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGc                                                       >  2:6336947/1‑93 (MQ=255)

                                   aCTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGct                                                      <  2:4627251/93‑1 (MQ=255)

                                    cTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGctc                                                     >  1:4499556/1‑93 (MQ=255)

                                     tGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGctct                                                    >  1:242548/1‑93 (MQ=255)

                                      ggCGATGGTCGGGCCGGTACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTg                                                   <  2:1179539/93‑1 (MQ=255)

                                      ggCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTg                                                   >  2:3258017/1‑93 (MQ=255)

                                      ggCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTg                                                   >  1:1161433/1‑93 (MQ=255)

                                      ggCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTg                                                   >  2:103697/1‑93 (MQ=255)

                                       gCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTgg                                                  <  1:3193232/93‑1 (MQ=255)

                                       gCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTgg                                                  >  1:575895/1‑93 (MQ=255)

                                        cGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGa                                                 >  1:3257049/1‑93 (MQ=255)

                                        cGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGa                                                 >  2:1333619/1‑93 (MQ=255)

                                        cGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGa                                                 <  2:3726249/93‑1 (MQ=255)

                                        cGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGa                                                 <  1:2100020/93‑1 (MQ=255)

                                        cGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGa                                                 <  2:5259528/93‑1 (MQ=255)

                                         gATGGTCTGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAg                                                <  1:2474289/93‑1 (MQ=255)

                                         gATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAg                                                <  2:4208587/93‑1 (MQ=255)

                                           tGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGtt                                              >  1:1009153/1‑93 (MQ=255)

                                            ggTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTa                                             >  1:6444663/1‑93 (MQ=255)

                                             gTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTAc                                            >  1:4947331/1‑93 (MQ=255)

                                                gggCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTg                                         <  1:5608796/93‑1 (MQ=255)

                                                     gggACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAAcg                                    >  1:4458380/1‑93 (MQ=255)

                                                      ggACTAATGCTTTGGTCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAAcgc                                   <  2:6265885/93‑1 (MQ=255)

                                                      ggACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAAcgc                                   <  2:3138064/93‑1 (MQ=255)

                                                      ggACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAAcgc                                   <  1:6014703/93‑1 (MQ=255)

                                                       gACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAAcgcg                                  >  2:3967417/1‑93 (MQ=255)

                                                        aCTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAAcgcgc                                 >  2:3380327/1‑93 (MQ=255)

                                                          tAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACgcgcgc                               >  1:6253433/1‑93 (MQ=255)

                                                             tGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAg                            >  2:1435535/1‑93 (MQ=255)

                                                             tGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAg                            >  1:737074/1‑93 (MQ=255)

                                                               cTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTg                          <  2:779117/93‑1 (MQ=255)

                                                               cTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTg                          >  1:4064857/1‑93 (MQ=255)

                                                                tttGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTgg                         >  2:2515006/1‑93 (MQ=255)

                                                                 ttGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGc                        <  1:5088185/93‑1 (MQ=255)

                                                                    ggCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGa                     <  2:4525776/93‑1 (MQ=255)

                                                                    ggCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGa                     <  1:1317883/93‑1 (MQ=255)

                                                                       aCCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTc                  >  2:4118468/1‑93 (MQ=255)

                                                                        ccGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCg                 <  1:2581278/93‑1 (MQ=255)

                                                                          gcgAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGtt               >  2:4850912/1‑93 (MQ=255)

                                                                          gcgAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGtt               <  2:2572464/93‑1 (MQ=255)

                                                                             agaATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGGCGTTCAt            >  1:6115771/1‑93 (MQ=255)

                                                                              gaATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATc           <  1:562912/93‑1 (MQ=255)

                                                                               aaTACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCt          >  1:2706921/1‑93 (MQ=255)

                                                                               aaTACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGGCGTTCATCt          >  1:4996636/1‑93 (MQ=255)

                                                                                aTACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTg         >  2:1874360/1‑93 (MQ=255)

                                                                                aTACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTg         >  1:4578426/1‑93 (MQ=255)

                                                                                 tACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTgg        >  2:843752/1‑93 (MQ=255)

                                                                                 tACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTgg        <  2:5406355/93‑1 (MQ=255)

                                                                                 tACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTgg        <  2:1008478/93‑1 (MQ=255)

                                                                                    gAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTggcgg     <  2:2808067/93‑1 (MQ=255)

                                                                                     aaCTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTggcggc    >  1:351951/1‑93 (MQ=255)

                                                                                     aaCTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTggcggc    >  1:357489/1‑93 (MQ=255)

                                                                                     aaCTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTggcggc    <  2:2826813/93‑1 (MQ=255)

                                                                                      aCTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGgcggcg   <  1:425217/93‑1 (MQ=255)

CGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGTTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGT  >  NC_000913/971581‑971760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTACGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGTTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTTGGT  >  NC_000913/971578‑971764

TTACGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGC                                                                                               <  SRR4302537.4274956/94‑1 (MQ=60)

TTACGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGC                                                                                               <  SRR4302537.4001914/94‑1 (MQ=60)

 TACGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCT                                                                                              <  SRR4302537.1101325/94‑1 (MQ=60)

 TACGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCT                                                                                              <  SRR4302537.142430/94‑1 (MQ=60)

  ACGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTC                                                                                             <  SRR4302537.3369252/94‑1 (MQ=60)

  ACGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTC                                                                                             >  SRR4302537.560203/1‑94 (MQ=60)

   CGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCGCCGCGAGAATACGAACTGCTCC                                                                                            <  SRR4302537.4286950/94‑1 (MQ=60)

   CGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCC                                                                                            <  SRR4302537.4423506/94‑1 (MQ=60)

   CGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCC                                                                                            <  SRR4302537.1495512/94‑1 (MQ=60)

    GCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCG                                                                                           <  SRR4302537.3935357/94‑1 (MQ=60)

     CAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGC                                                                                          >  SRR4302537.1100256/1‑94 (MQ=60)

     CAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGA                                                                                          >  SRR4302537.3266881/1‑94 (MQ=60)

      AGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGAC                                                                                         <  SRR4302537.6447292/94‑1 (MQ=60)

       GCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACT                                                                                        <  SRR4302537.835007/94‑1 (MQ=60)

        CATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTA                                                                                       >  SRR4302537.4778915/1‑94 (MQ=60)

         ATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAA                                                                                      >  SRR4302537.1822497/1‑94 (MQ=60)

           GTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATG                                                                                    >  SRR4302537.3974735/1‑94 (MQ=60)

           GTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATG                                                                                    >  SRR4302537.4871887/1‑94 (MQ=60)

            TTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGG                                                                                   >  SRR4302537.4512905/1‑94 (MQ=60)

             TGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTCATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACNAATGGT                                                                                  >  SRR4302537.1037658/1‑94 (MQ=60)

               AAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATA                                                                                >  SRR4302537.4757391/1‑94 (MQ=60)

               AAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATA                                                                                >  SRR4302537.6464131/1‑94 (MQ=60)

                 AGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAAT                                                                              >  SRR4302537.3592540/1‑94 (MQ=60)

                 AGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAAT                                                                              >  SRR4302537.5839783/1‑94 (MQ=60)

                 AGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAAT                                                                              <  SRR4302537.4340824/94‑1 (MQ=60)

                  GATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCTGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATT                                                                             <  SRR4302537.6445702/94‑1 (MQ=60)

                  GATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATT                                                                             <  SRR4302537.1720709/94‑1 (MQ=60)

                    TTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCT                                                                           >  SRR4302537.2207259/1‑94 (MQ=60)

                      CGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCT                                                                         <  SRR4302537.4632486/94‑1 (MQ=60)

                       GCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTG                                                                        >  SRR4302537.2714889/1‑94 (MQ=60)

                        CGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGG                                                                       >  SRR4302537.5710173/1‑94 (MQ=60)

                        CGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGG                                                                       >  SRR4302537.3136246/1‑94 (MQ=60)

                          CAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCG                                                                     >  SRR4302537.385345/1‑94 (MQ=60)

                          CAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCG                                                                     >  SRR4302537.1751458/1‑94 (MQ=60)

                           AGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGG                                                                    >  SRR4302537.6122502/1‑94 (MQ=60)

                           AGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGG                                                                    >  SRR4302537.5330952/1‑94 (MQ=60)

                           AGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGG                                                                    >  SRR4302537.3862641/1‑94 (MQ=60)

                            GCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGA                                                                   >  SRR4302537.6379273/1‑94 (MQ=60)

                             CGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAA                                                                  >  SRR4302537.168851/1‑94 (MQ=60)

                              GATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAG                                                                 <  SRR4302537.2963011/94‑1 (MQ=60)

                              GATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAG                                                                 >  SRR4302537.5720381/1‑94 (MQ=60)

                              GATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAG                                                                 >  SRR4302537.207012/1‑94 (MQ=60)

                              GATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAG                                                                 >  SRR4302537.6408396/1‑94 (MQ=60)

                              GATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAG                                                                 <  SRR4302537.4709654/94‑1 (MQ=60)

                               ATCAGTTGCTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGA                                                                <  SRR4302537.3811775/94‑1 (MQ=60)

                               ATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGA                                                                >  SRR4302537.2027876/1‑94 (MQ=60)

                                TCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGAT                                                               >  SRR4302537.3900874/1‑94 (MQ=60)

                                TCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGAT                                                               <  SRR4302537.6470415/94‑1 (MQ=60)

                                TCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGAT                                                               <  SRR4302537.3722897/94‑1 (MQ=60)

                                 CAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATT                                                              >  SRR4302537.4536599/1‑94 (MQ=60)

                                  AGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTT                                                             <  SRR4302537.4386164/94‑1 (MQ=60)

                                  AGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTT                                                             <  SRR4302537.428453/94‑1 (MQ=60)

                                  AGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTT                                                             >  SRR4302537.3186862/1‑94 (MQ=60)

                                  AGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTT                                                             >  SRR4302537.4726282/1‑94 (MQ=60)

                                     TACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCT                                                          <  SRR4302537.2414762/94‑1 (MQ=60)

                                      ACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTC                                                         >  SRR4302537.4530674/1‑94 (MQ=60)

                                       CTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCT                                                        >  SRR4302537.6444319/1‑94 (MQ=60)

                                       CTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCT                                                        >  SRR4302537.244267/1‑94 (MQ=60)

                                       CTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCT                                                        <  SRR4302537.6482130/94‑1 (MQ=60)

                                        TGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTG                                                       <  SRR4302537.4948881/94‑1 (MQ=60)

                                        TGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTG                                                       >  SRR4302537.1318684/1‑94 (MQ=60)

                                        TGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTG                                                       >  SRR4302537.1169510/1‑94 (MQ=60)

                                         GGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGG                                                      >  SRR4302537.579842/1‑94 (MQ=60)

                                          GCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGA                                                     >  SRR4302537.3280015/1‑94 (MQ=60)

                                          GCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGA                                                     <  SRR4302537.3215684/94‑1 (MQ=60)

                                          GCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGA                                                     <  SRR4302537.5185543/94‑1 (MQ=60)

                                           CGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAG                                                    >  SRR4302537.3437915/1‑94 (MQ=60)

                                           CGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAG                                                    <  SRR4302537.2114829/94‑1 (MQ=60)

                                           CGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTATGGCGGAAGATTTGCTCTGGAG                                                    >  SRR4302537.5557749/1‑94 (MQ=60)

                                            GATGGTCTGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGT                                                   <  SRR4302537.2491684/94‑1 (MQ=60)

                                             ATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTT                                                  >  SRR4302537.1016112/1‑94 (MQ=60)

                                              TGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTA                                                 >  SRR4302537.6488385/1‑94 (MQ=60)

                                               GGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTAC                                                >  SRR4302537.4981439/1‑94 (MQ=60)

                                               GGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTAC                                                <  SRR4302537.1791870/94‑1 (MQ=60)

                                                GTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACC                                               >  SRR4302537.6280789/1‑94 (MQ=60)

                                                GTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACC                                               >  SRR4302537.726764/1‑94 (MQ=60)

                                                GTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACC                                               <  SRR4302537.1450479/94‑1 (MQ=60)

                                                  CGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTG                                             <  SRR4302537.2074436/94‑1 (MQ=60)

                                                   GGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGC                                            <  SRR4302537.5647141/94‑1 (MQ=60)

                                                      CCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAAC                                         >  SRR4302537.5662768/1‑94 (MQ=60)

                                                       CGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACG                                        >  SRR4302537.4489206/1‑94 (MQ=60)

                                                         GGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCG                                      <  SRR4302537.6056025/94‑1 (MQ=60)

                                                         GGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCG                                      >  SRR4302537.3163220/1‑94 (MQ=60)

                                                         GGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCG                                      <  SRR4302537.150813/94‑1 (MQ=60)

                                                         GGACTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCG                                      >  SRR4302537.102668/1‑94 (MQ=60)

                                                            CTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGC                                   >  SRR4302537.1428047/1‑94 (MQ=60)

                                                            CTAATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGC                                   >  SRR4302537.6296394/1‑94 (MQ=60)

                                                              AATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCA                                 >  SRR4302537.2466284/1‑94 (MQ=60)

                                                              AATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCA                                 <  SRR4302537.3859205/94‑1 (MQ=60)

                                                               ATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAG                                >  SRR4302537.2889029/1‑94 (MQ=60)

                                                               ATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAG                                >  SRR4302537.572573/1‑94 (MQ=60)

                                                               ATGCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAG                                >  SRR4302537.742099/1‑94 (MQ=60)

                                                                 GCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTG                              >  SRR4302537.4222965/1‑94 (MQ=60)

                                                                 GCTTTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTG                              >  SRR4302537.4093260/1‑94 (MQ=60)

                                                                    TTGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCG                           <  SRR4302537.5123215/94‑1 (MQ=60)

                                                                     TGGGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGG                          <  SRR4302537.3202886/94‑1 (MQ=60)

                                                                       GGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAG                        <  SRR4302537.1327068/94‑1 (MQ=60)

                                                                       GGCACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAG                        <  SRR4302537.4065064/94‑1 (MQ=60)

                                                                         CACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGgg                      >  SRR4302537.596795/1‑92 (MQ=60)

                                                                          ACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCG                     >  SRR4302537.216815/1‑94 (MQ=60)

                                                                          ACCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCG                     >  SRR4302537.836906/1‑94 (MQ=60)

                                                                           CCGCGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGT                    <  SRR4302537.2599347/94‑1 (MQ=60)

                                                                              CGAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCA                 <  SRR4302537.3343115/94‑1 (MQ=60)

                                                                               GAGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGGCGTTCAT                >  SRR4302537.6157797/1‑94 (MQ=60)

                                                                                AGAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATC               <  SRR4302537.4625994/94‑1 (MQ=60)

                                                                                 GAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCT              <  SRR4302537.566786/94‑1 (MQ=60)

                                                                                 GAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCT              <  SRR4302537.2474981/94‑1 (MQ=60)

                                                                                 GAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCT              >  SRR4302537.2725820/1‑94 (MQ=60)

                                                                                 GAATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGGCGTTCATCT              >  SRR4302537.5031070/1‑94 (MQ=60)

                                                                                  AATACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTG             >  SRR4302537.4610105/1‑94 (MQ=60)

                                                                                    TACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGC           <  SRR4302537.370796/94‑1 (MQ=60)

                                                                                    TACGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTCGAGTGACCTGCAACGCGCGCCAGTGGCGGAGACTTTCATCTCGC           >  SRR4302537.504394/1‑94 (MQ=60)

                                                                                      CGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGG         >  SRR4302537.2527666/1‑94 (MQ=60)

                                                                                      CGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGG         >  SRR4302537.1951250/1‑94 (MQ=60)

                                                                                      CGAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGG         >  SRR4302537.3122887/1‑94 (MQ=60)

                                                                                       GAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGC        >  SRR4302537.354395/1‑94 (MQ=60)

                                                                                       GAACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGC        >  SRR4302537.359970/1‑94 (MQ=60)

                                                                                        AACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTGTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCG       >  SRR4302537.4573230/1‑94 (MQ=60)

                                                                                        AACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCG       <  SRR4302537.3025586/94‑1 (MQ=60)

                                                                                         ACTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGT      <  SRR4302537.428164/94‑1 (MQ=60)

                                                                                          CTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTT     <  SRR4302537.5008822/94‑1 (MQ=60)

                                                                                          CTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTT     >  SRR4302537.3789314/1‑94 (MQ=60)

                                                                                          CTGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTT     <  SRR4302537.4470134/94‑1 (MQ=60)

                                                                                           TGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTTG    <  SRR4302537.168650/94‑1 (MQ=60)

                                                                                           TGCTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTTG    >  SRR4302537.1005782/1‑94 (MQ=60)

                                                                                             CTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTTGGT  >  SRR4302537.5551126/1‑94 (MQ=60)

TTACGCAGCATGTTGAAAGATTCGCGCAGCGATCAGTTACTGGCGATGGTCGGGCCGGGACTAATGCTTTGGGCACCGCGAGAATACGAACTGTTCCGACTAATGGATAATTCTCTGGCGGAAGATTTGCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTTGGT  >  NC_000913/971578‑971764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`