Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,953,793 T→C G413G (GGA→GGG)  b1872 ← biotin sulfoxide reductase 2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,953,7930TC100.0% 609.1 / NA 177G413G (GGA→GGG) b1872biotin sulfoxide reductase 2
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (85/92);  total (85/92)

Only 100 of 189 total aligned reads displayed.

ATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGTCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACC  >  NC_000913/1953703‑1953882
                                                                                          |                                                                                         
atatTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGccc                                                                                         >  1:4099681/1‑93 (MQ=255)
 tatTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCg                                                                                        <  1:4351553/93‑1 (MQ=255)
 tatTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCg                                                                                        >  1:1805991/1‑93 (MQ=255)
 tatTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCg                                                                                        <  2:1647976/93‑1 (MQ=255)
     tGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCaa                                                                                    <  1:3763813/93‑1 (MQ=255)
     tGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCaa                                                                                    <  1:1581999/93‑1 (MQ=255)
      gccgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCCAt                                                                                   >  2:5020691/1‑93 (MQ=255)
      gccgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAAt                                                                                   >  1:6200196/1‑93 (MQ=255)
      gccgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAAt                                                                                   <  1:1930563/93‑1 (MQ=255)
      gccgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAAt                                                                                   <  1:1982685/93‑1 (MQ=255)
      gccgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAAt                                                                                   >  1:1162831/1‑93 (MQ=255)
       ccgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATc                                                                                  <  2:2291212/93‑1 (MQ=255)
         gccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATcgc                                                                                >  1:1829345/1‑93 (MQ=255)
         gccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATcgc                                                                                >  1:4054572/1‑93 (MQ=255)
            aGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATcgccgc                                                                             >  1:5738114/1‑93 (MQ=255)
            aGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATcgccgc                                                                             >  1:4848770/1‑93 (MQ=255)
             ggATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCa                                                                            <  2:3898880/93‑1 (MQ=255)
             ggATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCa                                                                            >  2:5178542/1‑93 (MQ=255)
             ggATTTTCCAGCGAATCGACGATGCGGGCAACATGAATCGCCGTCATTCCGCCATCATCAGCTGCCTCGCTGGCATGCCCGGCAGTCGCCGCa                                                                            <  2:6315112/93‑1 (MQ=255)
               aTTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGa                                                                          >  1:3566066/1‑93 (MQ=255)
                 tttCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACa                                                                        <  2:3491277/93‑1 (MQ=255)
                  ttCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACAt                                                                       >  2:4715040/1‑93 (MQ=255)
                   tCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACAtt                                                                      <  2:6069426/93‑1 (MQ=255)
                    ccAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACAttt                                                                     <  2:2180950/93‑1 (MQ=255)
                    ccAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACAttt                                                                     >  2:5532759/1‑93 (MQ=255)
                    ccAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACAttt                                                                     >  2:6332784/1‑93 (MQ=255)
                     cAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTc                                                                    <  2:3551560/93‑1 (MQ=255)
                      aGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTcc                                                                   >  1:2856871/1‑93 (MQ=255)
                       gcgcATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCg                                                                  >  2:1776262/1‑93 (MQ=255)
                       gcgcATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCg                                                                  >  1:3578553/1‑93 (MQ=255)
                       gcgcATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCg                                                                  >  2:1578528/1‑93 (MQ=255)
                          cATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGGCATTTCCCgca                                                               >  1:3164232/1‑93 (MQ=255)
                           aTCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGgcag                                                              >  2:4385496/1‑93 (MQ=255)
                           aTCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGgcag                                                              <  2:4760824/93‑1 (MQ=255)
                           aTCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGgcag                                                              >  2:2598700/1‑93 (MQ=255)
                            tCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGgcagc                                                             >  1:558675/1‑93 (MQ=255)
                            tCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGgcagc                                                             >  1:1205888/1‑93 (MQ=255)
                                cgaTACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCAcgc                                                         >  1:1317353/1‑93 (MQ=255)
                                 gaTACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCAcgcc                                                        >  2:1262432/1‑93 (MQ=255)
                                 gaTACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCAcgcc                                                        <  2:3544243/93‑1 (MQ=255)
                                 gaTACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCAcgcc                                                        >  1:1492727/1‑93 (MQ=255)
                                 gaTACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCAcgcc                                                        >  2:8680/1‑93 (MQ=255)
                                  aTACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCAcgccg                                                       <  2:4142710/93‑1 (MQ=255)
                                      gggCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCaa                                                   <  1:680582/93‑1 (MQ=255)
                                       ggCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATTCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAac                                                  <  1:3465034/93‑1 (MQ=255)
                                       ggCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAac                                                  >  2:2860458/1‑93 (MQ=255)
                                        gCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAaca                                                 <  2:2249313/93‑1 (MQ=255)
                                         cAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAacac                                                <  2:1511411/93‑1 (MQ=255)
                                            cAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACAcgcg                                             >  1:3288792/1‑93 (MQ=255)
                                             aGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGt                                            >  2:3301951/1‑93 (MQ=255)
                                             aGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGt                                            <  2:1143138/93‑1 (MQ=255)
                                             aGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGt                                            <  1:1099964/93‑1 (MQ=255)
                                             aGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATAGCCGCAGACATTTCCGGCAGCACGCCGCCAACAcgcgc                                            >  1:888244/1‑92 (MQ=255)
                                                aaTCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCgg                                         <  2:5787671/93‑1 (MQ=255)
                                                aaTCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCgg                                         <  2:2631377/93‑1 (MQ=255)
                                                     ccGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGc                                    >  2:585286/1‑93 (MQ=255)
                                                     ccGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGc                                    >  1:1001153/1‑93 (MQ=255)
                                                      cGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGcc                                   >  2:4005636/1‑93 (MQ=255)
                                                       gTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCa                                  >  2:5051237/1‑93 (MQ=255)
                                                       gTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCa                                  >  2:1721323/1‑93 (MQ=255)
                                                       gTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCa                                  >  2:2220108/1‑93 (MQ=255)
                                                        tCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCAc                                 >  1:5425235/1‑93 (MQ=255)
                                                           ttCCGCCATCATCGGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGt                              <  1:4250432/93‑1 (MQ=255)
                                                           ttCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGt                              <  1:537543/93‑1 (MQ=255)
                                                           ttCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGt                              >  1:5135753/1‑93 (MQ=255)
                                                            tCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGtt                             <  2:543079/93‑1 (MQ=255)
                                                            tCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGtt                             <  1:3032385/93‑1 (MQ=255)
                                                            tCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGtg                             >  1:988415/1‑92 (MQ=255)
                                                             ccGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTg                            <  1:6063768/93‑1 (MQ=255)
                                                             ccGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTg                            <  2:3121368/93‑1 (MQ=255)
                                                              cGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTgg                           <  2:6114131/93‑1 (MQ=255)
                                                               cccATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGa                          <  1:16760/92‑1 (MQ=255)
                                                                ccATCATCAGCGGCCTCGCTGGCGTGCCCGGCCATCGCCGCAGACATTTCCGGCAGCACGCCCCCAACACGCGTCGGGTTGCCACCGTTGGAg                         <  1:239997/93‑1 (MQ=255)
                                                                ccATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAg                         <  1:1749211/93‑1 (MQ=255)
                                                                 catcatCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGt                        >  2:3702858/1‑93 (MQ=255)
                                                                  atcatcAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACCTTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGCTGGAGTa                       >  1:3654654/1‑93 (MQ=255)
                                                                  atcatcAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTa                       >  2:1429639/1‑93 (MQ=255)
                                                                   tcatcaGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTaa                      <  1:517576/93‑1 (MQ=255)
                                                                   tcatcaGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTaa                      >  1:4717180/1‑93 (MQ=255)
                                                                    catcaGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAAt                     <  2:161137/93‑1 (MQ=255)
                                                                      tcaGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGa                   <  1:333062/93‑1 (MQ=255)
                                                                        aGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATa                 <  2:4674313/93‑1 (MQ=255)
                                                                         gCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATaa                <  1:656146/93‑1 (MQ=255)
                                                                         gCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATaa                <  2:481490/93‑1 (MQ=255)
                                                                          cGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAag               <  2:4185783/93‑1 (MQ=255)
                                                                            gCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAagag             <  2:6367619/93‑1 (MQ=255)
                                                                             ccTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAgaga            <  1:4940298/93‑1 (MQ=255)
                                                                              cTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGaa           >  1:4216324/1‑93 (MQ=255)
                                                                               tCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGaaa          <  2:6406989/93‑1 (MQ=255)
                                                                               tCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGaaa          >  2:2721290/1‑93 (MQ=255)
                                                                               tCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGaaa          <  2:339706/93‑1 (MQ=255)
                                                                                 gCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAAcc        <  2:1116280/93‑1 (MQ=255)
                                                                                 gCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAAcc        >  1:2269065/1‑93 (MQ=255)
                                                                                  cTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCa       <  2:4563118/93‑1 (MQ=255)
                                                                                    ggCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaaa     <  2:4231942/93‑1 (MQ=255)
                                                                                     gCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaaaa    <  1:6390742/93‑1 (MQ=255)
                                                                                     gCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaaaa    <  1:4470146/93‑1 (MQ=255)
                                                                                     gCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaaaa    <  2:1805991/93‑1 (MQ=255)
                                                                                      cATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACCCGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAAc   <  1:280601/93‑1 (MQ=255)
                                                                                       aTGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAAcc  <  1:2676497/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGTCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACC  >  NC_000913/1953703‑1953882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGTCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCG  >  NC_000913/1953701‑1953886
                                                                                            |                                                                                             
TGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCC                                                                                              >  SRR4302537.220814/1‑94 (MQ=60)
TGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCC                                                                                              <  SRR4302537.126984/94‑1 (MQ=60)
 TATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCC                                                                                             <  SRR4302537.3217433/94‑1 (MQ=60)
 GATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCC                                                                                             >  SRR4302537.4128300/1‑94 (MQ=60)
 GATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCC                                                                                             <  SRR4302537.744357/94‑1 (MQ=60)
  ATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCG                                                                                            >  SRR4302537.1818591/1‑94 (MQ=60)
  ATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGACATGCCCG                                                                                            <  SRR4302537.2876301/94‑1 (MQ=60)
  ATATTTGCCGCCAGCATTTTCCAGCGCATCGACGATACGAGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCG                                                                                            <  SRR4302537.4258286/94‑1 (MQ=60)
   TATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGG                                                                                           <  SRR4302537.4381695/94‑1 (MQ=60)
       TGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAAT                                                                                       <  SRR4302537.1593058/94‑1 (MQ=60)
       TGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAAT                                                                                       <  SRR4302537.3790243/94‑1 (MQ=60)
       TGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAAT                                                                                       >  SRR4302537.1170917/1‑94 (MQ=60)
       TGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAAT                                                                                       >  SRR4302537.6242927/1‑94 (MQ=60)
        GCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATC                                                                                      <  SRR4302537.1996461/94‑1 (MQ=60)
        GCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATC                                                                                      <  SRR4302537.1943993/94‑1 (MQ=60)
          CGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGC                                                                                    >  SRR4302537.4082913/1‑94 (MQ=60)
          CGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGC                                                                                    >  SRR4302537.1842091/1‑94 (MQ=60)
          CGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGC                                                                                    >  SRR4302537.1992877/1‑94 (MQ=60)
            CCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCG                                                                                  <  SRR4302537.3705007/94‑1 (MQ=60)
             CAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGC                                                                                 >  SRR4302537.4882229/1‑94 (MQ=60)
             CAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGC                                                                                 >  SRR4302537.5777400/1‑94 (MQ=60)
               GGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCTCTGGCATGCCCGGCAATCGCCGCAG                                                                               <  SRR4302537.349375/94‑1 (MQ=60)
                GATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGA                                                                              >  SRR4302537.3591215/1‑94 (MQ=60)
                    TTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATT                                                                          >  SRR4302537.5755735/1‑94 (MQ=60)
                      CCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTC                                                                        <  SRR4302537.5504709/94‑1 (MQ=60)
                       CAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCC                                                                       >  SRR4302537.2876902/1‑94 (MQ=60)
                        AGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCG                                                                      >  SRR4302537.3603781/1‑94 (MQ=60)
                           GCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATTCCCGGCAATCGCCGCAGACATTTCCGGCA                                                                   >  SRR4302537.1462677/1‑94 (MQ=60)
                           GCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGGCATTTCCCGCA                                                                   >  SRR4302537.3186450/1‑94 (MQ=60)
                            CATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAG                                                                  <  SRR4302537.1317983/94‑1 (MQ=60)
                             ATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGC                                                                 >  SRR4302537.1214280/1‑94 (MQ=60)
                             ATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGC                                                                 >  SRR4302537.562520/1‑94 (MQ=60)
                              TCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCA                                                                <  SRR4302537.3316158/94‑1 (MQ=60)
                              TCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCA                                                                >  SRR4302537.2493502/1‑94 (MQ=60)
                               CGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATGGCCGCAGACATTTCCGGCAGCAC                                                               >  SRR4302537.4317500/1‑94 (MQ=60)
                                GACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACG                                                              >  SRR4302537.121324/1‑94 (MQ=60)
                                 ACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGC                                                             >  SRR4302537.1326535/1‑94 (MQ=60)
                                  CGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCC                                                            >  SRR4302537.1794814/1‑94 (MQ=60)
                                  CGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCC                                                            >  SRR4302537.1503123/1‑94 (MQ=60)
                                        GGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAAC                                                      <  SRR4302537.4999634/94‑1 (MQ=60)
                                        GGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAAC                                                      <  SRR4302537.2374163/94‑1 (MQ=60)
                                        GGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAAC                                                      <  SRR4302537.685247/94‑1 (MQ=60)
                                         GGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATTCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACA                                                     <  SRR4302537.3489535/94‑1 (MQ=60)
                                           CAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACG                                                   >  SRR4302537.3001370/1‑94 (MQ=60)
                                             ACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCG                                                 >  SRR4302537.3312036/1‑94 (MQ=60)
                                             ACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCG                                                 >  SRR4302537.3241373/1‑94 (MQ=60)
                                              CAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGT                                                >  SRR4302537.1615905/1‑94 (MQ=60)
                                              CAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATAGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGC                                                >  SRR4302537.894353/1‑94 (MQ=60)
                                               AGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTC                                               >  SRR4302537.1139727/1‑94 (MQ=60)
                                               AGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTC                                               <  SRR4302537.1107564/94‑1 (MQ=60)
                                               AGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCAAGCCGCCAACACGCGTC                                               >  SRR4302537.929471/1‑94 (MQ=60)
                                                    TCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTT                                          <  SRR4302537.3481590/94‑1 (MQ=60)
                                                      GCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGC                                        >  SRR4302537.1008064/1‑94 (MQ=60)
                                                       CCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCC                                       >  SRR4302537.5823656/1‑94 (MQ=60)
                                                        CGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCC                                      >  SRR4302537.4176610/1‑94 (MQ=60)
                                                         GTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCAC                                     >  SRR4302537.5462215/1‑94 (MQ=60)
                                                           CATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCG                                   >  SRR4302537.6517923/1‑94 (MQ=60)
                                                            ATTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGT                                  >  SRR4302537.5171140/1‑94 (MQ=60)
                                                             TTCCGCCATCATCGGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTT                                 <  SRR4302537.4279972/94‑1 (MQ=60)
                                                             TTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTT                                 <  SRR4302537.541232/94‑1 (MQ=60)
                                                             TTCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTG                                 >  SRR4302537.995245/1‑94 (MQ=60)
                                                              TCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTG                                <  SRR4302537.3850871/94‑1 (MQ=60)
                                                              TCCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTG                                <  SRR4302537.3053529/94‑1 (MQ=60)
                                                               CCGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGG                               <  SRR4302537.6105430/94‑1 (MQ=60)
                                                                CGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGA                              <  SRR4302537.4826614/94‑1 (MQ=60)
                                                                CGCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTACCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGA                              <  SRR4302537.4575396/94‑1 (MQ=60)
                                                                 GCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAG                             <  SRR4302537.730317/94‑1 (MQ=60)
                                                                 CCCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAG                             <  SRR4302537.16895/94‑1 (MQ=60)
                                                                  CCATCATCAGCGGCCTCGCTGGCGTGCCCGGCCATCGCCGCAGACATTTCCGGCAGCACGCCCCCAACACGCGTCGGGTTGCCACCGTTGGAGT                            <  SRR4302537.241697/94‑1 (MQ=60)
                                                                  CCATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGT                            <  SRR4302537.1761409/94‑1 (MQ=60)
                                                                   CATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACCTTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGCTGGAGTA                           >  SRR4302537.3680374/1‑94 (MQ=60)
                                                                   CATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTA                           >  SRR4302537.4947215/1‑94 (MQ=60)
                                                                    ATCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAA                          >  SRR4302537.4749799/1‑94 (MQ=60)
                                                                     TCATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAAT                         <  SRR4302537.521140/94‑1 (MQ=60)
                                                                      CATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATG                        <  SRR4302537.2065816/94‑1 (MQ=60)
                                                                       ATCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGA                       >  SRR4302537.1900707/1‑94 (MQ=60)
                                                                        TCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGAT                      <  SRR4302537.6187121/94‑1 (MQ=60)
                                                                        TCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGAT                      <  SRR4302537.335364/94‑1 (MQ=60)
                                                                        TCAGCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGAT                      <  SRR4302537.2795606/94‑1 (MQ=60)
                                                                           GCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAG                   <  SRR4302537.3606899/94‑1 (MQ=60)
                                                                           GCGGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAG                   <  SRR4302537.660618/94‑1 (MQ=60)
                                                                             GGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAG                 >  SRR4302537.5410782/1‑94 (MQ=60)
                                                                             GGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAG                 >  SRR4302537.1522786/1‑94 (MQ=60)
                                                                             GGCCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAG                 <  SRR4302537.3595420/94‑1 (MQ=60)
                                                                               CCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAA               >  SRR4302537.4245715/1‑94 (MQ=60)
                                                                               CCTCGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAA               <  SRR4302537.4974371/94‑1 (MQ=60)
                                                                                  CGCTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACC            >  SRR4302537.2285092/1‑94 (MQ=60)
                                                                                    CTGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAA          >  SRR4302537.6416983/1‑94 (MQ=60)
                                                                                     TGGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAA         <  SRR4302537.4488318/94‑1 (MQ=60)
                                                                                     TGGCATCCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAA         <  SRR4302537.1692665/94‑1 (MQ=60)
                                                                                      GGCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAA        <  SRR4302537.541249/94‑1 (MQ=60)
                                                                                       GCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAAC       <  SRR4302537.6434281/94‑1 (MQ=60)
                                                                                       GCATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAAC       <  SRR4302537.4501061/94‑1 (MQ=60)
                                                                                        CATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACCCGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACC      <  SRR4302537.282558/94‑1 (MQ=60)
                                                                                         ATGCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCG     <  SRR4302537.2695186/94‑1 (MQ=60)
                                                                                           GCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCC   <  SRR4302537.3591697/94‑1 (MQ=60)
                                                                                           GCCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCC   <  SRR4302537.1450831/94‑1 (MQ=60)
                                                                                            CCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCG  <  SRR4302537.2392864/94‑1 (MQ=60)
                                                                                            |                                                                                             
TGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCGCCATCATCAGCGGCCTCGCTGGCATGTCCGGCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCG  >  NC_000913/1953701‑1953886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑