Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,008,480	+A	coding (637/654 nt)	yedK →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,008,476	1	.	A	99.5%	719.8 / ‑6.5	203	V211V (GTT→GTA)	yedK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/1); major base A (83/118); minor base G (0/1); total (83/120)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 226 total aligned reads displayed.

AGCGGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTA  >  NC_000913/2008384‑2008563

 gCGGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGTTATCGCGCGCGGTGGGTAATGTT‑a                                                                                        >  1:3651352/1‑93 (MQ=255)

 gCGGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑a                                                                                        <  2:523925/93‑1 (MQ=255)

  cGGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑aa                                                                                       <  2:6188170/93‑1 (MQ=255)

    gTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑aaaa                                                                                     >  2:4736552/1‑93 (MQ=255)

      aaaGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑aaaaac                                                                                   <  2:4284548/93‑3 (MQ=255)

        agaagCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTGAAAACCa                                                                                  <  1:770302/93‑1 (MQ=255)

        agaagCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑aaaaacca                                                                                 >  2:5351934/1‑89 (MQ=255)

           agCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAggg                                                                               <  1:1186888/93‑1 (MQ=255)

           agCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAggg                                                                               <  1:5489445/93‑1 (MQ=255)

           agCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAggg                                                                               <  1:2250673/93‑1 (MQ=255)

           agCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAggg                                                                               >  2:899237/1‑93 (MQ=255)

               tCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGcgcg                                                                           <  1:4141202/93‑1 (MQ=255)

                cAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCgg                                                                          >  1:1859115/1‑93 (MQ=255)

                cAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCgg                                                                          >  2:4445145/1‑93 (MQ=255)

                cAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCgg                                                                          <  1:3602480/93‑1 (MQ=255)

                 aGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGa                                                                         >  1:2106777/1‑93 (MQ=255)

                   aaaTCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGt                                                                       <  1:1578297/93‑1 (MQ=255)

                   aaaTCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGt                                                                       >  2:3761302/1‑93 (MQ=255)

                   aaaTCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGt                                                                       <  1:1069089/93‑1 (MQ=255)

                     aTCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTa                                                                     >  1:1674463/1‑93 (MQ=255)

                        gcgGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAAtt                                                                  >  1:4522867/1‑93 (MQ=255)

                        gcgGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAAtt                                                                  <  1:5087320/93‑1 (MQ=255)

                         cgGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTc                                                                 <  2:3111404/93‑1 (MQ=255)

                         cgGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTc                                                                 <  1:1623057/93‑1 (MQ=255)

                             cAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAAcc                                                             >  2:1763038/1‑93 (MQ=255)

                             cAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGAGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAAcc                                                             <  1:3472970/93‑1 (MQ=255)

                              aGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCt                                                            >  1:5297382/1‑93 (MQ=255)

                              aGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCt                                                            >  2:3127391/1‑93 (MQ=255)

                              aGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCt                                                            <  2:5317453/93‑1 (MQ=255)

                              aGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCt                                                            <  1:2764280/93‑1 (MQ=255)

                              aGTGGCTGTGTTCCAGCAAACCAGTACTCCTTGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTGATTCAACCt                                                            >  2:3528994/1‑93 (MQ=255)

                               gTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTg                                                           >  2:6408543/1‑93 (MQ=255)

                               gTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTg                                                           <  2:4412626/93‑1 (MQ=255)

                                tGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGt                                                          <  2:5810322/93‑1 (MQ=255)

                                tGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGt                                                          <  2:1532871/93‑1 (MQ=255)

                                 ggCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGtt                                                         <  1:3320450/93‑1 (MQ=255)

                                 ggCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGtt                                                         <  1:4312528/93‑1 (MQ=255)

                                  gCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGttt                                                        <  2:2033021/93‑1 (MQ=255)

                                  gCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGttt                                                        <  1:5194805/93‑1 (MQ=255)

                                  gCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGttt                                                        >  2:3731880/1‑93 (MQ=255)

                                   cTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTg                                                       >  1:4095909/1‑93 (MQ=255)

                                    tgtgTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGa                                                      <  1:2710370/93‑1 (MQ=255)

                                      tgtTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATa                                                    >  2:4079591/1‑93 (MQ=255)

                                       gtTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATaa                                                   <  1:6278748/93‑1 (MQ=255)

                                       gtTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATaa                                                   <  2:763576/93‑1 (MQ=255)

                                       gtTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATaa                                                   >  2:5013238/1‑93 (MQ=255)

                                       gtTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATaa                                                   <  2:5255619/93‑1 (MQ=255)

                                           cAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCt                                               >  2:2978251/1‑93 (MQ=255)

                                            aGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTg                                              <  1:5360846/93‑1 (MQ=255)

                                            aGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTg                                              >  2:5545049/1‑93 (MQ=255)

                                            aGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTg                                              >  2:5654904/1‑93 (MQ=255)

                                             gCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTgg                                             >  2:3448336/1‑93 (MQ=255)

                                             gCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTgg                                             >  1:1359768/1‑93 (MQ=255)

                                              cAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGga                                            >  1:6315555/1‑93 (MQ=255)

                                              cAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGga                                            >  1:2338588/1‑93 (MQ=255)

                                                aaCCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGgaga                                          <  1:6264262/93‑1 (MQ=255)

                                                 aCCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGat                                         <  1:2588194/93‑1 (MQ=255)

                                                 aCCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGat                                         <  2:2994283/93‑1 (MQ=255)

                                                   cAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGGTAATTCAACCTGTTTGATAAGCCTGGAGatta                                       >  1:4566510/1‑93 (MQ=255)

                                                    aGTTCTCCTGGCACACGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGattat                                      <  1:4224579/93‑1 (MQ=255)

                                                     gTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGCTAATTCAACCTGTTTGATAAGCCTGGAGattatt                                     >  2:859297/1‑93 (MQ=255)

                                                       tctcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGa                                   >  1:288479/1‑93 (MQ=255)

                                                       tctcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGa                                   >  1:3907737/1‑93 (MQ=255)

                                                        ctcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGAt                                  <  1:3204807/93‑1 (MQ=255)

                                                        ctcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGAt                                  <  1:1954448/93‑1 (MQ=255)

                                                         tcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATc                                 >  2:4915159/1‑93 (MQ=255)

                                                          ccTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATca                                >  1:2487624/1‑93 (MQ=255)

                                                           cTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaa                               >  1:6018536/1‑93 (MQ=255)

                                                           cTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaa                               >  1:5753379/1‑93 (MQ=255)

                                                           cTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaa                               <  2:3428139/93‑1 (MQ=255)

                                                            tGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaac                              <  1:4374546/93‑1 (MQ=255)

                                                             ggCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaaca                             <  2:2849576/93‑1 (MQ=255)

                                                             ggCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaaca                             >  2:3459946/1‑93 (MQ=255)

                                                              gCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaacaa                            <  2:4566192/93‑1 (MQ=255)

                                                               cACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAAt                           <  1:680470/93‑1 (MQ=255)

                                                                ccccGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATa                          <  2:568230/92‑1 (MQ=255)

                                                                 cccGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATAc                         <  2:2758064/93‑1 (MQ=255)

                                                                 cccGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATAc                         <  2:2642198/93‑1 (MQ=255)

                                                                  ccGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACt                        <  2:1476717/93‑1 (MQ=255)

                                                                  ccGGTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACt                        <  1:2531673/93‑1 (MQ=255)

                                                                    ggTATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGc                      <  2:1146950/93‑1 (MQ=255)

                                                                      tATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGt                    >  1:2073938/1‑93 (MQ=255)

                                                                      tATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGt                    >  2:2388789/1‑93 (MQ=255)

                                                                      tATCGCGCGCGGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGt                    <  1:759862/93‑1 (MQ=255)

                                                                             cgcgGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGa             <  1:1100088/93‑1 (MQ=255)

                                                                               cgGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGaaa           >  1:516832/1‑93 (MQ=255)

                                                                               cgGTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGaaa           <  1:1769351/93‑1 (MQ=255)

                                                                                ggTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAt          <  2:2218838/93‑1 (MQ=255)

                                                                                 gTGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAtc         <  1:4963613/93‑1 (MQ=255)

                                                                                  tGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAtct        <  2:5142543/93‑1 (MQ=255)

                                                                                  tGGGTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAtct        >  2:6437703/1‑93 (MQ=255)

                                                                                   gggTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAtctc       >  1:3436332/1‑93 (MQ=255)

                                                                                    ggTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAtctat      >  1:426165/1‑91 (MQ=255)

                                                                                    ggTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATctct      <  2:2925852/93‑1 (MQ=255)

                                                                                     gTAATGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTa     <  1:5457073/93‑1 (MQ=255)

                                                                                       aaTGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTAtt   >  1:4148454/1‑93 (MQ=255)

                                                                                        aTGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTa  <  1:3740796/93‑1 (MQ=255)

                                                                                        aTGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTa  >  1:4824908/1‑93 (MQ=255)

                                                                                        aTGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTa  >  2:6024237/1‑93 (MQ=255)

                                                                                        aTGTTAAAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTa  >  2:2079852/1‑93 (MQ=255)

AGCGGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAACCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTA  >  NC_000913/2008384‑2008563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGATT  >  NC_000913/2008387‑2008573

GGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAA                                                                                                >  SRR4302537.63388/1‑94 (MQ=60)

GGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAA                                                                                                >  SRR4302537.4146623/1‑94 (MQ=60)

  TAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAA‑AC                                                                                             >  SRR4302537.718289/1‑94 (MQ=60)

   AAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAAacc                                                                                             >  SRR4302537.810065/1‑91 (MQ=60)

   AAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAAacc                                                                                             >  SRR4302537.1125604/1‑91 (MQ=60)

     AGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTGCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAG                                                                                           <  SRR4302537.3483551/94‑1 (MQ=60)

     AGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTGAAAA‑CCAG                                                                                           <  SRR4302537.775583/94‑1 (MQ=60)

     AGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAG                                                                                           >  SRR4302537.839772/1‑94 (MQ=60)

     AGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAG                                                                                           >  SRR4302537.3053935/1‑94 (MQ=60)

     AGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAG                                                                                           >  SRR4302537.3809788/1‑94 (MQ=60)

        AGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGC                                                                                        <  SRR4302537.2266560/94‑1 (MQ=60)

        AGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGC                                                                                        <  SRR4302537.5526919/94‑1 (MQ=60)

        AGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGC                                                                                        <  SRR4302537.1195132/94‑1 (MQ=60)

         GCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCG                                                                                       >  SRR4302537.4291167/1‑94 (MQ=60)

         GCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCG                                                                                       >  SRR4302537.2799659/1‑94 (MQ=60)

           CTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCG                                                                                     <  SRR4302537.4680926/94‑1 (MQ=60)

           CTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCG                                                                                     <  SRR4302537.3580585/94‑1 (MQ=60)

           CTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCG                                                                                     >  SRR4302537.3331787/1‑94 (MQ=60)

            TCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGG                                                                                    <  SRR4302537.4170090/94‑1 (MQ=60)

            TCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGG                                                                                    >  SRR4302537.1872065/1‑94 (MQ=60)

             CAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGA                                                                                   <  SRR4302537.3627870/94‑1 (MQ=60)

             CAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGA                                                                                   >  SRR4302537.2121628/1‑94 (MQ=60)

              AGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAG                                                                                  <  SRR4302537.5136856/94‑1 (MQ=60)

              AGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAG                                                                                  >  SRR4302537.5958972/1‑94 (MQ=60)

              AGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAG                                                                                  >  SRR4302537.2710290/1‑94 (MQ=60)

               GAAATCGCGGCCAGTGGCTGTGTTCCAGCAACCCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAACCCAGGGCGCGGAGT                                                                                 <  SRR4302537.1247721/94‑1 (MQ=60)

                AAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTT                                                                                >  SRR4302537.1093030/1‑94 (MQ=60)

                AAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTT                                                                                <  SRR4302537.1076459/94‑1 (MQ=60)

                AAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTT                                                                                <  SRR4302537.1925036/94‑1 (MQ=60)

                AAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTT                                                                                <  SRR4302537.1589327/94‑1 (MQ=60)

                 AATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTA                                                                               >  SRR4302537.1686187/1‑94 (MQ=60)

                   ACGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTCCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAAT                                                                             <  SRR4302537.1470072/94‑1 (MQ=60)

                    CGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATT                                                                            >  SRR4302537.4554159/1‑94 (MQ=60)

                     GCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTC                                                                           <  SRR4302537.5122346/94‑1 (MQ=60)

                     GCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTC                                                                           <  SRR4302537.2755541/94‑1 (MQ=60)

                      CGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCA                                                                          <  SRR4302537.1634410/94‑1 (MQ=60)

                      CGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCA                                                                          >  SRR4302537.3982299/1‑94 (MQ=60)

                          CAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCT                                                                      >  SRR4302537.5333772/1‑94 (MQ=60)

                          CAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGAGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCT                                                                      <  SRR4302537.3497547/94‑1 (MQ=60)

                           AGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTG                                                                     <  SRR4302537.5496397/94‑1 (MQ=60)

                           AGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTG                                                                     <  SRR4302537.2783587/94‑1 (MQ=60)

                           AGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTG                                                                     <  SRR4302537.6322901/94‑1 (MQ=60)

                            GTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGT                                                                    <  SRR4302537.3067139/94‑1 (MQ=60)

                             TGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTT                                                                   <  SRR4302537.1829954/94‑1 (MQ=60)

                              GGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTT                                                                  >  SRR4302537.5375756/1‑94 (MQ=60)

                              GGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTT                                                                  <  SRR4302537.4342501/94‑1 (MQ=60)

                              GGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTT                                                                  <  SRR4302537.3343934/94‑1 (MQ=60)

                               GCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTG                                                                 <  SRR4302537.4513481/94‑1 (MQ=60)

                               GCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTG                                                                 >  SRR4302537.4124509/1‑94 (MQ=60)

                               GCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTG                                                                 <  SRR4302537.5230519/94‑1 (MQ=60)

                               GCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTG                                                                 <  SRR4302537.3413919/94‑1 (MQ=60)

                                 TGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGAT                                                               <  SRR4302537.2729299/94‑1 (MQ=60)

                                    GTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAG                                                            <  SRR4302537.6321814/94‑1 (MQ=60)

                                    GTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAG                                                            <  SRR4302537.5460260/94‑1 (MQ=60)

                                    GTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGAGGAGTTAATTCAACCTGTTTGATAAG                                                            >  SRR4302537.77518/1‑94 (MQ=60)

                                     TTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGC                                                           <  SRR4302537.5067434/94‑1 (MQ=60)

                                     TTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGC                                                           <  SRR4302537.2186117/94‑1 (MQ=60)

                                       CCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCT                                                         <  SRR4302537.2026825/94‑1 (MQ=60)

                                       CCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCT                                                         <  SRR4302537.4217824/94‑1 (MQ=60)

                                       CCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCT                                                         <  SRR4302537.1753132/94‑1 (MQ=60)

                                         AGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGG                                                       >  SRR4302537.1369236/1‑94 (MQ=60)

                                         AGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGG                                                       <  SRR4302537.5397553/94‑1 (MQ=60)

                                          GCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGA                                                      <  SRR4302537.2594948/94‑1 (MQ=60)

                                          GCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGA                                                      >  SRR4302537.6358778/1‑94 (MQ=60)

                                          GCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGA                                                      >  SRR4302537.2355074/1‑94 (MQ=60)

                                          GCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGA                                                      >  SRR4302537.2516471/1‑94 (MQ=60)

                                             AACCAGTTCTGCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGAT                                                   <  SRR4302537.3095559/94‑1 (MQ=60)

                                             AACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGAT                                                   <  SRR4302537.6307260/94‑1 (MQ=60)

                                              ACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAGTTCAACCTGTTTGATAAGCCTGGAGATT                                                  <  SRR4302537.2366221/94‑1 (MQ=60)

                                              ACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATT                                                  <  SRR4302537.5110956/94‑1 (MQ=60)

                                              ACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATT                                                  <  SRR4302537.2606305/94‑1 (MQ=60)

                                               CCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGGTAATTCAACCTGTTTGATAAGCCTGGAGATTA                                                 >  SRR4302537.4598117/1‑94 (MQ=60)

                                                CAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTAT                                                <  SRR4302537.1791952/94‑1 (MQ=60)

                                                 AGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATT                                               >  SRR4302537.3861383/1‑94 (MQ=60)

                                                 AGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATT                                               >  SRR4302537.3610512/1‑94 (MQ=60)

                                                 AGTTCTCCTGGCACACGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATT                                               <  SRR4302537.4254005/94‑1 (MQ=60)

                                                  GTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCATCCTGTTTGATAAGCCTGGAGATTATTG                                              <  SRR4302537.614523/94‑1 (MQ=60)

                                                   TTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGA                                             >  SRR4302537.3935054/1‑94 (MQ=60)

                                                   TTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGA                                             >  SRR4302537.290482/1‑94 (MQ=60)

                                                    TCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGAT                                            >  SRR4302537.2099487/1‑94 (MQ=60)

                                                    TCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGAT                                            <  SRR4302537.5342853/94‑1 (MQ=60)

                                                     CTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATC                                           <  SRR4302537.5207252/94‑1 (MQ=60)

                                                     CTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATC                                           <  SRR4302537.3227338/94‑1 (MQ=60)

                                                     CTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATC                                           >  SRR4302537.4527250/1‑94 (MQ=60)

                                                     CTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATC                                           <  SRR4302537.1968042/94‑1 (MQ=60)

                                                      TCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCA                                          >  SRR4302537.2505143/1‑94 (MQ=60)

                                                       CCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAA                                         >  SRR4302537.5792789/1‑94 (MQ=60)

                                                       CCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAA                                         >  SRR4302537.6059882/1‑94 (MQ=60)

                                                        CTGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAAC                                        >  SRR4302537.4865714/1‑94 (MQ=60)

                                                         TGGCACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACA                                       <  SRR4302537.4404762/94‑1 (MQ=60)

                                                            CACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATA                                    <  SRR4302537.5795464/94‑1 (MQ=60)

                                                            CACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATA                                    <  SRR4302537.4174589/94‑1 (MQ=60)

                                                            CACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATA                                    <  SRR4302537.685135/94‑1 (MQ=60)

                                                            CACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATA                                    <  SRR4302537.1653938/94‑1 (MQ=60)

                                                             ACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATAC                                   >  SRR4302537.457390/1‑94 (MQ=60)

                                                             ACCCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATAC                                   <  SRR4302537.4336878/94‑1 (MQ=60)

                                                               CCGGTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTG                                 <  SRR4302537.2549437/94‑1 (MQ=60)

                                                                 GGTATCGCGCGCGGTGTGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCG                               <  SRR4302537.2279346/94‑1 (MQ=60)

                                                                  GTATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGT                              >  SRR4302537.2088544/1‑94 (MQ=60)

                                                                   TATCGCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTC                             <  SRR4302537.765056/94‑1 (MQ=60)

                                                                       GCGCGCGGTGTGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAA                         <  SRR4302537.3668223/94‑1 (MQ=60)

                                                                       GCGCGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAA                         <  SRR4302537.2192010/94‑1 (MQ=60)

                                                                          CGCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAA                      <  SRR4302537.1107691/94‑1 (MQ=60)

                                                                           GCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAA                     >  SRR4302537.520387/1‑94 (MQ=60)

                                                                           GCGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAA                     >  SRR4302537.1509336/1‑94 (MQ=60)

                                                                            CGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAT                    >  SRR4302537.1601681/1‑94 (MQ=60)

                                                                            CGGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAT                    <  SRR4302537.1781672/94‑1 (MQ=60)

                                                                             GGTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATC                   <  SRR4302537.5758312/94‑1 (MQ=60)

                                                                              GTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCT                  <  SRR4302537.6308714/94‑1 (MQ=60)

                                                                              GTGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCT                  <  SRR4302537.4997830/94‑1 (MQ=60)

                                                                               TGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTC                 >  SRR4302537.3460652/1‑94 (MQ=60)

                                                                               TGGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTC                 >  SRR4302537.6471904/1‑94 (MQ=60)

                                                                                GGGTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTAT                >  SRR4302537.429125/1‑94 (MQ=60)

                                                                                  GTAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTAT              <  SRR4302537.5494295/94‑1 (MQ=60)

                                                                                   TAATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATT             >  SRR4302537.4177406/1‑94 (MQ=60)

                                                                                    AATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTA            >  SRR4302537.4858234/1‑94 (MQ=60)

                                                                                    AATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTA            <  SRR4302537.2565701/94‑1 (MQ=60)

                                                                                     ATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAG           <  SRR4302537.3767069/94‑1 (MQ=60)

                                                                                     ATGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAG           <  SRR4302537.3894701/94‑1 (MQ=60)

                                                                                      TGTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGA          >  SRR4302537.6439754/1‑94 (MQ=60)

                                                                                       GTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGAC         >  SRR4302537.3302173/1‑94 (MQ=60)

                                                                                       GTTAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGAC         <  SRR4302537.2760218/94‑1 (MQ=60)

                                                                                        ttaAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACA        >  SRR4302537.687373/4‑94 (MQ=60)

                                                                                        TA‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAA       >  SRR4302537.368392/1‑94 (MQ=60)

                                                                                             AA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGAT   <  SRR4302537.47301/94‑1 (MQ=60)

                                                                                             AA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGAT   <  SRR4302537.156148/94‑1 (MQ=60)

                                                                                              A‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGATT  <  SRR4302537.6315393/94‑1 (MQ=60)

                                                                                              A‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGATT  >  SRR4302537.384150/1‑94 (MQ=60)

                                                                                              A‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGATT  >  SRR4302537.4357807/1‑94 (MQ=60)

GGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGTT‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGATT  >  NC_000913/2008387‑2008573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`