Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,082,410	T→C	A22A (GCA→GCG)	yeeD ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,082,410	0	T	C	100.0%	763.7 / NA	218	A22A (GCA→GCG)	yeeD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (106/112); total (106/112)

Only 100 of 223 total aligned reads displayed.

TCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCG  >  NC_000913/2082321‑2082499

tatGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAgccgct                                                                                        >  2:1115678/3‑93 (MQ=255)

 ctGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCtt                                                                                       <  1:2874674/93‑1 (MQ=255)

   gccgccCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCAGCTGACCATTTCTGCCAGAGCCGCtttt                                                                                     >  2:1689102/1‑93 (MQ=255)

      gccCACTGTGGGATTGCTTCAGTTGCCTGGGTGCTATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCt                                                                                  <  2:573586/93‑1 (MQ=255)

      gccCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCt                                                                                  >  2:584798/1‑93 (MQ=255)

       cccACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCtt                                                                                 <  2:580036/93‑1 (MQ=255)

        ccACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTc                                                                                <  1:5703876/93‑1 (MQ=255)

          aCTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTa                                                                              <  2:5130507/93‑1 (MQ=255)

           cTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTAt                                                                             >  2:3398722/1‑93 (MQ=255)

           cTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTAt                                                                             >  1:938149/1‑93 (MQ=255)

           cTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTAt                                                                             <  1:4270502/93‑1 (MQ=255)

               gggATTGCTTCAGTTGCCTGGGTTCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGt                                                                         >  1:1547045/1‑93 (MQ=255)

               gggATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGt                                                                         <  1:3935600/93‑1 (MQ=255)

               gggATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGt                                                                         <  1:5546521/93‑1 (MQ=255)

                   ttGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGaa                                                                     >  1:5879609/1‑93 (MQ=255)

                      cTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACg                                                                  <  1:1617774/93‑1 (MQ=255)

                       ttCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACgg                                                                 >  2:4285109/1‑93 (MQ=255)

                       ttCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACgg                                                                 >  1:1270398/1‑93 (MQ=255)

                         cAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGAc                                                               <  1:5240387/93‑1 (MQ=255)

                         cAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGAc                                                               <  1:4202698/93‑1 (MQ=255)

                            ttGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAgc                                                            >  1:252921/1‑92 (MQ=255)

                            ttGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGa                                                            <  2:3858367/93‑1 (MQ=255)

                            gtGCCTCGGTTCAAGCAAACTCGATCCCTAAATCCCTGCCCCATTCCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAgc                                                            <  2:4736551/92‑2 (MQ=255)

                                cTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTg                                                        >  1:1527636/1‑93 (MQ=255)

                                cTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTg                                                        >  2:1514753/1‑93 (MQ=255)

                                 tGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGc                                                       <  1:5441498/93‑1 (MQ=255)

                                  gggTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCg                                                      >  1:831753/1‑93 (MQ=255)

                                   ggTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGt                                                     >  1:3519328/1‑93 (MQ=255)

                                   ggTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGt                                                     <  1:5091713/93‑1 (MQ=255)

                                      gCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTcac                                                  <  1:2160978/93‑1 (MQ=255)

                                         aTCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTcaccac                                               >  2:2087613/1‑93 (MQ=255)

                                         aTCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTcaccac                                               <  2:4079964/93‑1 (MQ=255)

                                         aTCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTcaccac                                               >  2:2846366/1‑93 (MQ=255)

                                          tCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACcaca                                              <  1:4844160/93‑1 (MQ=255)

                                          tCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACcaca                                              >  1:6123920/1‑93 (MQ=255)

                                          tCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACcaca                                              <  2:4640242/93‑1 (MQ=255)

                                           cAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACAt                                             <  2:1238683/93‑1 (MQ=255)

                                            aaaCTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATc                                            <  2:4320049/93‑1 (MQ=255)

                                             aaCTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATcc                                           >  1:3212434/1‑93 (MQ=255)

                                              aCTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCa                                          <  2:771869/93‑1 (MQ=255)

                                                tCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGc                                        <  1:458666/93‑1 (MQ=255)

                                                 cAATCACTACCTCATCGCCGCTGCCCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCt                                       <  2:6318253/93‑1 (MQ=255)

                                                 cAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCt                                       >  1:6031599/1‑93 (MQ=255)

                                                 cAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCt                                       <  1:2723888/93‑1 (MQ=255)

                                                  aaTCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCATCtt                                      <  1:1863213/93‑1 (MQ=255)

                                                    tCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCtttt                                    >  1:6008612/1‑93 (MQ=255)

                                                    tCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCtttt                                    >  2:2367979/1‑93 (MQ=255)

                                                    tCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCttat                                    >  1:1151924/1‑91 (MQ=255)

                                                     cccTAACCCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCttttt                                   <  1:3664900/91‑1 (MQ=255)

                                                     cACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCttttt                                   <  2:320079/93‑1 (MQ=255)

                                                      aCTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTa                                  <  2:424728/93‑1 (MQ=255)

                                                      aCTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTa                                  >  1:1760198/1‑93 (MQ=255)

                                                       cTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTaa                                 <  1:3420615/93‑1 (MQ=255)

                                                       cTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTaa                                 <  2:510949/93‑1 (MQ=255)

                                                        tAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAAt                                <  1:5647768/93‑1 (MQ=255)

                                                        tAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAAt                                >  1:265199/1‑93 (MQ=255)

                                                         aaCTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATc                               <  1:3818361/93‑1 (MQ=255)

                                                         aaCTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATc                               >  2:2114653/1‑93 (MQ=255)

                                                         aaCTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATc                               >  1:77648/1‑93 (MQ=255)

                                                         aaCTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATc                               >  2:2477866/1‑93 (MQ=255)

                                                          aCTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTtcatca                              >  2:4474674/1‑93 (MQ=255)

                                                          aCTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCa                              <  1:839825/93‑1 (MQ=255)

                                                          aCTCATCGCCGCTAACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGTCCTGCGTCACCACATCCAGCTTTTTAATCa                              <  1:6477423/93‑1 (MQ=255)

                                                           cTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCAc                             <  1:4735780/93‑1 (MQ=255)

                                                           cTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCAc                             >  1:3243682/1‑93 (MQ=255)

                                                            tCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTCTTTAATCAcc                            >  2:100012/1‑93 (MQ=255)

                                                             cATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCa                           <  2:1777600/93‑1 (MQ=255)

                                                             cATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCa                           <  1:2553943/93‑1 (MQ=255)

                                                             cATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCa                           >  2:3102140/1‑93 (MQ=255)

                                                              aTCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCAt                          <  2:4790841/93‑1 (MQ=255)

                                                              aTCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCAt                          <  1:790639/93‑1 (MQ=255)

                                                               tCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATc                         >  2:6215147/1‑93 (MQ=255)

                                                                 gccgcTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCtt                       <  1:2639458/93‑1 (MQ=255)

                                                                  ccgcTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCttt                      >  2:2547054/1‑93 (MQ=255)

                                                                  ccgcTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCttt                      >  1:3763472/1‑93 (MQ=255)

                                                                    gcTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTac                    >  1:1203096/1‑93 (MQ=255)

                                                                    gcTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTac                    <  2:3531866/93‑1 (MQ=255)

                                                                    gcTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTac                    >  2:4780050/1‑93 (MQ=255)

                                                                    gcTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTac                    >  1:3439612/1‑93 (MQ=255)

                                                                    gcTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTac                    <  1:2355430/93‑1 (MQ=255)

                                                                       gACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACAcc                 >  2:642667/1‑93 (MQ=255)

                                                                         ccATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACctt               >  1:559528/1‑93 (MQ=255)

                                                                          cATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACctta              >  1:655331/1‑93 (MQ=255)

                                                                          cATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACctta              >  2:2233283/1‑93 (MQ=255)

                                                                          cATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACctta              <  1:6339020/93‑1 (MQ=255)

                                                                           aTTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACcttat             >  1:4158940/1‑92 (MQ=255)

                                                                            tttCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACcttact            <  2:5472451/93‑1 (MQ=255)

                                                                             ttCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACcttactt           <  2:840956/93‑1 (MQ=255)

                                                                              tCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACcttactta          <  1:1443386/93‑1 (MQ=255)

                                                                                tGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAAt        <  2:504177/93‑1 (MQ=255)

                                                                                tGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAAt        <  2:1836108/93‑1 (MQ=255)

                                                                                 gCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAAtt       >  2:3601764/1‑93 (MQ=255)

                                                                                 gCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAACTTTTTAATCACCATCTTTACACCTTACTTAAtt       >  1:2107557/1‑93 (MQ=255)

                                                                                  ccAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAAttt      <  2:5210609/93‑1 (MQ=255)

                                                                                  ccAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAAttt      <  1:2954316/93‑1 (MQ=255)

                                                                                  ccAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAAttt      >  2:4129277/1‑93 (MQ=255)

                                                                                    agagCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGc    >  1:1982873/1‑93 (MQ=255)

                                                                                     gagCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGcc   <  2:130077/93‑1 (MQ=255)

                                                                                     gagCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGcc   <  1:4350724/93‑1 (MQ=255)

                                                                                     gagCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGcc   <  1:2235798/93‑1 (MQ=255)

TCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCG  >  NC_000913/2082321‑2082499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGC  >  NC_000913/2082317‑2082503

cttgttcGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCC                                                                                               <  SRR4302537.2011679/87‑1 (MQ=60)

TTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCC                                                                                               <  SRR4302537.4173514/94‑1 (MQ=60)

TTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCC                                                                                               <  SRR4302537.842048/94‑1 (MQ=60)

 TCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCG                                                                                              >  SRR4302537.989208/1‑94 (MQ=60)

 TCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCG                                                                                              <  SRR4302537.2320558/94‑1 (MQ=60)

     CTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTT                                                                                          <  SRR4302537.1399343/94‑1 (MQ=60)

     CTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTT                                                                                          <  SRR4302537.2894849/94‑1 (MQ=60)

      TGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTT                                                                                         <  SRR4302537.1546926/94‑1 (MQ=60)

       GCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTG                                                                                        <  SRR4302537.2714399/94‑1 (MQ=60)

         CGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCT                                                                                      >  SRR4302537.1275474/1‑94 (MQ=60)

         CGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCT                                                                                      >  SRR4302537.1542980/1‑94 (MQ=60)

          GCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTT                                                                                     <  SRR4302537.4839246/94‑1 (MQ=60)

          GCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTT                                                                                     >  SRR4302537.2333938/1‑94 (MQ=60)

            CCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCT                                                                                   <  SRR4302537.4249248/94‑1 (MQ=60)

            CCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCT                                                                                   <  SRR4302537.5742910/94‑1 (MQ=60)

            CCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCT                                                                                   <  SRR4302537.2659403/94‑1 (MQ=60)

             CACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTA                                                                                  >  SRR4302537.2922436/1‑94 (MQ=60)

             CACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTA                                                                                  >  SRR4302537.3813317/1‑94 (MQ=60)

              ACTGTGGTATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTAT                                                                                 <  SRR4302537.2553883/94‑1 (MQ=60)

              ACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTAT                                                                                 >  SRR4302537.944616/1‑94 (MQ=60)

               CTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATG                                                                                <  SRR4302537.4300171/94‑1 (MQ=60)

               CTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATG                                                                                >  SRR4302537.6381280/1‑94 (MQ=60)

                 GTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAG                                                                              <  SRR4302537.4519717/94‑1 (MQ=60)

                  TGGGATTGCTTCAGTTGCCTGGGTTCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGT                                                                             >  SRR4302537.1557845/1‑94 (MQ=60)

                  TGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGT                                                                             <  SRR4302537.157904/94‑1 (MQ=60)

                   GGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTG                                                                            <  SRR4302537.5584396/94‑1 (MQ=60)

                   GGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTG                                                                            >  SRR4302537.3250114/1‑94 (MQ=60)

                   GGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTG                                                                            <  SRR4302537.3963108/94‑1 (MQ=60)

                    GGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGG                                                                           <  SRR4302537.2420267/94‑1 (MQ=60)

                      ATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAA                                                                         >  SRR4302537.5919947/1‑94 (MQ=60)

                        TGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAAC                                                                       <  SRR4302537.8308/94‑1 (MQ=60)

                         GCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACG                                                                      >  SRR4302537.555708/1‑94 (MQ=60)

                          CTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGG                                                                     <  SRR4302537.2105476/94‑1 (MQ=60)

                          CTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGG                                                                     <  SRR4302537.1629073/94‑1 (MQ=60)

                          CTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGG                                                                     >  SRR4302537.1279231/1‑94 (MQ=60)

                            TCAGTTGCCTGGGTGCAATCAAACTAAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGAC                                                                   <  SRR4302537.2442737/94‑1 (MQ=60)

                             CAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACA                                                                  <  SRR4302537.5276451/94‑1 (MQ=60)

                             CAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACA                                                                  <  SRR4302537.4232038/94‑1 (MQ=60)

                              AGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAG                                                                 <  SRR4302537.308056/94‑1 (MQ=60)

                               GTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGC                                                                >  SRR4302537.254718/1‑94 (MQ=60)

                                TTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGAC                                                               <  SRR4302537.4180677/94‑1 (MQ=60)

                                   CCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTG                                                            >  SRR4302537.1538308/1‑94 (MQ=60)

                                   CCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTG                                                            >  SRR4302537.929553/1‑94 (MQ=60)

                                   CCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTG                                                            >  SRR4302537.6117649/1‑94 (MQ=60)

                                    CTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGC                                                           <  SRR4302537.3541594/94‑1 (MQ=60)

                                    CTAGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGC                                                           <  SRR4302537.5522719/94‑1 (MQ=60)

                                     TGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCG                                                          <  SRR4302537.5478616/94‑1 (MQ=60)

                                     TGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCG                                                          >  SRR4302537.837443/1‑94 (MQ=60)

                                      GGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGT                                                         >  SRR4302537.3544229/1‑94 (MQ=60)

                                       GGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTC                                                        >  SRR4302537.837550/1‑94 (MQ=60)

                                       GGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTC                                                        <  SRR4302537.5126772/94‑1 (MQ=60)

                                          GCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACC                                                     <  SRR4302537.2176214/94‑1 (MQ=60)

                                             ATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACA                                                  <  SRR4302537.3763705/94‑1 (MQ=60)

                                             ATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACA                                                  >  SRR4302537.6448695/1‑94 (MQ=60)

                                             ATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACA                                                  >  SRR4302537.344707/1‑94 (MQ=60)

                                             ATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACA                                                  >  SRR4302537.6166016/1‑94 (MQ=60)

                                              TCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACAT                                                 <  SRR4302537.4877591/94‑1 (MQ=60)

                                               CAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATC                                                >  SRR4302537.5861192/1‑94 (MQ=60)

                                                AAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCC                                               >  SRR4302537.3235033/1‑94 (MQ=60)

                                                  ACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAG                                             <  SRR4302537.3263807/94‑1 (MQ=60)

                                                  ACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAG                                             >  SRR4302537.783650/1‑94 (MQ=60)

                                                    TCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCT                                           >  SRR4302537.2782122/1‑94 (MQ=60)

                                                    TCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCT                                           <  SRR4302537.461828/94‑1 (MQ=60)

                                                    TCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCT                                           >  SRR4302537.6073042/1‑94 (MQ=60)

                                                     CAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTT                                          <  SRR4302537.2742913/94‑1 (MQ=60)

                                                      AATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCATCTTT                                         <  SRR4302537.1876189/94‑1 (MQ=60)

                                                       ATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTT                                        >  SRR4302537.5433035/1‑94 (MQ=60)

                                                       ATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTT                                        >  SRR4302537.6049897/1‑94 (MQ=60)

                                                       ATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTAT                                        >  SRR4302537.1159936/1‑94 (MQ=60)

                                                         CCCTAACCCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTA                                      <  SRR4302537.3690699/94‑1 (MQ=60)

                                                         CACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTA                                      >  SRR4302537.4378439/1‑94 (MQ=60)

                                                         CACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTA                                      >  SRR4302537.1772469/1‑94 (MQ=60)

                                                          ACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAA                                     <  SRR4302537.1965680/94‑1 (MQ=60)

                                                           CTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAAT                                    >  SRR4302537.267061/1‑94 (MQ=60)

                                                           CTAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAAT                                    <  SRR4302537.3444825/94‑1 (MQ=60)

                                                            TAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATC                                   >  SRR4302537.78216/1‑94 (MQ=60)

                                                            TAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATC                                   <  SRR4302537.5686424/94‑1 (MQ=60)

                                                            TAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATC                                   <  SRR4302537.6061405/94‑1 (MQ=60)

                                                            TAACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATC                                   >  SRR4302537.6027235/1‑94 (MQ=60)

                                                             AACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTTCGTCACCACATCCAGCTTTTTAATCA                                  >  SRR4302537.2698872/1‑94 (MQ=60)

                                                             AACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCA                                  <  SRR4302537.3845136/94‑1 (MQ=60)

                                                             AACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCA                                  <  SRR4302537.4736660/94‑1 (MQ=60)

                                                             AACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCA                                  <  SRR4302537.3705000/94‑1 (MQ=60)

                                                              ACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCAC                                 >  SRR4302537.3266543/1‑94 (MQ=60)

                                                              ACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCAC                                 >  SRR4302537.2657317/1‑94 (MQ=60)

                                                              ACTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCAC                                 <  SRR4302537.845579/94‑1 (MQ=60)

                                                              ACTCATCGCCGCTAACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGTCCTGCGTCACCACATCCAGCTTTTTAATCAC                                 <  SRR4302537.6521420/94‑1 (MQ=60)

                                                               CTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACC                                <  SRR4302537.4768508/94‑1 (MQ=60)

                                                               CTCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACC                                >  SRR4302537.732459/1‑94 (MQ=60)

                                                                TCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCA                               <  SRR4302537.3683249/94‑1 (MQ=60)

                                                                TCATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCA                               <  SRR4302537.5610765/94‑1 (MQ=60)

                                                                 CATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCAT                              <  SRR4302537.2571855/94‑1 (MQ=60)

                                                                  ATCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATC                             <  SRR4302537.796068/94‑1 (MQ=60)

                                                                   TCGCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCT                            <  SRR4302537.1480988/94‑1 (MQ=60)

                                                                     GCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTT                          <  SRR4302537.830645/94‑1 (MQ=60)

                                                                     GCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTT                          >  SRR4302537.3789899/1‑94 (MQ=60)

                                                                     GCCGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTT                          <  SRR4302537.2657926/94‑1 (MQ=60)

                                                                       CGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTAC                        >  SRR4302537.3463955/1‑94 (MQ=60)

                                                                       CGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTAC                        >  SRR4302537.6294742/1‑94 (MQ=60)

                                                                       CGCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTAC                        >  SRR4302537.1211464/1‑94 (MQ=60)

                                                                        GCTGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACA                       <  SRR4302537.2372037/94‑1 (MQ=60)

                                                                          TGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACC                     >  SRR4302537.5674453/1‑94 (MQ=60)

                                                                          TGACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCGTTACACC                     >  SRR4302537.5733726/1‑94 (MQ=60)

                                                                           TACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCT                    <  SRR4302537.3317851/94‑1 (MQ=60)

                                                                           GACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCT                    >  SRR4302537.5219553/1‑94 (MQ=60)

                                                                           GACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCT                    <  SRR4302537.1796800/94‑1 (MQ=60)

                                                                            ACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTT                   >  SRR4302537.1201985/1‑94 (MQ=60)

                                                                            ACCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTT                   >  SRR4302537.563380/1‑94 (MQ=60)

                                                                             CCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTA                  >  SRR4302537.4216483/1‑94 (MQ=60)

                                                                             CCATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTA                  >  SRR4302537.659800/1‑94 (MQ=60)

                                                                              CATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTAT                 >  SRR4302537.4187982/1‑94 (MQ=60)

                                                                              CATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTAC                 <  SRR4302537.4192386/94‑1 (MQ=60)

                                                                              CATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTAC                 <  SRR4302537.6382339/94‑1 (MQ=60)

                                                                               ATTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACT                <  SRR4302537.5051103/94‑1 (MQ=60)

                                                                                TTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTTACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTT               >  SRR4302537.1908647/1‑94 (MQ=60)

                                                                                TTTCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTT               >  SRR4302537.3942373/1‑94 (MQ=60)

                                                                                  TCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAA             <  SRR4302537.2140198/94‑1 (MQ=60)

                                                                                  TCTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAA             <  SRR4302537.1453441/94‑1 (MQ=60)

                                                                                   CTGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAAT            >  SRR4302537.464207/1‑94 (MQ=60)

                                                                                    TGCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAACTTTTTAATCACCATCTTTACACCTTACTTAATT           >  SRR4302537.2122413/1‑94 (MQ=60)

                                                                                     GCCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTT          >  SRR4302537.1637051/1‑94 (MQ=60)

                                                                                      CCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTG         >  SRR4302537.657803/1‑94 (MQ=60)

                                                                                      CCAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTG         <  SRR4302537.2975048/94‑1 (MQ=60)

                                                                                       CAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGC        >  SRR4302537.5882977/1‑94 (MQ=60)

                                                                                       CAGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGC        >  SRR4302537.1996652/1‑94 (MQ=60)

                                                                                        AGAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCC       <  SRR4302537.977249/94‑1 (MQ=60)

                                                                                         GAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCG      >  SRR4302537.2189239/1‑94 (MQ=60)

                                                                                         GAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCG      <  SRR4302537.2251565/94‑1 (MQ=60)

                                                                                         GAGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCG      <  SRR4302537.4380864/94‑1 (MQ=60)

                                                                                          AGCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGC     >  SRR4302537.6489340/1‑94 (MQ=60)

                                                                                           GCCGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCA    <  SRR4302537.1197026/94‑1 (MQ=60)

                                                                                             CGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGC  >  SRR4302537.6302689/1‑94 (MQ=60)

                                                                                             CGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGC  >  SRR4302537.3004471/1‑94 (MQ=60)

TTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGC  >  NC_000913/2082317‑2082503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`