Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,084,512 A→G R193R (CGT→CGC)  yeeF ← putative amino acid/amine transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,084,5120AG100.0% 694.8 / NA 202R193R (CGT→CGC) yeeFputative amino acid/amine transport protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (107/95);  total (107/95)

Only 100 of 206 total aligned reads displayed.

GCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGACGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCAA  >  NC_000913/2084422‑2084601
                                                                                          |                                                                                         
gCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCg                                                                                         >  1:2128716/1‑93 (MQ=255)
gCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCg                                                                                         <  2:3586319/93‑1 (MQ=255)
 cTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGa                                                                                        >  1:4466964/1‑93 (MQ=255)
 cTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGa                                                                                        <  2:4560425/93‑1 (MQ=255)
 cTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGa                                                                                        <  2:4594220/93‑1 (MQ=255)
  tGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAg                                                                                       >  2:2039058/1‑93 (MQ=255)
  tGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAg                                                                                       <  2:5396929/93‑1 (MQ=255)
  tGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAg                                                                                       <  1:2666686/93‑1 (MQ=255)
   gATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGt                                                                                      <  2:1145489/93‑1 (MQ=255)
   gATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGt                                                                                      <  1:4917466/93‑1 (MQ=255)
   gATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAAAGGGCGAgg                                                                                      >  2:4928260/1‑92 (MQ=255)
     tGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGc                                                                                    >  1:5305822/1‑93 (MQ=255)
       ccGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTc                                                                                  <  2:77165/93‑1 (MQ=255)
       ccGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTc                                                                                  <  1:2036474/93‑1 (MQ=255)
         gTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGc                                                                                >  1:1626613/1‑93 (MQ=255)
          tCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGcc                                                                               <  2:4700258/93‑1 (MQ=255)
          tCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGcc                                                                               >  1:6294995/1‑93 (MQ=255)
           cAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGGGCTCGCCa                                                                              >  1:6238878/1‑93 (MQ=255)
            aaaGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAg                                                                             <  2:5288404/93‑1 (MQ=255)
             aaGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGc                                                                            >  1:900212/1‑93 (MQ=255)
              aGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCg                                                                           <  2:217242/93‑1 (MQ=255)
                ccGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTa                                                                         <  1:6450111/93‑1 (MQ=255)
                ccGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTa                                                                         >  1:4988297/1‑93 (MQ=255)
                 cGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTAc                                                                        >  2:4239768/1‑93 (MQ=255)
                  ggTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTAcc                                                                       >  2:4327561/1‑93 (MQ=255)
                  ggTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTAcc                                                                       <  1:3683860/93‑1 (MQ=255)
                   gTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCa                                                                      <  2:1639757/93‑1 (MQ=255)
                   gTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCa                                                                      >  2:6106676/1‑93 (MQ=255)
                     aaaGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAgc                                                                    <  2:6264572/93‑1 (MQ=255)
                       aGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAgcgc                                                                  >  1:4701348/1‑93 (MQ=255)
                        ggAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGcc                                                                 >  1:414393/1‑93 (MQ=255)
                        ggAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGcc                                                                 >  1:5114396/1‑93 (MQ=255)
                         gtgaAGNACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGcct                                                                <  1:6202214/91‑1 (MQ=255)
                         gagaAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGcct                                                                >  1:287319/1‑93 (MQ=255)
                         gagaAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGcct                                                                >  1:3583824/1‑93 (MQ=255)
                         gagaAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGcct                                                                <  2:2752948/93‑1 (MQ=255)
                           gaAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGccttc                                                              >  1:5760945/1‑93 (MQ=255)
                                acaGGATTGTCGCCCCGGTAATCATCGGCATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGccttcacctt                                                         <  1:5270901/93‑1 (MQ=255)
                                 caGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGccttcaccttc                                                        >  1:6135606/1‑93 (MQ=255)
                                 caGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGccttcaccttc                                                        >  2:6137738/1‑93 (MQ=255)
                                 caGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGccttcaccttc                                                        >  1:3788036/1‑93 (MQ=255)
                                  aGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGccttcaccttca                                                       >  1:650872/1‑93 (MQ=255)
                                   ggATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCaa                                                      >  2:1399579/1‑93 (MQ=255)
                                   ggATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCaa                                                      >  1:3530856/1‑93 (MQ=255)
                                    gATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGTCTTCACCTTCaaa                                                     <  2:6357095/93‑1 (MQ=255)
                                    gATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCaaa                                                     >  1:1440249/1‑93 (MQ=255)
                                    gATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCaaa                                                     <  1:2831243/93‑1 (MQ=255)
                                     aTTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAAt                                                    <  2:1250183/93‑1 (MQ=255)
                                       tGTCGCCTCGGTAATCATCGGGATAACATGCGCATCGCGAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATAc                                                  <  1:2199864/93‑1 (MQ=255)
                                       tGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATAc                                                  >  2:5110957/1‑93 (MQ=255)
                                         tCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGc                                                <  1:2686074/93‑1 (MQ=255)
                                           gCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCa                                              >  1:5538538/1‑93 (MQ=255)
                                           gCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCa                                              >  1:253710/1‑93 (MQ=255)
                                            ccccGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCAt                                             >  2:3955706/1‑93 (MQ=255)
                                             cccGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATa                                            >  2:5887586/1‑93 (MQ=255)
                                              ccGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATaa                                           >  2:6477190/1‑93 (MQ=255)
                                              ccGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATaa                                           <  2:4879807/93‑1 (MQ=255)
                                               cGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCTAATACGCCATaaa                                          <  1:5403338/93‑1 (MQ=255)
                                               cGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACTCCATaaa                                          <  2:4104825/93‑1 (MQ=255)
                                               cGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATaaa                                          >  2:5680735/1‑93 (MQ=255)
                                               cGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATaaa                                          >  1:3295098/1‑93 (MQ=255)
                                               cGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATaaa                                          >  2:5450360/1‑93 (MQ=255)
                                               cGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATaaa                                          >  2:6064132/1‑93 (MQ=255)
                                                ggTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATaaaa                                         >  1:2399262/1‑92 (MQ=255)
                                                ggTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAaac                                         >  2:2308658/1‑93 (MQ=255)
                                                 gTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAaaca                                        <  1:3189090/93‑1 (MQ=255)
                                                 gTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAaaca                                        >  2:818306/1‑93 (MQ=255)
                                                       atcGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATg                                  >  2:5528403/1‑93 (MQ=255)
                                                       atcGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATg                                  >  2:5768956/1‑93 (MQ=255)
                                                       atcGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATg                                  >  2:186081/1‑93 (MQ=255)
                                                        tcGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGc                                 <  2:3320150/93‑1 (MQ=255)
                                                        tcGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGc                                 <  2:6175887/93‑1 (MQ=255)
                                                            gATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAg                             >  2:1105875/1‑93 (MQ=255)
                                                            gATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAg                             >  1:4674101/1‑93 (MQ=255)
                                                                aCATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATc                         <  2:6423881/93‑1 (MQ=255)
                                                                 cATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCa                        >  2:1967081/1‑93 (MQ=255)
                                                                  aTGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCAc                       <  2:3375702/93‑1 (MQ=255)
                                                                   tGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCAcc                      <  1:1717985/93‑1 (MQ=255)
                                                                      gcATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACcgcg                   >  2:2780264/1‑93 (MQ=255)
                                                                       cATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGa                  <  1:4289847/93‑1 (MQ=255)
                                                                        aTCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCCCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGAt                 >  1:3469966/1‑93 (MQ=255)
                                                                         tCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATc                <  1:4052807/93‑1 (MQ=255)
                                                                         tCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATc                >  2:4829722/1‑93 (MQ=255)
                                                                         tCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATc                >  2:1498167/1‑93 (MQ=255)
                                                                          cGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCa               <  1:2445179/93‑1 (MQ=255)
                                                                           gCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAATCACCATGCCCAGAATCACCGCGATCAg              >  2:1011437/1‑93 (MQ=255)
                                                                           gCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAg              <  2:4805673/93‑1 (MQ=255)
                                                                             cagaccagaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCAACGCGATCAGCa            >  2:6112254/1‑93 (MQ=255)
                                                                              agaccagaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCAc           <  1:4892532/93‑1 (MQ=255)
                                                                              agaccagaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCAc           <  2:3667225/93‑1 (MQ=255)
                                                                               gaccagaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGCTCAGCACt          >  2:1417326/1‑93 (MQ=255)
                                                                               gaccagaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACt          >  2:2223145/1‑93 (MQ=255)
                                                                               gaccagaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACt          >  2:2892085/1‑93 (MQ=255)
                                                                                accagaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTa         >  2:1724946/1‑93 (MQ=255)
                                                                                  cagaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTAcc       >  2:2614459/1‑93 (MQ=255)
                                                                                   agaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCt      >  1:4074388/1‑93 (MQ=255)
                                                                                   agaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCt      >  1:814530/1‑93 (MQ=255)
                                                                                    gaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTg     >  1:1236838/1‑93 (MQ=255)
                                                                                    gaATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTg     >  2:3916088/1‑93 (MQ=255)
                                                                                       tGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCaa  >  1:272180/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGACGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCAA  >  NC_000913/2084422‑2084601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTGCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGACGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCAACAC  >  NC_000913/2084419‑2084604
                                                                                             |                                                                                            
GTTGCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGG                                                                                              <  SRR4302537.5002176/94‑1 (MQ=60)
GTTGCTGATGCCGTCAAAGCCGGTAAACGAGAAGCACAGGATTGTCGCCCCGGTCATCATCGGGATAACAAGCGCATCGCCAGACCAGAATGGG                                                                                              >  SRR4302537.3206068/1‑94 (MQ=60)
  TGCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCG                                                                                            <  SRR4302537.5187581/94‑1 (MQ=60)
  TGCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCG                                                                                            <  SRR4302537.2982239/94‑1 (MQ=60)
  TGCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCG                                                                                            >  SRR4302537.2143689/1‑94 (MQ=60)
   GCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGA                                                                                           <  SRR4302537.2714927/94‑1 (MQ=60)
   GCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGA                                                                                           >  SRR4302537.4497855/1‑94 (MQ=60)
     TGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCTAGT                                                                                         <  SRR4302537.4968026/94‑1 (MQ=60)
     TGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGT                                                                                         <  SRR4302537.2685315/94‑1 (MQ=60)
      GATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTG                                                                                        <  SRR4302537.4951392/94‑1 (MQ=60)
       ATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGC                                                                                       >  SRR4302537.5342285/1‑94 (MQ=60)
       ATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGC                                                                                       >  SRR4302537.432396/1‑94 (MQ=60)
        TGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCT                                                                                      <  SRR4302537.3570240/94‑1 (MQ=60)
          CCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCG                                                                                    <  SRR4302537.2050671/94‑1 (MQ=60)
           CGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGC                                                                                   >  SRR4302537.1637989/1‑94 (MQ=60)
            GTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCC                                                                                  >  SRR4302537.6338121/1‑94 (MQ=60)
             TCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCA                                                                                 >  SRR4302537.2634246/1‑94 (MQ=60)
             TCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGGGCTCGCCA                                                                                 >  SRR4302537.6281773/1‑94 (MQ=60)
              CAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAG                                                                                >  SRR4302537.2695956/1‑94 (MQ=60)
              CAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAG                                                                                >  SRR4302537.5310559/1‑94 (MQ=60)
               AAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGC                                                                               >  SRR4302537.906421/1‑94 (MQ=60)
                 AGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGT                                                                             <  SRR4302537.2123511/94‑1 (MQ=60)
                  GCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTA                                                                            >  SRR4302537.5022671/1‑94 (MQ=60)
                   CCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTAC                                                                           <  SRR4302537.6493853/94‑1 (MQ=60)
                     GGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCA                                                                         <  SRR4302537.3709765/94‑1 (MQ=60)
                       TAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGC                                                                       <  SRR4302537.2173191/94‑1 (MQ=60)
                         AAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGC                                                                     >  SRR4302537.4733869/1‑94 (MQ=60)
                          AGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCC                                                                    >  SRR4302537.5149651/1‑94 (MQ=60)
                          AGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCC                                                                    >  SRR4302537.4089060/1‑94 (MQ=60)
                          AGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCC                                                                    >  SRR4302537.417265/1‑94 (MQ=60)
                           GGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCT                                                                   >  SRR4302537.3609084/1‑94 (MQ=60)
                           GGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCT                                                                   >  SRR4302537.289319/1‑94 (MQ=60)
                            GTGAAGNACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTT                                                                  <  SRR4302537.6244960/94‑1 (MQ=60)
                             AGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTC                                                                 >  SRR4302537.5800408/1‑94 (MQ=60)
                               AAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCAC                                                               <  SRR4302537.6420484/94‑1 (MQ=60)
                                AGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACC                                                              <  SRR4302537.5336379/94‑1 (MQ=60)
                                 GCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCT                                                             <  SRR4302537.4724555/94‑1 (MQ=60)
                                 GCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCT                                                             <  SRR4302537.286599/94‑1 (MQ=60)
                                  CACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTT                                                            <  SRR4302537.5106639/94‑1 (MQ=60)
                                  CACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTT                                                            <  SRR4302537.3545711/94‑1 (MQ=60)
                                   ACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTC                                                           >  SRR4302537.6177786/1‑94 (MQ=60)
                                   ACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTC                                                           >  SRR4302537.3814630/1‑94 (MQ=60)
                                   ACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGCGCGAGTGCTCGCCAGCGCACCAGCGCCTTCACCTTC                                                           >  SRR4302537.3232264/1‑94 (MQ=60)
                                   ACAGGATTGTCGCCCCGGTAATCATCGGCATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTC                                                           <  SRR4302537.5307178/94‑1 (MQ=60)
                                    CAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCA                                                          >  SRR4302537.655306/1‑94 (MQ=60)
                                     AGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAA                                                         >  SRR4302537.3555816/1‑94 (MQ=60)
                                      GGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAA                                                        >  SRR4302537.1450286/1‑94 (MQ=60)
                                       GATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAAT                                                       <  SRR4302537.2851026/94‑1 (MQ=60)
                                       GATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAAT                                                       <  SRR4302537.2486597/94‑1 (MQ=60)
                                        ATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATA                                                      <  SRR4302537.1862080/94‑1 (MQ=60)
                                        ATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATA                                                      >  SRR4302537.4107947/1‑94 (MQ=60)
                                        ATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATA                                                      <  SRR4302537.5779071/94‑1 (MQ=60)
                                         TTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATAC                                                     <  SRR4302537.6498876/94‑1 (MQ=60)
                                          TGTCGCCTCGGTAATCATCGGGATAACATGCGCATCGCGAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACG                                                    <  SRR4302537.2215368/94‑1 (MQ=60)
                                            TCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCC                                                  <  SRR4302537.2704821/94‑1 (MQ=60)
                                             CGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCA                                                 >  SRR4302537.255512/1‑94 (MQ=60)
                                             CGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCA                                                 >  SRR4302537.3417239/1‑94 (MQ=60)
                                             CGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCA                                                 >  SRR4302537.5576345/1‑94 (MQ=60)
                                              GCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGCGTACTCGCCAGCGTACCAGCGCCTTCACCTTCACATACGCCAT                                                >  SRR4302537.3790412/1‑94 (MQ=60)
                                              GCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCAT                                                >  SRR4302537.3654740/1‑94 (MQ=60)
                                              GCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCAT                                                >  SRR4302537.2439325/1‑94 (MQ=60)
                                                 CCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAC                                             >  SRR4302537.4060726/1‑94 (MQ=60)
                                                 CCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAA                                             >  SRR4302537.3318388/1‑94 (MQ=60)
                                                  CGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCTAATACGCCATAAAC                                            <  SRR4302537.5440208/94‑1 (MQ=60)
                                                  CGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAAC                                            <  SRR4302537.4934839/94‑1 (MQ=60)
                                                  CGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAAC                                            <  SRR4302537.6208056/94‑1 (MQ=60)
                                                  CGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAAA                                            >  SRR4302537.2416158/1‑94 (MQ=60)
                                                    GTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAA                                          <  SRR4302537.3211520/94‑1 (MQ=60)
                                                    GTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAA                                          >  SRR4302537.4862566/1‑94 (MQ=60)
                                                     TAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAAC                                         >  SRR4302537.5427774/1‑94 (MQ=60)
                                                       ATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCGCCTTCAAATACGCCATAAACAACCA                                       <  SRR4302537.1482369/94‑1 (MQ=60)
                                                       ATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCA                                       >  SRR4302537.5260815/1‑94 (MQ=60)
                                                         CATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATG                                     >  SRR4302537.281614/1‑94 (MQ=60)
                                                          ATCGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGC                                    >  SRR4302537.3430256/1‑94 (MQ=60)
                                                            CGGGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCC                                  >  SRR4302537.1287861/1‑94 (MQ=60)
                                                              GGATAACATGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAG                                >  SRR4302537.4706435/1‑94 (MQ=60)
                                                                   ACATGCGCATCGCCAGACCATAATGGGCGAGTGCTCGCCAGCGTCCCATCGCCCTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCA                           <  SRR4302537.1997614/94‑1 (MQ=60)
                                                                      TGCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCG                        <  SRR4302537.1729973/94‑1 (MQ=60)
                                                                       GCGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGC                       >  SRR4302537.5005856/1‑94 (MQ=60)
                                                                        CGCATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCG                      >  SRR4302537.844818/1‑94 (MQ=60)
                                                                          CATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGAT                    <  SRR4302537.5996700/94‑1 (MQ=60)
                                                                          CATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGAT                    <  SRR4302537.4319664/94‑1 (MQ=60)
                                                                          CATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCCCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGAT                    >  SRR4302537.3494511/1‑94 (MQ=60)
                                                                           ATCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATC                   <  SRR4302537.4213774/94‑1 (MQ=60)
                                                                            TCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCA                  <  SRR4302537.4081146/94‑1 (MQ=60)
                                                                            TCGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCA                  <  SRR4302537.6323228/94‑1 (MQ=60)
                                                                             CGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAG                 <  SRR4302537.6266044/94‑1 (MQ=60)
                                                                             CGCCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAG                 <  SRR4302537.2462386/94‑1 (MQ=60)
                                                                               CCAGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCA               <  SRR4302537.2960320/94‑1 (MQ=60)
                                                                                 AGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACT             <  SRR4302537.4926313/94‑1 (MQ=60)
                                                                                 AGACCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACT             <  SRR4302537.80777/94‑1 (MQ=60)
                                                                                    CCAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGGCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACC          <  SRR4302537.1677233/94‑1 (MQ=60)
                                                                                     CAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCT         >  SRR4302537.820123/1‑94 (MQ=60)
                                                                                     CAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCT         >  SRR4302537.4102836/1‑94 (MQ=60)
                                                                                     CAGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCT         <  SRR4302537.54838/94‑1 (MQ=60)
                                                                                      AGAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTG        >  SRR4302537.1245443/1‑94 (MQ=60)
                                                                                       GAATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGC       >  SRR4302537.4616101/1‑94 (MQ=60)
                                                                                        AATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCA      >  SRR4302537.954352/1‑94 (MQ=60)
                                                                                         ATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCAA     >  SRR4302537.274093/1‑94 (MQ=60)
                                                                                         ATGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCAA     >  SRR4302537.2241190/1‑94 (MQ=60)
                                                                                          TGGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCAAC    >  SRR4302537.3555131/1‑94 (MQ=60)
                                                                                           GGGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCAACA   <  SRR4302537.6101880/94‑1 (MQ=60)
                                                                                            GGCGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCAACAC  >  SRR4302537.1085867/1‑94 (MQ=60)
                                                                                             |                                                                                            
GTTGCTGATGCCGTCAAAGCCGGTAAAGGAGAAGCACAGGATTGTCGCCCCGGTAATCATCGGGATAACATGCGCATCGCCAGACCAGAATGGACGAGTGCTCGCCAGCGTACCAGCGCCTTCACCTTCAAATACGCCATAAACAACCATGCCCAGAATCACCGCGATCAGCACTACCTGCAACAC  >  NC_000913/2084419‑2084604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑