Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,155,098	T→C	L605P (CTG→CCG)	yegN →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,155,098	0	T	C	100.0%	753.0 / NA	219	L605P (CTG→CCG)	yegN	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (99/120); total (99/120)

Only 100 of 226 total aligned reads displayed.

AGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCTGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATG  >  NC_000913/2155008‑2155187

 ggCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGAc                                                                                        <  1:5654351/93‑1 (MQ=255)

 ggCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGAc                                                                                        >  1:6200442/1‑93 (MQ=255)

 ggCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGAc                                                                                        >  1:1567800/1‑93 (MQ=255)

  gCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCTGGCAGTGCAAAGCCCGAcc                                                                                       <  2:6242490/93‑1 (MQ=255)

   cACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCt                                                                                      <  1:966952/93‑1 (MQ=255)

     ccGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCa                                                                                    <  2:3763452/93‑1 (MQ=255)

        cAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCAttt                                                                                 <  2:1343861/93‑1 (MQ=255)

          aTCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATttgt                                                                               >  2:1479974/1‑93 (MQ=255)

          aTCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATttgt                                                                               >  2:6006625/1‑93 (MQ=255)

          aTCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATttgt                                                                               >  2:1969229/1‑93 (MQ=255)

            ccAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATttgttg                                                                             <  2:323115/93‑1 (MQ=255)

             cAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTgg                                                                            <  1:5487490/93‑1 (MQ=255)

             cAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTgg                                                                            <  1:4586633/93‑1 (MQ=255)

              aGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGATCTCATttgttgtc                                                                           >  1:101664/1‑91 (MQ=255)

              aGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGc                                                                           >  1:265796/1‑93 (MQ=255)

               gCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCg                                                                          >  1:3356574/1‑93 (MQ=255)

               gCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCg                                                                          <  2:1991628/93‑1 (MQ=255)

               gCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGGCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCg                                                                          >  1:879205/1‑93 (MQ=255)

                cTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGt                                                                         <  2:2108081/93‑1 (MQ=255)

                  ccTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTg                                                                       >  1:4922690/1‑93 (MQ=255)

                   cTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGa                                                                      <  2:3578099/93‑1 (MQ=255)

                   cTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGa                                                                      >  1:2127929/1‑93 (MQ=255)

                   cTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGa                                                                      >  2:3428237/1‑93 (MQ=255)

                   cTTTGCCAATATGGCACAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGa                                                                      <  1:5384520/93‑1 (MQ=255)

                    tttGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGAt                                                                     >  2:2854849/1‑93 (MQ=255)

                         cAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCAc                                                                >  2:4136328/1‑93 (MQ=255)

                         cAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCAc                                                                <  1:4981861/93‑1 (MQ=255)

                         cAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCAc                                                                <  2:1538748/93‑1 (MQ=255)

                         cAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCAc                                                                <  1:4483731/93‑1 (MQ=255)

                         cAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCAc                                                                >  2:5247629/1‑93 (MQ=255)

                          aaTATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACt                                                               >  2:2423764/1‑93 (MQ=255)

                           atatGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTa                                                              >  2:486870/1‑93 (MQ=255)

                           atatGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTa                                                              <  2:1750441/93‑1 (MQ=255)

                            tatGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTaa                                                             <  2:2214189/93‑1 (MQ=255)

                            tatGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTaa                                                             <  1:2867918/93‑1 (MQ=255)

                             atGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAAc                                                            >  1:380046/1‑93 (MQ=255)

                              tGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAAcc                                                           <  1:4384229/93‑1 (MQ=255)

                              tGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAAcc                                                           <  1:3989429/93‑1 (MQ=255)

                               ggCCGAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAAccc                                                          <  1:5778979/93‑1 (MQ=255)

                               ggCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAAccc                                                          >  1:1402476/1‑93 (MQ=255)

                                    aGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGc                                                     <  2:294247/93‑1 (MQ=255)

                                     gCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCt                                                    <  1:2059970/93‑1 (MQ=255)

                                      cGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTg                                                   <  1:5869387/93‑1 (MQ=255)

                                        aCAACGGCAGGTCGCGGACGTTATTTTGGAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGaa                                                 <  1:3735003/93‑1 (MQ=255)

                                        aCAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGaa                                                 >  2:5389340/1‑93 (MQ=255)

                                        aCAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGaa                                                 <  1:5736896/93‑1 (MQ=255)

                                            cGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGt                                             <  1:6475939/93‑1 (MQ=255)

                                             gCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTg                                            <  2:4546020/93‑1 (MQ=255)

                                             gCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTg                                            >  1:2708148/1‑93 (MQ=255)

                                              ccAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGc                                           >  2:5778876/1‑93 (MQ=255)

                                               cAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCa                                          >  2:2723876/1‑93 (MQ=255)

                                                aGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCAc                                         >  1:327999/1‑93 (MQ=255)

                                                 ggTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACg                                        <  1:3201108/93‑1 (MQ=255)

                                                   tCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGtt                                      >  1:1913258/1‑93 (MQ=255)

                                                   tCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGtt                                      <  2:6416182/93‑1 (MQ=255)

                                                   tCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCACTGAACAGTGCACGtt                                      <  1:3140918/93‑1 (MQ=255)

                                                     gcgGACGTGATTTTGCGGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTa                                    <  1:2551261/93‑1 (MQ=255)

                                                       ggACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACa                                  >  1:2402665/1‑93 (MQ=255)

                                                       ggACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACa                                  >  1:5180883/1‑93 (MQ=255)

                                                        gACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTACCCCGTCGCTGAACAGTGCACGTTTACaa                                 <  1:527158/93‑1 (MQ=255)

                                                        gACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACaa                                 >  2:4002813/1‑93 (MQ=255)

                                                         aCGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACaaa                                <  1:4199581/93‑1 (MQ=255)

                                                           gTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATc                              <  1:3522937/93‑1 (MQ=255)

                                                           gTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATc                              >  1:4628027/1‑93 (MQ=255)

                                                              aTTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAc                           >  1:1482133/1‑93 (MQ=255)

                                                              aTTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAc                           <  1:6223484/93‑1 (MQ=255)

                                                              aTTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAc                           >  2:2327959/1‑93 (MQ=255)

                                                              aTTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAc                           >  2:1796709/1‑93 (MQ=255)

                                                               ttttGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAcc                          >  1:131181/1‑93 (MQ=255)

                                                               ttttGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAcc                          >  2:2585884/1‑93 (MQ=255)

                                                               ttttGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAcc                          >  1:3437236/1‑93 (MQ=255)

                                                                   gCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCaa                      <  2:4672620/93‑1 (MQ=255)

                                                                     aGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAAc                    <  1:2793255/93‑1 (MQ=255)

                                                                     aGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAAc                    <  2:883461/93‑1 (MQ=255)

                                                                       gATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCg                  >  2:4639147/1‑93 (MQ=255)

                                                                        aTCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGt                 >  1:3669355/1‑93 (MQ=255)

                                                                        aTCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGt                 <  1:5321611/93‑1 (MQ=255)

                                                                          ccGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTg               <  2:5636353/93‑1 (MQ=255)

                                                                          ccGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGCCACTAACCCGTCTCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTg               <  1:4670070/93‑1 (MQ=255)

                                                                            ggCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGa             <  2:4757691/93‑1 (MQ=255)

                                                                            ggCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGa             <  2:706856/93‑1 (MQ=255)

                                                                             gCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGAt            >  1:1627555/1‑93 (MQ=255)

                                                                               atggCAAACCCCGACCTCA‑TCGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGaa         <  1:4302549/90‑1 (MQ=255)

                                                                                gTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGaa         >  1:112125/1‑93 (MQ=255)

                                                                                gTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGaa         <  2:4413965/93‑1 (MQ=255)

                                                                                gTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGaa         >  1:2410724/1‑93 (MQ=255)

                                                                                gTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGaa         >  1:1986461/1‑93 (MQ=255)

                                                                                 tGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAAc        >  2:3355200/1‑93 (MQ=255)

                                                                                  gCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACg       <  2:1178798/93‑1 (MQ=255)

                                                                                  gCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACg       <  1:330755/93‑1 (MQ=255)

                                                                                   cAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGt      <  2:6209944/93‑1 (MQ=255)

                                                                                    aaaGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGtg     >  2:3028337/1‑93 (MQ=255)

                                                                                    aaaGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGtg     >  1:4677314/1‑93 (MQ=255)

                                                                                    aaaGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACAGCACACCATTGAATGAAcaca     >  1:6144668/1‑90 (MQ=255)

                                                                                     aaGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGtga    >  2:3895953/1‑93 (MQ=255)

                                                                                      aGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGtgat   <  2:3184528/93‑1 (MQ=255)

                                                                                      aGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGtgat   >  1:772143/1‑93 (MQ=255)

                                                                                      aGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGtgat   <  2:6265053/93‑1 (MQ=255)

                                                                                      aGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGtgat   <  1:1323566/93‑1 (MQ=255)

                                                                                       gCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGtgatg  >  1:250818/1‑93 (MQ=255)

AGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCTGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATG  >  NC_000913/2155008‑2155187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCAGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCTGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGATCG  >  NC_000913/2155005‑2155191

TGCAGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCC                                                                                               >  SRR4302537.1513335/1‑94 (MQ=60)

TGCAGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCC                                                                                               <  SRR4302537.4376308/94‑1 (MQ=60)

 GCAGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCAAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCG                                                                                              <  SRR4302537.1460386/94‑1 (MQ=60)

   AGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGAC                                                                                            >  SRR4302537.1578738/1‑94 (MQ=60)

   AGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGAC                                                                                            >  SRR4302537.6243174/1‑94 (MQ=60)

   AGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGAC                                                                                            <  SRR4302537.4863864/94‑1 (MQ=60)

    GGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACC                                                                                           <  SRR4302537.5693047/94‑1 (MQ=60)

      CACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTC                                                                                         <  SRR4302537.973619/94‑1 (MQ=60)

        CCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCAT                                                                                       >  SRR4302537.657921/1‑94 (MQ=60)

         CGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATT                                                                                      <  SRR4302537.3924965/94‑1 (MQ=60)

         CGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATT                                                                                      <  SRR4302537.4966163/94‑1 (MQ=60)

         CGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATT                                                                                      <  SRR4302537.2193346/94‑1 (MQ=60)

          GCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTT                                                                                     >  SRR4302537.1349453/1‑94 (MQ=60)

          GCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTT                                                                                     <  SRR4302537.2665144/94‑1 (MQ=60)

          GCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTT                                                                                     <  SRR4302537.5310616/94‑1 (MQ=60)

           CAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTG                                                                                    >  SRR4302537.4317516/1‑94 (MQ=60)

             ATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTT                                                                                  <  SRR4302537.1493901/94‑1 (MQ=60)

               CCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGG                                                                                <  SRR4302537.3310888/94‑1 (MQ=60)

               CCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGG                                                                                >  SRR4302537.1582482/1‑94 (MQ=60)

               CCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGG                                                                                >  SRR4302537.3346396/1‑94 (MQ=60)

                CAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGATCTCATTTGTTGTC                                                                               >  SRR4302537.102394/1‑94 (MQ=60)

                CAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGC                                                                               <  SRR4302537.337636/94‑1 (MQ=60)

                CAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGC                                                                               <  SRR4302537.5524948/94‑1 (MQ=60)

                CAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGC                                                                               <  SRR4302537.2905830/94‑1 (MQ=60)

                CAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGC                                                                               >  SRR4302537.4361263/1‑94 (MQ=60)

                CAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGC                                                                               >  SRR4302537.267664/1‑94 (MQ=60)

                CAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGC                                                                               <  SRR4302537.4618358/94‑1 (MQ=60)

                 AGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCG                                                                              >  SRR4302537.1165525/1‑94 (MQ=60)

                 AGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCG                                                                              >  SRR4302537.3380351/1‑94 (MQ=60)

                 AGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGGCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCG                                                                              >  SRR4302537.885255/1‑94 (MQ=60)

                   CTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGGCCGACCTCATTTGTGGGCGTT                                                                            >  SRR4302537.701681/1‑94 (MQ=60)

                   CTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTT                                                                            <  SRR4302537.4683568/94‑1 (MQ=60)

                    TCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTG                                                                           >  SRR4302537.3423860/1‑94 (MQ=60)

                    TCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTG                                                                           >  SRR4302537.4956639/1‑94 (MQ=60)

                     CCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGA                                                                          >  SRR4302537.2142894/1‑94 (MQ=60)

                     CCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGA                                                                          <  SRR4302537.4502176/94‑1 (MQ=60)

                     CCTGTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGA                                                                          <  SRR4302537.5571023/94‑1 (MQ=60)

                      CTTTGCCAATATGGCACAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGAT                                                                         <  SRR4302537.5421332/94‑1 (MQ=60)

                       TTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATG                                                                        <  SRR4302537.260589/94‑1 (MQ=60)

                          GCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCA                                                                     <  SRR4302537.1655329/94‑1 (MQ=60)

                          GCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCA                                                                     <  SRR4302537.1330192/94‑1 (MQ=60)

                          GCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCA                                                                     <  SRR4302537.3010328/94‑1 (MQ=60)

                           CCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCAC                                                                    <  SRR4302537.3628223/94‑1 (MQ=60)

                            CAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACT                                                                   >  SRR4302537.4650163/1‑94 (MQ=60)

                            CAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACT                                                                   <  SRR4302537.4514748/94‑1 (MQ=60)

                            CAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACT                                                                   <  SRR4302537.5016197/94‑1 (MQ=60)

                             AATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTA                                                                  <  SRR4302537.451870/94‑1 (MQ=60)

                             AATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTA                                                                  >  SRR4302537.5482923/1‑94 (MQ=60)

                             AATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTA                                                                  >  SRR4302537.844181/1‑94 (MQ=60)

                               TATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAAC                                                                <  SRR4302537.2888047/94‑1 (MQ=60)

                               TATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAAC                                                                >  SRR4302537.382679/1‑94 (MQ=60)

                                 TGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCC                                                              <  SRR4302537.4017366/94‑1 (MQ=60)

                                 TGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCC                                                              <  SRR4302537.4414484/94‑1 (MQ=60)

                                 TGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCC                                                              >  SRR4302537.1412244/1‑94 (MQ=60)

                                  GGCCGAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCG                                                             <  SRR4302537.5818590/94‑1 (MQ=60)

                                  GGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCG                                                             <  SRR4302537.6073426/94‑1 (MQ=60)

                                  GGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCG                                                             <  SRR4302537.1727679/94‑1 (MQ=60)

                                    CCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTC                                                           <  SRR4302537.1122040/94‑1 (MQ=60)

                                     CCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCG                                                          >  SRR4302537.2562230/1‑94 (MQ=60)

                                     CCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCG                                                          >  SRR4302537.5379672/1‑94 (MQ=60)

                                       AGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCT                                                        >  SRR4302537.4104973/1‑94 (MQ=60)

                                       AGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCT                                                        >  SRR4302537.1436290/1‑94 (MQ=60)

                                        GCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTG                                                       <  SRR4302537.2074431/94‑1 (MQ=60)

                                         CGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGA                                                      <  SRR4302537.5909650/94‑1 (MQ=60)

                                           ACAACGGCAGGTCGCGGACGTTATTTTGGAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAAC                                                    <  SRR4302537.3761238/94‑1 (MQ=60)

                                           ACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAAC                                                    <  SRR4302537.5776173/94‑1 (MQ=60)

                                           ACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAAC                                                    >  SRR4302537.6054189/1‑94 (MQ=60)

                                             AACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAAAAG                                                  <  SRR4302537.5317090/94‑1 (MQ=60)

                                              ACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGT                                                 <  SRR4302537.5797623/94‑1 (MQ=60)

                                               CGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTG                                                <  SRR4302537.2072725/94‑1 (MQ=60)

                                               CGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTG                                                >  SRR4302537.2727061/1‑94 (MQ=60)

                                               CGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTG                                                <  SRR4302537.6519909/94‑1 (MQ=60)

                                                 GCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCA                                              <  SRR4302537.2426683/94‑1 (MQ=60)

                                                  CAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCAC                                             >  SRR4302537.330275/1‑94 (MQ=60)

                                                    GGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGT                                           <  SRR4302537.3223613/94‑1 (MQ=60)

                                                     GTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTT                                          >  SRR4302537.1926539/1‑94 (MQ=60)

                                                     GTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTT                                          >  SRR4302537.2803391/1‑94 (MQ=60)

                                                      TCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTT                                         <  SRR4302537.1980527/94‑1 (MQ=60)

                                                      TCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCACTGAACAGTGCACGTTT                                         <  SRR4302537.3162960/94‑1 (MQ=60)

                                                       CGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTA                                        >  SRR4302537.4545155/1‑94 (MQ=60)

                                                        GCGGACGTGATTTTGCGGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTAC                                       <  SRR4302537.2569129/94‑1 (MQ=60)

                                                         CGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACA                                      >  SRR4302537.5216534/1‑94 (MQ=60)

                                                         CGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACA                                      >  SRR4302537.2419582/1‑94 (MQ=60)

                                                          GGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAA                                     <  SRR4302537.2452169/94‑1 (MQ=60)

                                                          GGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAA                                     <  SRR4302537.133944/94‑1 (MQ=60)

                                                           GACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTACCCCGTCGCTGAACAGTGCACGTTTACAAA                                    <  SRR4302537.530772/94‑1 (MQ=60)

                                                            ACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAAT                                   <  SRR4302537.4228904/94‑1 (MQ=60)

                                                             CGTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATC                                  >  SRR4302537.4660047/1‑94 (MQ=60)

                                                              GTGATTTTGCAGGATCCGGCAGTGCAAAGTCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCA                                 >  SRR4302537.5716570/1‑94 (MQ=60)

                                                              GTGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCA                                 <  SRR4302537.3547859/94‑1 (MQ=60)

                                                               TGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAA                                <  SRR4302537.3173443/94‑1 (MQ=60)

                                                               TGATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAA                                >  SRR4302537.4718403/1‑94 (MQ=60)

                                                                GATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAC                               >  SRR4302537.3290595/1‑94 (MQ=60)

                                                                GATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAC                               <  SRR4302537.5273470/94‑1 (MQ=60)

                                                                GATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAC                               >  SRR4302537.1492442/1‑94 (MQ=60)

                                                                GATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAAC                               >  SRR4302537.4709282/1‑94 (MQ=60)

                                                                 ATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACC                              >  SRR4302537.132108/1‑94 (MQ=60)

                                                                 ATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACC                              >  SRR4302537.3461560/1‑94 (MQ=60)

                                                                 ATTTTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACC                              <  SRR4302537.6266318/94‑1 (MQ=60)

                                                                    TTGCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCA                           <  SRR4302537.5866538/94‑1 (MQ=60)

                                                                      GCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAA                         >  SRR4302537.5195978/1‑94 (MQ=60)

                                                                      GCAGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAA                         <  SRR4302537.3546483/94‑1 (MQ=60)

                                                                        AGGATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACC                       <  SRR4302537.2812777/94‑1 (MQ=60)

                                                                          GATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGT                     >  SRR4302537.3695173/1‑94 (MQ=60)

                                                                           ATCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTT                    <  SRR4302537.5358135/94‑1 (MQ=60)

                                                                            TCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTG                   <  SRR4302537.573506/94‑1 (MQ=60)

                                                                            TCCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTG                   >  SRR4302537.2720398/1‑94 (MQ=60)

                                                                             CCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGG                  <  SRR4302537.2873770/94‑1 (MQ=60)

                                                                             CCGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGCCACTAACCCGTCTCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGG                  <  SRR4302537.4702380/94‑1 (MQ=60)

                                                                              CGGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGA                 >  SRR4302537.6491863/1‑94 (MQ=60)

                                                                               GGCAGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGAT                >  SRR4302537.1638933/1‑94 (MQ=60)

                                                                                  AGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAA             >  SRR4302537.2000271/1‑94 (MQ=60)

                                                                                  AGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAA             >  SRR4302537.2363520/1‑94 (MQ=60)

                                                                                  AGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAA             >  SRR4302537.2427699/1‑94 (MQ=60)

                                                                                  AGTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAA             >  SRR4302537.112945/1‑94 (MQ=60)

                                                                                   GTGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAAC            <  SRR4302537.3635138/94‑1 (MQ=60)

                                                                                    TGCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACG           <  SRR4302537.941965/94‑1 (MQ=60)

                                                                                     GCAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGT          <  SRR4302537.333049/94‑1 (MQ=60)

                                                                                      CAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACagcacaccattgaatgaacaca         >  SRR4302537.6186923/1‑72 (MQ=60)

                                                                                      CAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTG         <  SRR4302537.2098425/94‑1 (MQ=60)

                                                                                      CAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTG         >  SRR4302537.6234323/1‑94 (MQ=60)

                                                                                      CAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTG         >  SRR4302537.4709672/1‑94 (MQ=60)

                                                                                      CAAAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTG         <  SRR4302537.4045247/94‑1 (MQ=60)

                                                                                        AAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGAT       >  SRR4302537.3708308/1‑94 (MQ=60)

                                                                                        AAGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGAT       >  SRR4302537.777434/1‑94 (MQ=60)

                                                                                         AGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATG      >  SRR4302537.6255769/1‑94 (MQ=60)

                                                                                         AGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATG      >  SRR4302537.252600/1‑94 (MQ=60)

                                                                                         AGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATG      <  SRR4302537.377109/94‑1 (MQ=60)

                                                                                         AGCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATG      <  SRR4302537.1332793/94‑1 (MQ=60)

                                                                                          GCCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGA     >  SRR4302537.3054849/1‑94 (MQ=60)

                                                                                           CCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGAT    <  SRR4302537.5010674/94‑1 (MQ=60)

                                                                                           CCCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGAT    >  SRR4302537.5773903/1‑94 (MQ=60)

                                                                                            CCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGATC   <  SRR4302537.6414020/94‑1 (MQ=60)

                                                                                            CCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGATC   >  SRR4302537.3533555/1‑94 (MQ=60)

                                                                                            CCGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGATC   <  SRR4302537.3011672/94‑1 (MQ=60)

                                                                                             CGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGATCG  <  SRR4302537.1581766/94‑1 (MQ=60)

                                                                                             CGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGATCG  <  SRR4302537.3355959/94‑1 (MQ=60)

TGCAGGCACCGCAATCCAGCTCCTTTGCCAATATGGCCCAGCGACAACGCCAGGTCGCGGACGTGATTTTGCAGGATCCGGCAGTGCAAAGCCTGACCTCATTTGTTGGCGTTGATGGCACTAACCCGTCGCTGAACAGTGCACGTTTACAAATCAACCTCAAACCGTTGGATGAACGTGATGATCG  >  NC_000913/2155005‑2155191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`