Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,332,579	A→G	L134P (CTG→CCG)	b2229 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,332,579	0	A	G	100.0%	698.4 / NA	202	L134P (CTG→CCG)	b2229	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (79/123); total (79/123)

Only 100 of 210 total aligned reads displayed.

GCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCC  >  NC_000913/2332489‑2332668

  gcTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCAAGGCGgcgc                                                                                       <  1:2859455/93‑1 (MQ=255)

   cTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGcc                                                                                      >  1:1001942/1‑93 (MQ=255)

   cTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGcc                                                                                      <  1:4622776/93‑1 (MQ=255)

    ttCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCt                                                                                     >  2:3169057/1‑93 (MQ=255)

     tCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTg                                                                                    <  1:1355222/93‑1 (MQ=255)

     tCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTg                                                                                    <  1:4369625/93‑1 (MQ=255)

     tCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTg                                                                                    <  2:2001319/93‑1 (MQ=255)

      ccGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTgg                                                                                   <  1:4456165/93‑1 (MQ=255)

      ccGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTgg                                                                                   >  2:4658972/1‑93 (MQ=255)

       cGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGt                                                                                  <  1:5712769/93‑1 (MQ=255)

         gtgtGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGttt                                                                                >  2:6381097/1‑93 (MQ=255)

          tgtgGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTa                                                                               <  1:4210323/93‑1 (MQ=255)

          ggtgGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTa                                                                               <  1:2994380/92‑1 (MQ=255)

           gtgGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTAt                                                                              <  2:2709602/93‑1 (MQ=255)

           gtgGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTAt                                                                              <  2:276528/93‑1 (MQ=255)

           gtgGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTAt                                                                              <  1:2483083/93‑1 (MQ=255)

            tgGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATg                                                                             >  1:891691/1‑93 (MQ=255)

               tAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTcc                                                                          >  2:203812/1‑93 (MQ=255)

                 gATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTg                                                                        <  1:625834/93‑1 (MQ=255)

                 gATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTg                                                                        >  2:3584737/1‑93 (MQ=255)

                 gATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTg                                                                        <  2:2310151/93‑1 (MQ=255)

                 gATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTg                                                                        <  1:2762960/93‑1 (MQ=255)

                   tGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGc                                                                      >  1:3194968/1‑93 (MQ=255)

                   tGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGc                                                                      <  1:680832/93‑1 (MQ=255)

                    gACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGcc                                                                     <  2:1870188/93‑1 (MQ=255)

                      cGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCaa                                                                   <  1:2190503/93‑1 (MQ=255)

                      cGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCaa                                                                   <  2:3304771/93‑1 (MQ=255)

                        tAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATa                                                                 >  2:5303425/1‑93 (MQ=255)

                        tAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATa                                                                 >  1:5593901/1‑93 (MQ=255)

                        tAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATa                                                                 >  1:3477287/1‑93 (MQ=255)

                         aaCGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATaa                                                                <  1:3109302/93‑1 (MQ=255)

                          aCGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGAGCGAAAAAAATCATATCGCCAGGCGGCGGCTGGTTTATGTCCTGGTCAATaaa                                                               >  2:87532/1‑93 (MQ=255)

                           cGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAAc                                                              <  2:6202333/93‑1 (MQ=255)

                            gCCCCATCCAGACCATTAAGTGCTGGGCATCGCCGTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACt                                                             <  1:5888237/93‑1 (MQ=255)

                            gCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACt                                                             <  2:1707872/93‑1 (MQ=255)

                            gCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACt                                                             <  2:3225605/93‑1 (MQ=255)

                              cccATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTgg                                                           >  2:2383157/1‑93 (MQ=255)

                               ccATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGc                                                          <  2:402312/93‑1 (MQ=255)

                               ccATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGc                                                          <  2:2183060/93‑1 (MQ=255)

                                cATCCAGACCATTAAGTGCTGGGCTTCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCt                                                         >  1:5029859/1‑93 (MQ=255)

                                cATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCt                                                         >  2:1520320/1‑93 (MQ=255)

                                   ccAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCtgtt                                                      <  1:737606/93‑1 (MQ=255)

                                    cAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCtgttg                                                     >  1:1909071/1‑93 (MQ=255)

                                      gACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTa                                                   <  2:5622757/93‑1 (MQ=255)

                                      gACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTa                                                   >  1:3410684/1‑93 (MQ=255)

                                          aTTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGa                                               >  1:4533480/1‑93 (MQ=255)

                                          aTTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGa                                               >  2:4490043/1‑93 (MQ=255)

                                           ttAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGaa                                              >  2:252874/1‑93 (MQ=255)

                                           ttAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGaa                                              <  1:1577064/93‑1 (MQ=255)

                                           ttAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGaa                                              >  2:1232842/1‑93 (MQ=255)

                                            tAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAAt                                             <  1:4507736/93‑1 (MQ=255)

                                              aGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCa                                           >  2:5924238/1‑93 (MQ=255)

                                                tGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCaaa                                         <  2:2582146/93‑1 (MQ=255)

                                                 gCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAAt                                        <  1:1679564/93‑1 (MQ=255)

                                                  cTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAAtt                                       <  2:5756550/93‑1 (MQ=255)

                                                   tGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTa                                      >  1:4797011/1‑93 (MQ=255)

                                                    gggCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTaa                                     >  2:6219621/1‑93 (MQ=255)

                                                    gggCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTAGCTGTTGTACTGAATCAAATTaa                                     <  2:2100933/93‑1 (MQ=255)

                                                     ggCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAAt                                    <  1:1256430/93‑1 (MQ=255)

                                                      gCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATc                                   <  2:4736045/93‑1 (MQ=255)

                                                      gCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATc                                   <  2:2598879/93‑1 (MQ=255)

                                                        aTCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATcgc                                 <  1:1305626/93‑1 (MQ=255)

                                                        aTCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATcgc                                 <  2:3557450/93‑1 (MQ=255)

                                                         tCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATcgcg                                >  1:2678186/1‑93 (MQ=255)

                                                         tCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATcgcg                                <  1:408438/93‑1 (MQ=255)

                                                           gCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGt                              <  2:1190221/93‑1 (MQ=255)

                                                           gCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGt                              >  1:1848347/1‑93 (MQ=255)

                                                            cccTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTc                             >  1:2091686/1‑93 (MQ=255)

                                                             ccTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTca                            <  1:5829987/93‑1 (MQ=255)

                                                             ccTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTca                            <  1:6143594/93‑1 (MQ=255)

                                                             ccTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTca                            <  1:6154748/93‑1 (MQ=255)

                                                             ccTGATCGAAAAAAATCATATCGCCAGGCGGAGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTca                            >  1:5584502/1‑93 (MQ=255)

                                                              cTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTcac                           <  2:2945058/93‑1 (MQ=255)

                                                               tGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTcaca                          <  1:230747/93‑1 (MQ=255)

                                                                gATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCTCAt                         <  2:4385310/93‑1 (MQ=255)

                                                                 aTCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATa                        <  1:567563/93‑1 (MQ=255)

                                                                  tCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAg                       <  2:5352596/93‑1 (MQ=255)

                                                                   cGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAgg                      <  2:1603685/93‑1 (MQ=255)

                                                                    gAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTGACATAggg                     >  2:4307881/1‑93 (MQ=255)

                                                                    gAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAggg                     <  2:2702186/93‑1 (MQ=255)

                                                                    gAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAggg                     >  2:5128576/1‑93 (MQ=255)

                                                                     aaaaaaaTCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAgggg                    >  1:5297048/1‑93 (MQ=255)

                                                                     aaaaaaaTCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAgggg                    >  1:6371838/1‑93 (MQ=255)

                                                                       aaaaaTCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGcc                  >  2:366680/1‑93 (MQ=255)

                                                                       aaaaaTCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGcc                  <  2:753864/93‑1 (MQ=255)

                                                                       aaaaaTCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGcc                  <  1:6215842/93‑1 (MQ=255)

                                                                        aaaaTCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCg                 >  2:5471833/1‑93 (MQ=255)

                                                                         aaaTCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCgg                >  2:3057502/1‑93 (MQ=255)

                                                                           aTCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGtt              <  2:3840821/93‑1 (MQ=255)

                                                                            tCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGttt             <  1:3974250/93‑1 (MQ=255)

                                                                               tatCGCCATGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTcc          >  2:6309482/1‑93 (MQ=255)

                                                                               tatCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTcc          >  2:5789693/1‑93 (MQ=255)

                                                                                 tCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCg        >  1:545528/1‑93 (MQ=255)

                                                                                 tCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCg        >  1:5395297/1‑93 (MQ=255)

                                                                                   cccAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGtt      <  2:3244484/92‑1 (MQ=255)

                                                                                    ccAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTc     <  1:360973/93‑1 (MQ=255)

                                                                                    ccAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTc     <  1:2841516/93‑1 (MQ=255)

                                                                                     cAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTcc    >  2:4826087/1‑93 (MQ=255)

                                                                                       ggcggcGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTcccc  <  1:3320260/93‑1 (MQ=255)

                                                                                       ggcggcGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGATGTACTGAATCAAATTAATCGCGGTCACATAGGGGGCGGTTTTCACGTTcctc  >  2:1113859/1‑91 (MQ=255)

GCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCC  >  NC_000913/2332489‑2332668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCTGA  >  NC_000913/2332488‑2332671

GGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGC                                                                                            >  SRR4302537.2256799/1‑94 (MQ=60)

GGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGC                                                                                            <  SRR4302537.2176894/94‑1 (MQ=60)

   GCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCC                                                                                         >  SRR4302537.1008854/1‑94 (MQ=60)

   GCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCC                                                                                         >  SRR4302537.5681391/1‑94 (MQ=60)

   GCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCAAGGCGGCGCC                                                                                         <  SRR4302537.2879505/94‑1 (MQ=60)

    CTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCT                                                                                        <  SRR4302537.4654774/94‑1 (MQ=60)

     TTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTG                                                                                       <  SRR4302537.4098982/94‑1 (MQ=60)

      TCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGG                                                                                      <  SRR4302537.1364666/94‑1 (MQ=60)

      TCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGG                                                                                      <  SRR4302537.4399823/94‑1 (MQ=60)

       CCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGT                                                                                     <  SRR4302537.4486938/94‑1 (MQ=60)

        CGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTT                                                                                    <  SRR4302537.5751869/94‑1 (MQ=60)

          GTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTT                                                                                  >  SRR4302537.5892245/1‑94 (MQ=60)

          GTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTA                                                                                  >  SRR4302537.5717678/1‑94 (MQ=60)

           TGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTAT                                                                                 <  SRR4302537.4239692/94‑1 (MQ=60)

           GGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTAT                                                                                 <  SRR4302537.3015267/94‑1 (MQ=60)

            GTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATG                                                                                >  SRR4302537.897834/1‑94 (MQ=60)

            GTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATG                                                                                <  SRR4302537.2500541/94‑1 (MQ=60)

              GGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTC                                                                              >  SRR4302537.6355652/1‑94 (MQ=60)

                  GATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGG                                                                          <  SRR4302537.356348/94‑1 (MQ=60)

                  GATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGG                                                                          <  SRR4302537.630099/94‑1 (MQ=60)

                  GATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGG                                                                          <  SRR4302537.2782236/94‑1 (MQ=60)

                   ATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGC                                                                         >  SRR4302537.3217432/1‑94 (MQ=60)

                    TGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCC                                                                        <  SRR4302537.685498/94‑1 (MQ=60)

                       CGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAAT                                                                     <  SRR4302537.2205933/94‑1 (MQ=60)

                       CGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAAT                                                                     <  SRR4302537.5461427/94‑1 (MQ=60)

                        GTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATA                                                                    >  SRR4302537.5632147/1‑94 (MQ=60)

                        GTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATA                                                                    >  SRR4302537.3812907/1‑94 (MQ=60)

                        GTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATA                                                                    <  SRR4302537.3121340/94‑1 (MQ=60)

                        GTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATA                                                                    >  SRR4302537.3501895/1‑94 (MQ=60)

                          AACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAA                                                                  <  SRR4302537.6420305/94‑1 (MQ=60)

                          AACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAA                                                                  <  SRR4302537.3131019/94‑1 (MQ=60)

                            CGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACT                                                                >  SRR4302537.5628056/1‑94 (MQ=60)

                             GCCCCATCCAGACCATTAAGTGCTGGGCATCGCCGTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTG                                                               <  SRR4302537.5928639/94‑1 (MQ=60)

                               CCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGC                                                             <  SRR4302537.4650123/94‑1 (MQ=60)

                                CCATCCAGACCATTAAGTGCTGGGCTTCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCT                                                            >  SRR4302537.5064490/1‑94 (MQ=60)

                                 CATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTG                                                           <  SRR4302537.744346/94‑1 (MQ=60)

                                 CATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCAAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTG                                                           <  SRR4302537.1950641/94‑1 (MQ=60)

                                  ATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGT                                                          <  SRR4302537.2653053/94‑1 (MQ=60)

                                  ATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGT                                                          >  SRR4302537.5373749/1‑94 (MQ=60)

                                    CCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTG                                                        <  SRR4302537.2333881/94‑1 (MQ=60)

                                    CCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTG                                                        <  SRR4302537.742635/94‑1 (MQ=60)

                                    CCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTG                                                        >  SRR4302537.1922324/1‑94 (MQ=60)

                                      AGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTA                                                      >  SRR4302537.3434840/1‑94 (MQ=60)

                                       GACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTAC                                                     <  SRR4302537.1712018/94‑1 (MQ=60)

                                        ACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACT                                                    <  SRR4302537.1299670/94‑1 (MQ=60)

                                         CCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTG                                                   <  SRR4302537.2942662/94‑1 (MQ=60)

                                         CCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTG                                                   <  SRR4302537.4131757/94‑1 (MQ=60)

                                          CATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGA                                                  >  SRR4302537.4564871/1‑94 (MQ=60)

                                            TTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAAT                                                >  SRR4302537.4990784/1‑94 (MQ=60)

                                            TTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAAT                                                <  SRR4302537.1588060/94‑1 (MQ=60)

                                             TAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATC                                               <  SRR4302537.4538908/94‑1 (MQ=60)

                                              AAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCA                                              <  SRR4302537.5505779/94‑1 (MQ=60)

                                              AAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCA                                              <  SRR4302537.6232325/94‑1 (MQ=60)

                                              AAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCA                                              <  SRR4302537.4590409/94‑1 (MQ=60)

                                                GTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGNCCAATAAACTGGCTGTNGTACNGNANCNAA                                            >  SRR4302537.198824/1‑94 (MQ=60)

                                                 TACTGGACATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAAT                                           <  SRR4302537.1689672/94‑1 (MQ=60)

                                                  GCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATT                                          <  SRR4302537.1691315/94‑1 (MQ=60)

                                                   CTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTA                                         >  SRR4302537.4830113/1‑94 (MQ=60)

                                                   CTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTA                                         >  SRR4302537.2152015/1‑94 (MQ=60)

                                                      GGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATC                                      <  SRR4302537.3426977/94‑1 (MQ=60)

                                                      GGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATC                                      <  SRR4302537.1265173/94‑1 (MQ=60)

                                                      GGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATC                                      <  SRR4302537.4403602/94‑1 (MQ=60)

                                                      GGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATC                                      >  SRR4302537.5819644/1‑94 (MQ=60)

                                                      GGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATC                                      <  SRR4302537.2281704/94‑1 (MQ=60)

                                                      GGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATC                                      <  SRR4302537.1331488/94‑1 (MQ=60)

                                                       GCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCG                                     <  SRR4302537.3337525/94‑1 (MQ=60)

                                                        CATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGC                                    >  SRR4302537.117873/1‑94 (MQ=60)

                                                        CATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGC                                    >  SRR4302537.6192117/1‑94 (MQ=60)

                                                         ATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCG                                   <  SRR4302537.1314700/94‑1 (MQ=60)

                                                         ATCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCG                                   >  SRR4302537.2696888/1‑94 (MQ=60)

                                                          TCGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGG                                  <  SRR4302537.411267/94‑1 (MQ=60)

                                                           CGCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGT                                 >  SRR4302537.1861202/1‑94 (MQ=60)

                                                            GCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTC                                >  SRR4302537.2106436/1‑94 (MQ=60)

                                                            GCCCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGCTTATGTCCTGGCCAATAAACTGGCTGATGTACTGAATCAAATTAATCGCGGTC                                >  SRR4302537.3157801/1‑94 (MQ=60)

                                                             CCCTGATCGAAAAAAATCATATCGCCAGGCGGAGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCA                               >  SRR4302537.5622681/1‑94 (MQ=60)

                                                              CCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCAC                              <  SRR4302537.5869946/94‑1 (MQ=60)

                                                              CCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCAC                              <  SRR4302537.6185837/94‑1 (MQ=60)

                                                              CCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCAC                              <  SRR4302537.6197093/94‑1 (MQ=60)

                                                              CCTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATCTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCAC                              >  SRR4302537.3486346/1‑94 (MQ=60)

                                                               CTGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACA                             >  SRR4302537.3135595/1‑94 (MQ=60)

                                                                TGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACAT                            <  SRR4302537.232376/94‑1 (MQ=60)

                                                                TGATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACAT                            <  SRR4302537.1540371/94‑1 (MQ=60)

                                                                 GATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATA                           >  SRR4302537.1920817/1‑94 (MQ=60)

                                                                 GATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATA                           <  SRR4302537.4334518/94‑1 (MQ=60)

                                                                 GATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATA                           >  SRR4302537.4496238/1‑94 (MQ=60)

                                                                  ATCGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAG                          <  SRR4302537.571467/94‑1 (MQ=60)

                                                                    CGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGG                        <  SRR4302537.2875410/94‑1 (MQ=60)

                                                                    CGAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGG                        <  SRR4302537.5237846/94‑1 (MQ=60)

                                                                     GAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGG                       <  SRR4302537.5814003/94‑1 (MQ=60)

                                                                     GAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGG                       >  SRR4302537.5333437/1‑94 (MQ=60)

                                                                     GAAAAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGG                       >  SRR4302537.6415293/1‑94 (MQ=60)

                                                                        AAAAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCG                    <  SRR4302537.6258641/94‑1 (MQ=60)

                                                                          AAATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGT                  >  SRR4302537.2733914/1‑94 (MQ=60)

                                                                            ATCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCCATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTT                >  SRR4302537.4560388/1‑94 (MQ=60)

                                                                             TCATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTT               <  SRR4302537.4002070/94‑1 (MQ=60)

                                                                               ATATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCC             <  SRR4302537.6007174/94‑1 (MQ=60)

                                                                                 ATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCG           >  SRR4302537.549278/1‑94 (MQ=60)

                                                                                 ATCGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCG           >  SRR4302537.5432140/1‑94 (MQ=60)

                                                                                   CGCCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTT         <  SRR4302537.6290522/94‑1 (MQ=60)

                                                                                     CCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCC       <  SRR4302537.363484/94‑1 (MQ=60)

                                                                                     CCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCC       >  SRR4302537.280723/1‑94 (MQ=60)

                                                                                     CCAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCC       <  SRR4302537.2861402/94‑1 (MQ=60)

                                                                                      CAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCC      <  SRR4302537.738854/94‑1 (MQ=60)

                                                                                      CAGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTAACATAGGGGCCGGTTTTCCCGTTCCC      >  SRR4302537.4811514/1‑94 (MQ=60)

                                                                                       AGGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCC     >  SRR4302537.3403510/1‑94 (MQ=60)

                                                                                        GGCGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCT    <  SRR4302537.3343744/94‑1 (MQ=60)

                                                                                          CGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCTGA  >  SRR4302537.279364/1‑94 (MQ=60)

                                                                                          CGGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCTGA  <  SRR4302537.5364880/94‑1 (MQ=60)

GGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCTGA  >  NC_000913/2332488‑2332671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`