Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,404,897	A→G	intergenic (‑236/‑684)	lrhA ← / → b2290	NADH dehydrogenase transcriptional regulator, LysR family/putative aminotransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,404,897	0	A	G	100.0%	826.4 / NA	230	intergenic (‑236/‑684)	lrhA/b2290	NADH dehydrogenase transcriptional regulator, LysR family/putative aminotransferase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (120/110); total (120/110)

Only 100 of 231 total aligned reads displayed.

CGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACC  >  NC_000913/2404807‑2404986

cGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGtt                                                                                         <  2:681781/93‑1 (MQ=255)

cGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGtt                                                                                         <  2:3672181/93‑1 (MQ=255)

cGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAATTACTCACTCGTTTCTGtt                                                                                         <  2:6285088/93‑1 (MQ=255)

 gACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGttt                                                                                        <  1:4008999/93‑1 (MQ=255)

 gACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGttt                                                                                        >  1:5612622/1‑93 (MQ=255)

 gACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGttt                                                                                        <  2:2331250/93‑1 (MQ=255)

 gACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGttt                                                                                        >  1:2679168/1‑93 (MQ=255)

  aCTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTa                                                                                       >  2:4236270/1‑93 (MQ=255)

  aCTCACATTGTCCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTa                                                                                       >  2:2110928/1‑93 (MQ=255)

   cTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTAt                                                                                      >  1:4610314/1‑93 (MQ=255)

    tCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATg                                                                                     <  1:1414465/93‑1 (MQ=255)

      acaTTGTTCCGTTATAAAGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGAc                                                                                   >  2:836719/1‑93 (MQ=255)

       caTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACa                                                                                  <  2:5233662/93‑1 (MQ=255)

       caTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACa                                                                                  >  1:1606152/1‑93 (MQ=255)

        aTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACAt                                                                                 >  1:6051849/1‑93 (MQ=255)

        aTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACAt                                                                                 <  1:5671827/93‑1 (MQ=255)

        aTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACAt                                                                                 >  1:4922182/1‑93 (MQ=255)

         ttGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATg                                                                                <  2:2738026/93‑1 (MQ=255)

         ttGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATg                                                                                >  1:1276955/1‑93 (MQ=255)

           gTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATgcg                                                                              <  2:5882577/93‑1 (MQ=255)

           gTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATgcg                                                                              >  1:2099/1‑93 (MQ=255)

             tCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGcgcg                                                                            >  1:1080207/1‑93 (MQ=255)

              ccGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCgt                                                                           <  2:4836492/93‑1 (MQ=255)

                gTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCgtgt                                                                         <  2:4069049/93‑1 (MQ=255)

                 ttATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGtt                                                                        >  1:3037661/1‑93 (MQ=255)

                   ataATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTg                                                                      <  1:6297413/93‑1 (MQ=255)

                   ataATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTg                                                                      >  1:3232075/1‑93 (MQ=255)

                    taATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGt                                                                     <  1:260568/93‑1 (MQ=255)

                    taATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGt                                                                     >  1:5111723/1‑93 (MQ=255)

                    taATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGt                                                                     >  1:4157027/1‑93 (MQ=255)

                     aaTGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGta                                                                    <  2:3653001/93‑1 (MQ=255)

                     aaTGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGta                                                                    <  2:4987214/93‑1 (MQ=255)

                     aaTGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGta                                                                    <  1:43235/93‑1 (MQ=255)

                      aTGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGtat                                                                   <  2:4583544/93‑1 (MQ=255)

                      aTGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGtat                                                                   <  2:228248/93‑1 (MQ=255)

                       tGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGtata                                                                  <  1:4755791/93‑1 (MQ=255)

                         ccTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaa                                                                >  2:3150540/1‑93 (MQ=255)

                          cTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaat                                                               <  2:4497957/93‑1 (MQ=255)

                          cTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaat                                                               <  1:2739781/93‑1 (MQ=255)

                          cTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaat                                                               >  1:6387923/1‑93 (MQ=255)

                          cTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaat                                                               >  2:6163881/1‑93 (MQ=255)

                           tGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaatg                                                              <  2:1075971/93‑1 (MQ=255)

                             aaGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaatgta                                                            <  1:2359461/93‑1 (MQ=255)

                               gTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTGTGACATGCGCGTGTTTGTAtaaatgtaaa                                                          >  1:1527527/1‑93 (MQ=255)

                               gTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaatgtaaa                                                          >  2:535037/1‑93 (MQ=255)

                               gTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaatgtaaa                                                          <  1:3756106/93‑1 (MQ=255)

                               gTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaatgtaaa                                                          <  2:4348160/93‑1 (MQ=255)

                                tAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaatgtaaat                                                         >  2:5567385/1‑93 (MQ=255)

                                tAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAtaaatgtaaat                                                         <  2:1560038/93‑1 (MQ=255)

                                  gATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATaaatgtaaatgt                                                       <  1:5022985/93‑1 (MQ=255)

                                   aTCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAAtgtg                                                      <  2:323751/93‑1 (MQ=255)

                                    tCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGa                                                     >  2:3420253/1‑93 (MQ=255)

                                    tCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGa                                                     <  2:5479691/93‑1 (MQ=255)

                                    tCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGa                                                     <  1:5792550/93‑1 (MQ=255)

                                    tCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGa                                                     >  2:2642892/1‑93 (MQ=255)

                                     cacaGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAg                                                    <  2:506175/93‑1 (MQ=255)

                                     cacaGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAg                                                    >  2:2843454/1‑93 (MQ=255)

                                      acaGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGt                                                   <  1:67369/93‑1 (MQ=255)

                                        aGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTcc                                                 >  2:3681024/1‑93 (MQ=255)

                                           atatatCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTg                                              >  2:3335127/1‑93 (MQ=255)

                                                 cTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCAc                                        >  2:4562964/1‑93 (MQ=255)

                                                  ttCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCAct                                       >  2:2184006/1‑93 (MQ=255)

                                                    cAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCActct                                     <  1:916470/93‑1 (MQ=255)

                                                     aGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACtctc                                    >  2:2390704/1‑93 (MQ=255)

                                                     aGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACtctc                                    >  1:888338/1‑93 (MQ=255)

                                                      gggATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCg                                   <  1:4477420/93‑1 (MQ=255)

                                                      gggATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCg                                   >  1:5464321/1‑93 (MQ=255)

                                                         aTCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTgc                                >  1:1888187/1‑93 (MQ=255)

                                                         aTCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTgc                                >  2:4866086/1‑93 (MQ=255)

                                                            gCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTgcagc                             >  2:3987021/1‑93 (MQ=255)

                                                              atatCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCAt                           >  1:1734237/1‑93 (MQ=255)

                                                               tatCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATc                          >  1:3125662/1‑93 (MQ=255)

                                                               tatCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATc                          <  1:3548873/93‑1 (MQ=255)

                                                               tatCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATc                          <  2:116604/93‑1 (MQ=255)

                                                                 tCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGc                        >  2:1380287/1‑93 (MQ=255)

                                                                 tCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGc                        >  2:5977727/1‑93 (MQ=255)

                                                                 tCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTACACTCTCGTGCAGCATCGc                        >  1:5844900/1‑93 (MQ=255)

                                                                   tATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTg                      >  1:6149619/1‑93 (MQ=255)

                                                                     ttAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGt                    <  2:4029378/93‑1 (MQ=255)

                                                                     ttAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGt                    <  1:988976/93‑1 (MQ=255)

                                                                        aGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCAt                 >  2:6065171/1‑93 (MQ=255)

                                                                         gTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATa                <  1:3677883/93‑1 (MQ=255)

                                                                         gTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATa                <  1:45416/93‑1 (MQ=255)

                                                                         gTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATa                >  2:1899753/1‑93 (MQ=255)

                                                                         gTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATa                <  2:2059602/93‑1 (MQ=255)

                                                                          ttACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAc               <  2:4380655/93‑1 (MQ=255)

                                                                          ttACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAc               <  2:3161191/93‑1 (MQ=255)

                                                                           tACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAcg              <  1:3474306/93‑1 (MQ=255)

                                                                            tctcactcTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAcgc             <  1:735949/92‑1 (MQ=255)

                                                                            actcactcTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAcgc             <  1:2930098/93‑1 (MQ=255)

                                                                               cactcTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGaa          <  2:3029037/93‑1 (MQ=255)

                                                                               cactcTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGaa          >  2:1755126/1‑93 (MQ=255)

                                                                                 ctctTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAaca        >  1:3636014/1‑93 (MQ=255)

                                                                                  tctTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAacac       >  2:6412/1‑93 (MQ=255)

                                                                                   ctTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACg      >  2:2465468/1‑93 (MQ=255)

                                                                                   ctTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACg      <  1:5958112/93‑1 (MQ=255)

                                                                                    ttttCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACga     >  1:5866968/1‑92 (MQ=255)

                                                                                    ttttCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGt     >  1:3961027/1‑93 (MQ=255)

                                                                                     tttCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTa    <  1:2201653/93‑1 (MQ=255)

                                                                                      ttCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTAc   >  2:3744158/1‑93 (MQ=255)

CGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACC  >  NC_000913/2404807‑2404986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACA  >  NC_000913/2404805‑2404990

AGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGT                                                                                              <  SRR4302537.6403932/94‑1 (MQ=60)

 GCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTT                                                                                             <  SRR4302537.3029221/94‑1 (MQ=60)

 GCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTT                                                                                             <  SRR4302537.33497/94‑1 (MQ=60)

  CGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTT                                                                                            >  SRR4302537.2697874/1‑94 (MQ=60)

  CGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTT                                                                                            >  SRR4302537.5650999/1‑94 (MQ=60)

  CGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTT                                                                                            <  SRR4302537.732687/94‑1 (MQ=60)

  CGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTT                                                                                            >  SRR4302537.202484/1‑94 (MQ=60)

  CGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTT                                                                                            >  SRR4302537.3809821/1‑94 (MQ=60)

   GACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTA                                                                                           <  SRR4302537.4037062/94‑1 (MQ=60)

   GACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTA                                                                                           >  SRR4302537.2292432/1‑94 (MQ=60)

   GACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTA                                                                                           >  SRR4302537.5998548/1‑94 (MQ=60)

    ACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTAT                                                                                          <  SRR4302537.6038916/94‑1 (MQ=60)

    ACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTAT                                                                                          <  SRR4302537.6335003/94‑1 (MQ=60)

    ACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTAT                                                                                          >  SRR4302537.4642236/1‑94 (MQ=60)

     CTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTATATG                                                                                         >  SRR4302537.4488454/1‑94 (MQ=60)

      TCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGA                                                                                        <  SRR4302537.1424309/94‑1 (MQ=60)

       CACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGAC                                                                                       >  SRR4302537.3138126/1‑94 (MQ=60)

        ACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACA                                                                                      >  SRR4302537.1617384/1‑94 (MQ=60)

        ACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACA                                                                                      >  SRR4302537.777944/1‑94 (MQ=60)

        ACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACA                                                                                      >  SRR4302537.3452812/1‑94 (MQ=60)

         CATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACAT                                                                                     >  SRR4302537.6093419/1‑94 (MQ=60)

         CATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACAT                                                                                     >  SRR4302537.3671156/1‑94 (MQ=60)

         CATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACAT                                                                                     >  SRR4302537.4956130/1‑94 (MQ=60)

         CATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACAT                                                                                     <  SRR4302537.79903/94‑1 (MQ=60)

         CATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACAT                                                                                     <  SRR4302537.514860/94‑1 (MQ=60)

          ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATG                                                                                    <  SRR4302537.3029168/94‑1 (MQ=60)

          ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATG                                                                                    >  SRR4302537.1285829/1‑94 (MQ=60)

          ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATG                                                                                    <  SRR4302537.5710635/94‑1 (MQ=60)

            TGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCG                                                                                  >  SRR4302537.2112/1‑94 (MQ=60)

             GTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCATGGATCGCATATCTATTAAGTTAATCACTCTTTTCTGTTTATGACATGCAC                                                                                 >  SRR4302537.4584386/1‑94 (MQ=60)

              TTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCG                                                                                >  SRR4302537.1087662/1‑94 (MQ=60)

                CCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTG                                                                              <  SRR4302537.3670881/94‑1 (MQ=60)

                CCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTG                                                                              <  SRR4302537.5724721/94‑1 (MQ=60)

                  GTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTT                                                                            >  SRR4302537.3058829/1‑94 (MQ=60)

                   TTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTT                                                                           <  SRR4302537.4661913/94‑1 (MQ=60)

                   TTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTT                                                                           <  SRR4302537.414295/94‑1 (MQ=60)

                    TATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTG                                                                          >  SRR4302537.3153743/1‑94 (MQ=60)

                    TATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTG                                                                          >  SRR4302537.3254850/1‑94 (MQ=60)

                    TATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTG                                                                          >  SRR4302537.1462702/1‑94 (MQ=60)

                     ATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGT                                                                         >  SRR4302537.5146956/1‑94 (MQ=60)

                     ATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGT                                                                         >  SRR4302537.4186058/1‑94 (MQ=60)

                     ATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGT                                                                         <  SRR4302537.2004778/94‑1 (MQ=60)

                     ATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGT                                                                         <  SRR4302537.6340544/94‑1 (MQ=60)

                      TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTA                                                                        <  SRR4302537.262405/94‑1 (MQ=60)

                       AATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAT                                                                       >  SRR4302537.5665567/1‑94 (MQ=60)

                       AATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTAT                                                                       <  SRR4302537.43559/94‑1 (MQ=60)

                         TGCCTGAAGTAGATCACAGAATATATCTTCAGTGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAA                                                                     <  SRR4302537.1128735/94‑1 (MQ=60)

                         TGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAA                                                                     <  SRR4302537.4788647/94‑1 (MQ=60)

                           CCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAAT                                                                   >  SRR4302537.6431452/1‑94 (MQ=60)

                           CCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAAT                                                                   <  SRR4302537.2128687/94‑1 (MQ=60)

                            CTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATG                                                                  <  SRR4302537.2758900/94‑1 (MQ=60)

                            CTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATG                                                                  >  SRR4302537.2720381/1‑94 (MQ=60)

                            CTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATG                                                                  >  SRR4302537.3458061/1‑94 (MQ=60)

                             TGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGT                                                                 >  SRR4302537.2490316/1‑94 (MQ=60)

                              GAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTA                                                                >  SRR4302537.1607205/1‑94 (MQ=60)

                              GAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTA                                                                >  SRR4302537.6374233/1‑94 (MQ=60)

                               AAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAA                                                               <  SRR4302537.2376103/94‑1 (MQ=60)

                               AAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAA                                                               <  SRR4302537.2847571/94‑1 (MQ=60)

                                AGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTGTGACATGCGCGTGTTTGTATAAATGTAAA                                                              >  SRR4302537.1538199/1‑94 (MQ=60)

                                AGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAA                                                              <  SRR4302537.5719837/94‑1 (MQ=60)

                                 GTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAAT                                                             <  SRR4302537.3782479/94‑1 (MQ=60)

                                  TAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATG                                                            <  SRR4302537.4028184/94‑1 (MQ=60)

                                  TAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATG                                                            >  SRR4302537.986667/1‑94 (MQ=60)

                                  TAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATG                                                            <  SRR4302537.2833673/94‑1 (MQ=60)

                                    GATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTG                                                          <  SRR4302537.5057582/94‑1 (MQ=60)

                                    GATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTG                                                          <  SRR4302537.3514792/94‑1 (MQ=60)

                                      TCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAG                                                        <  SRR4302537.5832262/94‑1 (MQ=60)

                                        ACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTC                                                      <  SRR4302537.67866/94‑1 (MQ=60)

                                         CAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCC                                                     <  SRR4302537.6186242/94‑1 (MQ=60)

                                           GAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTT                                                   <  SRR4302537.5838586/94‑1 (MQ=60)

                                           GAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTT                                                   <  SRR4302537.4840626/94‑1 (MQ=60)

                                            AATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTG                                                  <  SRR4302537.505267/94‑1 (MQ=60)

                                               ATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTC                                               >  SRR4302537.596656/1‑94 (MQ=60)

                                                   CTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACT                                           <  SRR4302537.1707081/94‑1 (MQ=60)

                                                      CAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTC                                        >  SRR4302537.894448/1‑94 (MQ=60)

                                                      CAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTC                                        <  SRR4302537.922796/94‑1 (MQ=60)

                                                       AGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCG                                       >  SRR4302537.5501590/1‑94 (MQ=60)

                                                       AGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCG                                       >  SRR4302537.5260977/1‑94 (MQ=60)

                                                        GGGATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGT                                      <  SRR4302537.4508393/94‑1 (MQ=60)

                                                          GATCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGC                                    >  SRR4302537.1901315/1‑94 (MQ=60)

                                                            TCGCATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAG                                  <  SRR4302537.4543242/94‑1 (MQ=60)

                                                               CATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCAT                               >  SRR4302537.1746332/1‑94 (MQ=60)

                                                                ATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATC                              >  SRR4302537.3147558/1‑94 (MQ=60)

                                                                ATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATC                              <  SRR4302537.6271814/94‑1 (MQ=60)

                                                                ATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATC                              >  SRR4302537.3621472/1‑94 (MQ=60)

                                                                ATATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATC                              >  SRR4302537.2561568/1‑94 (MQ=60)

                                                                 TATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCG                             <  SRR4302537.3573942/94‑1 (MQ=60)

                                                                  ATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGC                            >  SRR4302537.1868900/1‑94 (MQ=60)

                                                                  ATCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTACACTCTCGTGCAGCATCGC                            >  SRR4302537.5884978/1‑94 (MQ=60)

                                                                   TCTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCT                           <  SRR4302537.5092820/94‑1 (MQ=60)

                                                                    CTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTG                          <  SRR4302537.4008457/94‑1 (MQ=60)

                                                                    CTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTG                          >  SRR4302537.6191915/1‑94 (MQ=60)

                                                                    CTATTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTG                          >  SRR4302537.1601335/1‑94 (MQ=60)

                                                                       TTAAGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTC                       <  SRR4302537.995813/94‑1 (MQ=60)

                                                                         ttgttgCTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTTAT                     <  SRR4302537.487705/88‑1 (MQ=60)

                                                                          AGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATA                    <  SRR4302537.4503635/94‑1 (MQ=60)

                                                                          AGTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATA                    >  SRR4302537.2668332/1‑94 (MQ=60)

                                                                           GTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAC                   <  SRR4302537.3703758/94‑1 (MQ=60)

                                                                           GTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAC                   <  SRR4302537.5506228/94‑1 (MQ=60)

                                                                           GTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAC                   <  SRR4302537.45755/94‑1 (MQ=60)

                                                                           GTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAC                   <  SRR4302537.4278972/94‑1 (MQ=60)

                                                                           GTTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATAC                   <  SRR4302537.3747708/94‑1 (MQ=60)

                                                                            TTACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACG                  >  SRR4302537.6470224/1‑94 (MQ=60)

                                                                             TACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGC                 <  SRR4302537.3498889/94‑1 (MQ=60)

                                                                              TCTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCG                <  SRR4302537.740970/94‑1 (MQ=60)

                                                                              ACTCACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCG                <  SRR4302537.2950673/94‑1 (MQ=60)

                                                                                 CACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAAC             <  SRR4302537.1387166/94‑1 (MQ=60)

                                                                                  ACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACA            >  SRR4302537.3661622/1‑94 (MQ=60)

                                                                                  ACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACA            >  SRR4302537.997920/1‑94 (MQ=60)

                                                                                  ACTCTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACA            >  SRR4302537.5906931/1‑94 (MQ=60)

                                                                                     CTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGT         <  SRR4302537.5999008/94‑1 (MQ=60)

                                                                                     CTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGT         >  SRR4302537.3988735/1‑94 (MQ=60)

                                                                                     CTTTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGA         >  SRR4302537.5907217/1‑94 (MQ=60)

                                                                                       TTTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTAC       <  SRR4302537.2217175/94‑1 (MQ=60)

                                                                                        TTCTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACC      >  SRR4302537.917254/1‑94 (MQ=60)

                                                                                          CTGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAA    <  SRR4302537.4252467/94‑1 (MQ=60)

                                                                                          CTGTTTATGACATGCGCATGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAA    >  SRR4302537.4962814/1‑94 (MQ=60)

                                                                                           TGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAAC   <  SRR4302537.6398089/94‑1 (MQ=60)

                                                                                           TGTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAAC   >  SRR4302537.5280434/1‑94 (MQ=60)

                                                                                            GTTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACA  <  SRR4302537.5571824/94‑1 (MQ=60)

AGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACA  >  NC_000913/2404805‑2404990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`