Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,416,514	A→G	R479G (AGG→GGG)	yfcC →	putative S‑transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,416,514	0	A	G	99.4%	573.8 / ‑4.6	168	R479G (AGG→GGG)	yfcC	putative S‑transferase
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (77/90); minor base T (1/0); total (78/90)
Fisher's exact test for biased strand distribution p-value = 4.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01

Only 100 of 180 total aligned reads displayed.

GTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCAGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCAGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCA  >  NC_000913/2416424‑2416602

gTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCggg                                                                                        >  1:1512001/1‑93 (MQ=255)

gTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCggg                                                                                        <  2:2384874/93‑1 (MQ=255)

 ttACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCgggg                                                                                       <  2:2539318/93‑1 (MQ=255)

  tACCGTGCTGGCGTTCTAGTTTGGTGATGGCTTCGGTCACATCATTTACCCACCCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGt                                                                                      <  2:6345516/93‑1 (MQ=255)

  tACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGt                                                                                      <  2:1099164/93‑1 (MQ=255)

   aCCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTg                                                                                     >  1:1890952/1‑93 (MQ=255)

    ccGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTgg                                                                                    >  2:763015/1‑93 (MQ=255)

    ccGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTgg                                                                                    >  1:1274172/1‑93 (MQ=255)

      gTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGAc                                                                                  >  2:2683458/1‑93 (MQ=255)

      gTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGAc                                                                                  >  2:6463820/1‑93 (MQ=255)

       tGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCTACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACt                                                                                 >  1:6242432/1‑93 (MQ=255)

       tGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACt                                                                                 >  2:3631463/1‑93 (MQ=255)

         cTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTc                                                                               <  1:5862674/93‑1 (MQ=255)

          tGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTcc                                                                              >  1:2223532/1‑93 (MQ=255)

             cGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTa                                                                           <  2:4780091/93‑1 (MQ=255)

              gTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTaa                                                                          >  1:2502323/1‑93 (MQ=255)

              gTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTaa                                                                          <  2:2227677/93‑1 (MQ=255)

              gTTCCAGTTTGGTGATGGCTTCAGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTaa                                                                          <  1:1695304/93‑1 (MQ=255)

               ttCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAAc                                                                         >  2:2632381/1‑93 (MQ=255)

                tCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACt                                                                        <  2:148037/93‑1 (MQ=255)

                tCCAGTTTGGTGATGGCTTCGGTCACATCATTTAACCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACt                                                                        >  1:5057095/1‑93 (MQ=255)

                  cAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTgg                                                                      >  1:100877/1‑93 (MQ=255)

                   aGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGc                                                                     >  2:1971936/1‑93 (MQ=255)

                    gTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCt                                                                    >  2:5762667/1‑93 (MQ=255)

                     tttGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTg                                                                   >  1:3480498/1‑93 (MQ=255)

                       tGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGaa                                                                 <  1:4239373/93‑1 (MQ=255)

                       tGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGaa                                                                 <  1:4199848/93‑1 (MQ=255)

                          tGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGt                                                              <  1:5822434/93‑1 (MQ=255)

                           gATGGCTTCGGTCACATCATTTACCCAACCTGAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTg                                                             <  1:790643/93‑1 (MQ=255)

                           gATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTg                                                             <  2:1036060/93‑1 (MQ=255)

                           gATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTg                                                             <  2:4317142/93‑1 (MQ=255)

                            aTGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTgg                                                            <  2:3226930/93‑1 (MQ=255)

                            aTGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTgg                                                            <  2:2976896/93‑1 (MQ=255)

                            aTGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTgg                                                            <  2:5619086/93‑1 (MQ=255)

                              ggCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGgc                                                          <  1:2459807/93‑1 (MQ=255)

                                cTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGgcgg                                                        >  1:4078079/1‑92 (MQ=255)

                                  tcggTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGa                                                      >  1:2116670/4‑93 (MQ=255)

                                  tcggTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGa                                                      <  2:4052168/90‑1 (MQ=255)

                                     gTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGAccc                                                   <  2:347887/93‑1 (MQ=255)

                                       cacaTCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTa                                                 <  2:2368063/93‑1 (MQ=255)

                                        acaTCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTAc                                                >  1:3527591/1‑93 (MQ=255)

                                        acaTCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTAc                                                >  1:6013365/1‑93 (MQ=255)

                                         catcatTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACt                                               >  1:5460688/1‑93 (MQ=255)

                                         catcatTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACt                                               <  2:5676784/93‑1 (MQ=255)

                                         catcatTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACt                                               >  2:5418528/1‑93 (MQ=255)

                                          atcatTTACCCACCCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACtt                                              <  2:3870409/93‑1 (MQ=255)

                                          atcatTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACtt                                              >  1:2920842/1‑93 (MQ=255)

                                           tcatTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTg                                             >  2:4965545/1‑93 (MQ=255)

                                           tcatTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTg                                             <  1:3832276/93‑1 (MQ=255)

                                             atTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCTGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTggc                                           >  2:1663678/1‑92 (MQ=255)

                                             atTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGa                                           <  2:3533773/93‑1 (MQ=255)

                                             atTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGa                                           <  1:4493598/93‑1 (MQ=255)

                                              tttACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGAc                                          >  1:5648413/1‑93 (MQ=255)

                                              tttACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGAc                                          >  2:3396697/1‑93 (MQ=255)

                                              tttACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTCGGAc                                          >  1:2766232/1‑93 (MQ=255)

                                              tttACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTGCCGTAACTGGCTGAAGGTGGGAGCGACCCTACTTGGAc                                          >  1:3663739/1‑93 (MQ=255)

                                               ttACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGAct                                         <  1:4452268/93‑1 (MQ=255)

                                                  cccAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGActgct                                      <  2:2750640/93‑1 (MQ=255)

                                                    cAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGt                                    >  2:3354727/1‑93 (MQ=255)

                                                    cAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGt                                    >  1:1116569/1‑93 (MQ=255)

                                                    cAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGt                                    <  2:2754364/93‑1 (MQ=255)

                                                     aaCCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGtt                                   <  1:4072396/93‑1 (MQ=255)

                                                     aaCCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGGGGACTTCCGTAACTGGCTGAGGGTGGGCGCGACCCTACTTGGACTGCTGtt                                   >  1:3170019/1‑93 (MQ=255)

                                                      aCCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGttt                                  <  2:4535860/93‑1 (MQ=255)

                                                       ccTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTtta                                 <  1:6306598/93‑1 (MQ=255)

                                                       ccTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTtta                                 <  2:5206031/93‑1 (MQ=255)

                                                         tCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTttatt                               >  2:2197410/1‑93 (MQ=255)

                                                          cAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTttatta                              >  1:3531111/1‑93 (MQ=255)

                                                           aGCGTCGTTAATGGCATCGCTCGGTGTGTGCGGCGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTtattat                             <  2:5213695/93‑1 (MQ=255)

                                                           aGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTtattat                             <  2:2878279/93‑1 (MQ=255)

                                                           aGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTtattat                             <  1:507740/93‑1 (MQ=255)

                                                           aGCCTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTAGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTtattat                             <  2:1388966/93‑1 (MQ=255)

                                                            gCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATg                            >  2:1343153/1‑93 (MQ=255)

                                                            gCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATg                            <  1:759374/93‑1 (MQ=255)

                                                             cgtcgtTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGt                           <  1:5445718/93‑1 (MQ=255)

                                                                 gtTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAg                       <  1:737593/93‑1 (MQ=255)

                                                                    aaTGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGcgt                    >  1:770382/1‑93 (MQ=255)

                                                                    aaTGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGcgt                    >  1:5834340/1‑93 (MQ=255)

                                                                    aaTGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGcgt                    >  2:1541298/1‑93 (MQ=255)

                                                                     aTGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGcgtc                   <  2:2930825/93‑1 (MQ=255)

                                                                     aTGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGcgtc                   <  1:1189402/93‑1 (MQ=255)

                                                                     aTGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGcgtc                   >  1:6032318/1‑93 (MQ=255)

                                                                        gCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTa                <  1:4378777/93‑1 (MQ=255)

                                                                         cAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAg               <  1:5939500/93‑1 (MQ=255)

                                                                          aaCGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGt              <  2:308622/93‑1 (MQ=255)

                                                                          aaCGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGt              <  2:350058/93‑1 (MQ=255)

                                                                          aaCGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGt              <  2:5916937/93‑1 (MQ=255)

                                                                           aCGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTg             <  1:6366447/93‑1 (MQ=255)

                                                                            cGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGa            >  1:2956599/1‑93 (MQ=255)

                                                                            cGCTCGGTGTGTGCGGGGTGGACTCCCGTAACTGGCTGAAGGGGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCAAGCGTCGTAGTGa            <  2:2333539/93‑1 (MQ=255)

                                                                               tCGGTGTGTGCGGGGTGGACTTCCGTCACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCg         >  1:1028511/1‑93 (MQ=255)

                                                                               tCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCg         <  1:6283522/93‑1 (MQ=255)

                                                                               tCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCg         >  2:250569/1‑93 (MQ=255)

                                                                               tCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCg         <  2:2801175/93‑1 (MQ=255)

                                                                                cGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCgg        >  1:371763/1‑93 (MQ=255)

                                                                                 ggTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGgc       <  1:1410048/93‑1 (MQ=255)

                                                                                  gtgtgtGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGgcg      >  2:4288526/1‑93 (MQ=255)

                                                                                   tgtgtgCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGgcgc     <  1:5767478/93‑1 (MQ=255)

                                                                                    gtgtgCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCt    >  1:1344962/1‑93 (MQ=255)

                                                                                     tgtgCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTc   <  1:2062315/93‑1 (MQ=255)

GTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCAGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCAGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCA  >  NC_000913/2416424‑2416602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCAGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCAGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCAGTTG  >  NC_000913/2416421‑2416606

CAGGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCG                                                                                              <  SRR4302537.3576536/94‑1 (MQ=60)

CAGGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCG                                                                                              <  SRR4302537.4291850/94‑1 (MQ=60)

CAGGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCG                                                                                              >  SRR4302537.4975788/1‑94 (MQ=60)

 AGGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGG                                                                                             >  SRR4302537.3531606/1‑94 (MQ=60)

 AGGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGG                                                                                             <  SRR4302537.3943963/94‑1 (MQ=60)

 AGGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGG                                                                                             >  SRR4302537.4281206/1‑94 (MQ=60)

  GGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGG                                                                                            >  SRR4302537.2517158/1‑94 (MQ=60)

  GGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGG                                                                                            <  SRR4302537.2174035/94‑1 (MQ=60)

  GGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGG                                                                                            <  SRR4302537.1556286/94‑1 (MQ=60)

  GGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGG                                                                                            >  SRR4302537.1522565/1‑94 (MQ=60)

     TACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTG                                                                                         >  SRR4302537.1904096/1‑94 (MQ=60)

      ACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGG                                                                                        >  SRR4302537.1283033/1‑94 (MQ=60)

       CCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGA                                                                                       >  SRR4302537.3015072/1‑94 (MQ=60)

        CGTGCTGGCGTTCCAGTTTGGTGATGGCTTCAGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGAC                                                                                      >  SRR4302537.766012/1‑94 (MQ=60)

         GTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCTACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACT                                                                                     >  SRR4302537.6285338/1‑94 (MQ=60)

         GTGCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACT                                                                                     >  SRR4302537.6040087/1‑94 (MQ=60)

           GCTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTC                                                                                   >  SRR4302537.6163072/1‑94 (MQ=60)

            CTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCC                                                                                  <  SRR4302537.5902880/94‑1 (MQ=60)

            CTGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCC                                                                                  >  SRR4302537.2239196/1‑94 (MQ=60)

             TGGCGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCG                                                                                 <  SRR4302537.5215189/94‑1 (MQ=60)

                CGTTCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAA                                                                              >  SRR4302537.2519926/1‑94 (MQ=60)

                 GTTCCAGTTTGGTGATGGCTTCAGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAAC                                                                             <  SRR4302537.1707165/94‑1 (MQ=60)

                  TTCCAGTTTGGTGATGGCTTCGGTCACATCATTTAACCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACT                                                                            >  SRR4302537.5091909/1‑94 (MQ=60)

                   TCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTG                                                                           <  SRR4302537.3682945/94‑1 (MQ=60)

                   TCCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTG                                                                           >  SRR4302537.3779713/1‑94 (MQ=60)

                    CCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGG                                                                          >  SRR4302537.909197/1‑94 (MQ=60)

                    CCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGG                                                                          >  SRR4302537.101602/1‑94 (MQ=60)

                    CCAGTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGG                                                                          <  SRR4302537.2200868/94‑1 (MQ=60)

                       GTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTG                                                                       >  SRR4302537.297294/1‑94 (MQ=60)

                       GTTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTG                                                                       >  SRR4302537.3505121/1‑94 (MQ=60)

                        TTTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGA                                                                      <  SRR4302537.3977208/94‑1 (MQ=60)

                         TTGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAA                                                                     <  SRR4302537.581052/94‑1 (MQ=60)

                          TGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAG                                                                    <  SRR4302537.4268852/94‑1 (MQ=60)

                          TGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAG                                                                    <  SRR4302537.4229172/94‑1 (MQ=60)

                          TGGTGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAG                                                                    >  SRR4302537.763084/1‑94 (MQ=60)

                             TGATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTG                                                                 <  SRR4302537.5862337/94‑1 (MQ=60)

                              GATGGCTTCGGTCACATCATTTACCCAACCTGAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGG                                                                <  SRR4302537.796072/94‑1 (MQ=60)

                              GATGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGG                                                                >  SRR4302537.5706165/1‑94 (MQ=60)

                                TGGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGC                                                              >  SRR4302537.6483773/1‑94 (MQ=60)

                                 GGCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCG                                                             <  SRR4302537.2477107/94‑1 (MQ=60)

                                  GCTTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGG                                                            >  SRR4302537.4106552/1‑94 (MQ=60)

                                    TTCGGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGA                                                          >  SRR4302537.2131581/1‑94 (MQ=60)

                                        GTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCT                                                      <  SRR4302537.1242383/94‑1 (MQ=60)

                                          CACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTAC                                                    >  SRR4302537.5863199/1‑94 (MQ=60)

                                          CACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTAC                                                    >  SRR4302537.3552541/1‑94 (MQ=60)

                                          CACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTAC                                                    >  SRR4302537.6054680/1‑94 (MQ=60)

                                          CACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTAC                                                    <  SRR4302537.4254448/94‑1 (MQ=60)

                                           ACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACT                                                   >  SRR4302537.5497938/1‑94 (MQ=60)

                                            CATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTT                                                  <  SRR4302537.1981473/94‑1 (MQ=60)

                                            CATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTT                                                  >  SRR4302537.2941368/1‑94 (MQ=60)

                                             ATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTG                                                 >  SRR4302537.637317/1‑94 (MQ=60)

                                              TCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGG                                                <  SRR4302537.3859134/94‑1 (MQ=60)

                                                ATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGAC                                              >  SRR4302537.149992/1‑94 (MQ=60)

                                                ATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGAC                                              >  SRR4302537.5687071/1‑94 (MQ=60)

                                                ATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGAC                                              <  SRR4302537.4524685/94‑1 (MQ=60)

                                                ATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTCGGAC                                              >  SRR4302537.2785562/1‑94 (MQ=60)

                                                ATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTGCCGTAACTGGCTGAAGGTGGGAGCGACCCTACTTGGAC                                              >  SRR4302537.3689525/1‑94 (MQ=60)

                                                 TTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACT                                             <  SRR4302537.2314814/94‑1 (MQ=60)

                                                  TTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTG                                            <  SRR4302537.4483018/94‑1 (MQ=60)

                                                  TTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTG                                            <  SRR4302537.5095370/94‑1 (MQ=60)

                                                  TTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTG                                            >  SRR4302537.4920067/1‑94 (MQ=60)

                                                      CCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGT                                        >  SRR4302537.1124293/1‑94 (MQ=60)

                                                       CAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTT                                       >  SRR4302537.1292738/1‑94 (MQ=60)

                                                       CAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGGGGACTTCCGTAACTGGCTGAGGGTGGGCGCGACCCTACTTGGACTGCTGTT                                       >  SRR4302537.3192290/1‑94 (MQ=60)

                                                        AACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTT                                      >  SRR4302537.1105330/1‑94 (MQ=60)

                                                        AACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTT                                      <  SRR4302537.4100833/94‑1 (MQ=60)

                                                         ACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGTACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTA                                     <  SRR4302537.4142057/94‑1 (MQ=60)

                                                          CCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTAT                                    <  SRR4302537.6349784/94‑1 (MQ=60)

                                                            TCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTA                                  >  SRR4302537.3556072/1‑94 (MQ=60)

                                                             CAGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTAT                                 >  SRR4302537.1156834/1‑94 (MQ=60)

                                                              AGCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATG                                <  SRR4302537.511225/94‑1 (MQ=60)

                                                               GCGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGT                               <  SRR4302537.764564/94‑1 (MQ=60)

                                                                CGTCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTC                              <  SRR4302537.5482866/94‑1 (MQ=60)

                                                                  TCGTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCA                            >  SRR4302537.3692636/1‑94 (MQ=60)

                                                                    GTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGC                          >  SRR4302537.588269/1‑94 (MQ=60)

                                                                    GTTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGC                          <  SRR4302537.742622/94‑1 (MQ=60)

                                                                     TTAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCG                         <  SRR4302537.5550830/94‑1 (MQ=60)

                                                                      TAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCTACCCTACTTGGACTGCTGTTTCTTATGTCCAGCGT                        <  SRR4302537.3511392/94‑1 (MQ=60)

                                                                      TAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGT                        >  SRR4302537.5874329/1‑94 (MQ=60)

                                                                      TAATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGT                        >  SRR4302537.775663/1‑94 (MQ=60)

                                                                       AATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTC                       >  SRR4302537.6073768/1‑94 (MQ=60)

                                                                        ATGGCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCG                      <  SRR4302537.1197665/94‑1 (MQ=60)

                                                                           GCAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAG                   <  SRR4302537.4409004/94‑1 (MQ=60)

                                                                            CAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGT                  >  SRR4302537.1846478/1‑94 (MQ=60)

                                                                            CAACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGT                  <  SRR4302537.5980266/94‑1 (MQ=60)

                                                                             AACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTG                 <  SRR4302537.3244301/94‑1 (MQ=60)

                                                                             AACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTG                 <  SRR4302537.439007/94‑1 (MQ=60)

                                                                              ACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGA                <  SRR4302537.6409868/94‑1 (MQ=60)

                                                                              ACGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGA                >  SRR4302537.2977342/1‑94 (MQ=60)

                                                                               CGCTCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGAT               >  SRR4302537.1649074/1‑94 (MQ=60)

                                                                                 CTCGGTGTGTGCGGGGTGGACTTCCGTCACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCG             >  SRR4302537.1035593/1‑94 (MQ=60)

                                                                                  TCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGG            >  SRR4302537.374340/1‑94 (MQ=60)

                                                                                  TCGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGG            <  SRR4302537.6326609/94‑1 (MQ=60)

                                                                                   CGGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGC           <  SRR4302537.6058668/94‑1 (MQ=60)

                                                                                    GGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCG          <  SRR4302537.6288312/94‑1 (MQ=60)

                                                                                    GGTGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCG          <  SRR4302537.1419869/94‑1 (MQ=60)

                                                                                      TGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCT        <  SRR4302537.5807005/94‑1 (MQ=60)

                                                                                      TGTGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCT        >  SRR4302537.1354334/1‑94 (MQ=60)

                                                                                        TGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCA      <  SRR4302537.4460038/94‑1 (MQ=60)

                                                                                        TGTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCA      <  SRR4302537.2076799/94‑1 (MQ=60)

                                                                                         GTGCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCAG     <  SRR4302537.264243/94‑1 (MQ=60)

                                                                                           GCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCAGTT   <  SRR4302537.6059450/94‑1 (MQ=60)

                                                                                           GCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCAGTT   <  SRR4302537.1313139/94‑1 (MQ=60)

                                                                                           GCGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCAGTT   <  SRR4302537.89731/94‑1 (MQ=60)

                                                                                            CGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCAGTTG  <  SRR4302537.2356398/94‑1 (MQ=60)

                                                                                            CGGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCAGTTG  <  SRR4302537.79602/94‑1 (MQ=60)

CAGGTTACCGTGCTGGCGTTCCAGTTTGGTGATGGCTTCAGTCACATCATTTACCCAACCTCAGCGTCGTTAATGGCAACGCTCGGTGTGTGCAGGGTGGACTTCCGTAACTGGCTGAAGGTGGGCGCGACCCTACTTGGACTGCTGTTTATTATGTCCAGCGTCGTAGTGATCGGCGCTCAGTTG  >  NC_000913/2416421‑2416606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`