Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,443,258 A→G V108A (GTC→GCC)  yfcA ← putative structural protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,443,2580AG100.0% 730.6 / NA 205V108A (GTC→GCC) yfcAputative structural protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (117/88);  total (117/88)

Only 100 of 209 total aligned reads displayed.

CGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGACATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTA  >  NC_000913/2443168‑2443347
                                                                                          |                                                                                         
cGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCa                                                                                         <  2:4436658/93‑1 (MQ=255)
cGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCa                                                                                         >  2:5313896/1‑93 (MQ=255)
 ggCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCAt                                                                                        >  1:5335024/1‑93 (MQ=255)
  gcgcTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATc                                                                                       >  2:1137888/1‑93 (MQ=255)
  gcgcTGGCGGACTTCTTCACCTAGCTATGGCATCAGCAAGAAAAAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATc                                                                                       <  2:6473993/93‑1 (MQ=255)
    gcTGGCGGTCGTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAg                                                                                     <  1:4641313/93‑1 (MQ=255)
     cTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGc                                                                                    >  2:3045614/1‑93 (MQ=255)
      tGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGcc                                                                                   <  2:6395286/93‑1 (MQ=255)
      tGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGcc                                                                                   <  1:2017234/93‑1 (MQ=255)
      tGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCAGATACAAATTACCAGAATGGGCAAAATCTGCCGTAACGCATCAGcc                                                                                   >  1:4118708/1‑93 (MQ=255)
         cGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGa                                                                                <  1:3819007/93‑1 (MQ=255)
          ggTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGaa                                                                               >  1:498825/1‑93 (MQ=255)
           gTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAAc                                                                              >  1:1443712/1‑93 (MQ=255)
           gTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAAc                                                                              >  2:3492251/1‑93 (MQ=255)
           gTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAAc                                                                              <  2:2390580/93‑1 (MQ=255)
            tcttctTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACg                                                                             >  2:189771/1‑93 (MQ=255)
             cttcttCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGt                                                                            >  2:1444535/1‑93 (MQ=255)
              ttcttcACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTa                                                                           <  1:5136077/93‑1 (MQ=255)
               tcttcACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTAt                                                                          <  1:4902018/93‑1 (MQ=255)
                cttcACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTAtt                                                                         >  2:6080088/1‑93 (MQ=255)
                 ttcACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTg                                                                        >  2:617806/1‑93 (MQ=255)
                  tcACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGc                                                                       <  1:3977537/93‑1 (MQ=255)
                    aCCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCAc                                                                     >  2:3945123/1‑93 (MQ=255)
                    aCCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCAc                                                                     >  1:3744585/1‑93 (MQ=255)
                     ccTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCAcc                                                                    >  1:6291189/1‑93 (MQ=255)
                      cTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACca                                                                   >  2:5218817/1‑93 (MQ=255)
                           tttGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGt                                                              >  2:5727689/1‑93 (MQ=255)
                            ttGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCAACAGCAGTg                                                             <  2:6324760/93‑1 (MQ=255)
                             tGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTgc                                                            <  1:3449557/93‑1 (MQ=255)
                              ggCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTgcg                                                           <  1:4743260/93‑1 (MQ=255)
                                cATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGcgcc                                                         >  1:526286/1‑93 (MQ=255)
                                  tCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGcgccgc                                                       >  1:4699352/1‑93 (MQ=255)
                                  tCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGcgccgc                                                       >  2:2083662/1‑93 (MQ=255)
                                  tCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGcgccgc                                                       <  2:4622797/93‑1 (MQ=255)
                                     gCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCa                                                    >  1:623552/1‑93 (MQ=255)
                                     gCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCa                                                    <  1:1601524/93‑1 (MQ=255)
                                      cAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCAt                                                   <  1:6005725/93‑1 (MQ=255)
                                       aaGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCAtt                                                  >  1:3071867/1‑93 (MQ=255)
                                       aaGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCAtt                                                  <  1:786886/93‑1 (MQ=255)
                                        aGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTg                                                 >  1:6168322/1‑93 (MQ=255)
                                         gAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGa                                                >  1:5399910/1‑93 (MQ=255)
                                         gAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGa                                                <  1:5530233/93‑1 (MQ=255)
                                           aaTAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGc                                              <  2:1205394/93‑1 (MQ=255)
                                            aTAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGcc                                             >  1:2426334/1‑93 (MQ=255)
                                             tAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCg                                            <  2:1610685/93‑1 (MQ=255)
                                               gagGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGAc                                          >  2:457907/1‑93 (MQ=255)
                                                  gCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACaaa                                       <  2:3276148/93‑1 (MQ=255)
                                                  gCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACaaa                                       >  1:3993179/1‑93 (MQ=255)
                                                  gCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACaaa                                       >  2:5258489/1‑93 (MQ=255)
                                                  gCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACaaa                                       <  2:4050132/93‑1 (MQ=255)
                                                    cGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAgg                                     >  2:2192791/1‑93 (MQ=255)
                                                      aTACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTTAGCCGACAAAggac                                   >  1:4586418/1‑91 (MQ=255)
                                                      aTACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTc                                   >  2:4280440/1‑93 (MQ=255)
                                                      aTACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTc                                   <  1:3413055/93‑1 (MQ=255)
                                                       tACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCa                                  <  1:4394713/93‑1 (MQ=255)
                                                       tACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCa                                  >  1:4179569/1‑93 (MQ=255)
                                                          aaaTTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGGGCGCCGCTCATTGAGCCGACAAAGGTCATgg                               >  1:3431614/1‑93 (MQ=255)
                                                           aaTTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGc                              >  1:850298/1‑93 (MQ=255)
                                                           aaTTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGc                              <  2:134947/93‑1 (MQ=255)
                                                             ttACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGa                            >  2:1103342/1‑93 (MQ=255)
                                                              tACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGat                           <  1:940499/93‑1 (MQ=255)
                                                               aCCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGata                          <  2:4173195/93‑1 (MQ=255)
                                                                ccAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGatat                         <  2:3017897/93‑1 (MQ=255)
                                                                ccAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGatat                         <  1:5465852/93‑1 (MQ=255)
                                                                ccAGAATGCGCAAAATCTACCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGatat                         <  2:779571/93‑1 (MQ=255)
                                                                  aGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTg                       <  1:5394509/93‑1 (MQ=255)
                                                                  aGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTg                       >  1:2762089/1‑93 (MQ=255)
                                                                  aGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTg                       >  1:2169908/1‑93 (MQ=255)
                                                                   gAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGa                      >  1:76736/1‑93 (MQ=255)
                                                                   gAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGa                      >  1:1789545/1‑93 (MQ=255)
                                                                   gAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGa                      >  1:229781/1‑93 (MQ=255)
                                                                    aaTGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAg                     <  2:2580523/93‑1 (MQ=255)
                                                                    aaTGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAg                     >  2:496084/1‑93 (MQ=255)
                                                                     aTGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGt                    <  2:5693441/93‑1 (MQ=255)
                                                                      tGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGtt                   >  1:2610105/1‑93 (MQ=255)
                                                                      tGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGtt                   >  2:1698988/1‑93 (MQ=255)
                                                                      tGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGtt                   <  1:2536899/93‑1 (MQ=255)
                                                                        gtcAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTc                 <  1:539754/91‑1 (MQ=255)
                                                                        ggCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTc                 >  1:1718516/1‑93 (MQ=255)
                                                                        ggCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTc                 <  2:5650443/93‑1 (MQ=255)
                                                                          cAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTg               <  2:5580354/93‑1 (MQ=255)
                                                                            aaaTCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGAt             <  1:5441787/93‑1 (MQ=255)
                                                                            aaaTCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGAt             >  1:1411440/1‑93 (MQ=255)
                                                                             aaTCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATc            >  2:4534946/1‑93 (MQ=255)
                                                                             aaTCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATc            <  2:4871112/93‑1 (MQ=255)
                                                                              aTCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCg           >  1:1568037/1‑93 (MQ=255)
                                                                              aTCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCg           >  1:3187649/1‑93 (MQ=255)
                                                                               tCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGc          >  2:271429/1‑93 (MQ=255)
                                                                               tCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGc          >  1:2970853/1‑93 (MQ=255)
                                                                               tCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGc          <  1:451737/93‑1 (MQ=255)
                                                                               tCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGc          >  2:1642296/1‑93 (MQ=255)
                                                                               ccTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGc          <  2:5844061/92‑1 (MQ=255)
                                                                                cTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCt         >  1:1308156/1‑93 (MQ=255)
                                                                                 tGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCtt        >  1:1118468/1‑93 (MQ=255)
                                                                                  gCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTa       <  2:3686182/93‑1 (MQ=255)
                                                                                   ccGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTaa      >  1:480987/1‑93 (MQ=255)
                                                                                    cGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTaaa     >  2:2780752/1‑93 (MQ=255)
                                                                                     gTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAAc    >  2:4813233/1‑93 (MQ=255)
                                                                                     gTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAAc    >  1:583636/1‑93 (MQ=255)
                                                                                      tAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACt   >  2:4490755/1‑93 (MQ=255)
                                                                                          |                                                                                         
CGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGACATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTA  >  NC_000913/2443168‑2443347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGACATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAACC  >  NC_000913/2443165‑2443350
                                                                                             |                                                                                            
ATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGG                                                                                              <  SRR4302537.4786292/94‑1 (MQ=60)
 TCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGC                                                                                             >  SRR4302537.5017639/1‑94 (MQ=60)
   CGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCAT                                                                                           >  SRR4302537.5371605/1‑94 (MQ=60)
      CGCTGGCGGTCTTCTTCACCTAGCTTGGGCATCAGCAAGAAATAGAGGCCGATACAATTTACCAGAGTGGGCAAAATCTGCCGTAAGGCATCAG                                                                                        <  SRR4302537.3534533/94‑1 (MQ=60)
       GCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGC                                                                                       <  SRR4302537.3462569/94‑1 (MQ=60)
       GCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGC                                                                                       <  SRR4302537.4971860/94‑1 (MQ=60)
       GCTGGCGGTCGTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGC                                                                                       <  SRR4302537.4673406/94‑1 (MQ=60)
        CTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCAGATACAAATTACCAGAATGGGCAAAATCTGCCGTAACGCATCAGCC                                                                                      >  SRR4302537.4147471/1‑94 (MQ=60)
         TGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCT                                                                                     <  SRR4302537.1399890/94‑1 (MQ=60)
         TGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCT                                                                                     <  SRR4302537.2031297/94‑1 (MQ=60)
            CGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAA                                                                                  >  SRR4302537.822522/1‑94 (MQ=60)
            CGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAA                                                                                  >  SRR4302537.502252/1‑94 (MQ=60)
            CGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAA                                                                                  >  SRR4302537.2104621/1‑94 (MQ=60)
            CGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAA                                                                                  <  SRR4302537.3845787/94‑1 (MQ=60)
             GGTCTTCTTCACCTAGCTTTGGCATCATCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAAC                                                                                 >  SRR4302537.2319169/1‑94 (MQ=60)
             GGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAAC                                                                                 <  SRR4302537.6254775/94‑1 (MQ=60)
             GGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAAC                                                                                 >  SRR4302537.3792924/1‑94 (MQ=60)
             GGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAAC                                                                                 >  SRR4302537.1453768/1‑94 (MQ=60)
             GGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAAC                                                                                 >  SRR4302537.1301216/1‑94 (MQ=60)
                CTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTA                                                                              >  SRR4302537.2823157/1‑94 (MQ=60)
                 TTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTAT                                                                             <  SRR4302537.5171465/94‑1 (MQ=60)
                  TCTTCGCCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATT                                                                            <  SRR4302537.4027202/94‑1 (MQ=60)
                  TCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATT                                                                            <  SRR4302537.4935854/94‑1 (MQ=60)
                    TTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGC                                                                          >  SRR4302537.2271910/1‑94 (MQ=60)
                     TCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCA                                                                         <  SRR4302537.4005375/94‑1 (MQ=60)
                      CACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCAC                                                                        >  SRR4302537.3770881/1‑94 (MQ=60)
                       ACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACC                                                                       >  SRR4302537.6334302/1‑94 (MQ=60)
                         CTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAG                                                                     >  SRR4302537.4161644/1‑94 (MQ=60)
                           AGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTTCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCA                                                                   >  SRR4302537.3201021/1‑94 (MQ=60)
                             CTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGT                                                                 <  SRR4302537.3439442/94‑1 (MQ=60)
                              TTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTG                                                                <  SRR4302537.1634064/94‑1 (MQ=60)
                                TGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCG                                                              <  SRR4302537.5047182/94‑1 (MQ=60)
                                TGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCG                                                              <  SRR4302537.3473957/94‑1 (MQ=60)
                                 GGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGC                                                             <  SRR4302537.4776040/94‑1 (MQ=60)
                                  GCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCC                                                            >  SRR4302537.3850752/1‑94 (MQ=60)
                                  GCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCC                                                            >  SRR4302537.529895/1‑94 (MQ=60)
                                    ATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGC                                                          >  SRR4302537.1434287/1‑94 (MQ=60)
                                    ATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGC                                                          >  SRR4302537.4731863/1‑94 (MQ=60)
                                     TCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCT                                                         >  SRR4302537.4623286/1‑94 (MQ=60)
                                       AGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCA                                                       >  SRR4302537.627799/1‑94 (MQ=60)
                                        GCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCTGTGCGCCGCTCAT                                                      <  SRR4302537.3510650/94‑1 (MQ=60)
                                        GCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCAT                                                      <  SRR4302537.1612720/94‑1 (MQ=60)
                                         CAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATT                                                     >  SRR4302537.3093267/1‑94 (MQ=60)
                                         CAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATT                                                     >  SRR4302537.6298671/1‑94 (MQ=60)
                                         CAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATT                                                     <  SRR4302537.6046984/94‑1 (MQ=60)
                                          AAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTG                                                    >  SRR4302537.6210796/1‑94 (MQ=60)
                                          AAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTG                                                    >  SRR4302537.2721601/1‑94 (MQ=60)
                                          AAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTG                                                    <  SRR4302537.792290/94‑1 (MQ=60)
                                           AGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGA                                                   >  SRR4302537.5436769/1‑94 (MQ=60)
                                            GAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAG                                                  <  SRR4302537.5567983/94‑1 (MQ=60)
                                             AAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGC                                                 >  SRR4302537.5361099/1‑94 (MQ=60)
                                              AATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCC                                                >  SRR4302537.2443427/1‑94 (MQ=60)
                                                TAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGA                                              >  SRR4302537.5857591/1‑94 (MQ=60)
                                                  GAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACA                                            <  SRR4302537.426671/94‑1 (MQ=60)
                                                   AGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAA                                           <  SRR4302537.2557759/94‑1 (MQ=60)
                                                   AGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAA                                           >  SRR4302537.3061779/1‑94 (MQ=60)
                                                    GGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAA                                          >  SRR4302537.4021136/1‑94 (MQ=60)
                                                      CCGATACAAATTACCAGAATGTGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGG                                        <  SRR4302537.5201387/94‑1 (MQ=60)
                                                      CCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGG                                        <  SRR4302537.1531148/94‑1 (MQ=60)
                                                        GATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTTAGCCGACAAAGGAC                                      >  SRR4302537.4618143/1‑94 (MQ=60)
                                                        GATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTC                                      <  SRR4302537.4607127/94‑1 (MQ=60)
                                                        GATACAAATGACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTC                                      <  SRR4302537.880705/94‑1 (MQ=60)
                                                         ATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCA                                     <  SRR4302537.3437225/94‑1 (MQ=60)
                                                         ATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCA                                     >  SRR4302537.4208743/1‑94 (MQ=60)
                                                          TACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCAT                                    <  SRR4302537.4425031/94‑1 (MQ=60)
                                                          TACAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCAT                                    >  SRR4302537.4003012/1‑94 (MQ=60)
                                                            CAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGG                                  >  SRR4302537.4912700/1‑94 (MQ=60)
                                                            CAAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGGGCGCCGCTCATTGAGCCGACAAAGGTCATGG                                  >  SRR4302537.3455902/1‑94 (MQ=60)
                                                             AAATTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGC                                 >  SRR4302537.856128/1‑94 (MQ=60)
                                                                TTACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGAT                              <  SRR4302537.1006330/94‑1 (MQ=60)
                                                                 TACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATA                             <  SRR4302537.946984/94‑1 (MQ=60)
                                                                  ACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATAT                            >  SRR4302537.5502992/1‑94 (MQ=60)
                                                                  ACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATAT                            >  SRR4302537.4019870/1‑94 (MQ=60)
                                                                  ACCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATAT                            >  SRR4302537.1980257/1‑94 (MQ=60)
                                                                   CCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATT                           >  SRR4302537.5441467/1‑94 (MQ=60)
                                                                   CCAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATT                           <  SRR4302537.5503133/94‑1 (MQ=60)
                                                                    CAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTG                          >  SRR4302537.2185200/1‑94 (MQ=60)
                                                                    CAGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTG                          >  SRR4302537.2781359/1‑94 (MQ=60)
                                                                     AGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGTGATATTGG                         >  SRR4302537.606134/1‑94 (MQ=60)
                                                                     AGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGA                         >  SRR4302537.77299/1‑94 (MQ=60)
                                                                     AGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGA                         <  SRR4302537.5431349/94‑1 (MQ=60)
                                                                     AGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGA                         >  SRR4302537.1802044/1‑94 (MQ=60)
                                                                     AGAATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGA                         >  SRR4302537.231406/1‑94 (MQ=60)
                                                                        ATGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTT                      >  SRR4302537.2628362/1‑94 (MQ=60)
                                                                         TGGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTT                     <  SRR4302537.2554700/94‑1 (MQ=60)
                                                                          GGGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTC                    >  SRR4302537.1730529/1‑94 (MQ=60)
                                                                           GTCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCT                   <  SRR4302537.543470/94‑1 (MQ=60)
                                                                           GGCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCT                   >  SRR4302537.2483223/1‑94 (MQ=60)
                                                                            GCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTG                  <  SRR4302537.4720215/94‑1 (MQ=60)
                                                                            GCAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTG                  <  SRR4302537.5862280/94‑1 (MQ=60)
                                                                             CAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGA                 >  SRR4302537.5419783/1‑94 (MQ=60)
                                                                             CAAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGA                 >  SRR4302537.5436530/1‑94 (MQ=60)
                                                                              AAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGAT                <  SRR4302537.1790573/94‑1 (MQ=60)
                                                                              AAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGAT                >  SRR4302537.1421271/1‑94 (MQ=60)
                                                                              AAAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGAT                <  SRR4302537.4747938/94‑1 (MQ=60)
                                                                               AAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATC               <  SRR4302537.5478908/94‑1 (MQ=60)
                                                                               AAATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATC               >  SRR4302537.4426473/1‑94 (MQ=60)
                                                                               AAATCTGCCGTAAGGCATCAGCCTGAACGTACTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATC               <  SRR4302537.3223856/94‑1 (MQ=60)
                                                                                AATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCG              <  SRR4302537.543319/94‑1 (MQ=60)
                                                                                AATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCG              >  SRR4302537.3210072/1‑94 (MQ=60)
                                                                                AATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCG              >  SRR4302537.1578979/1‑94 (MQ=60)
                                                                                 ATCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGC             >  SRR4302537.2991676/1‑94 (MQ=60)
                                                                                  TCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCT            <  SRR4302537.454863/94‑1 (MQ=60)
                                                                                  TCTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCT            >  SRR4302537.1317264/1‑94 (MQ=60)
                                                                                   CTGCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTT           >  SRR4302537.1126209/1‑94 (MQ=60)
                                                                                     GCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAA         >  SRR4302537.5912936/1‑94 (MQ=60)
                                                                                     GCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAA         >  SRR4302537.6399484/1‑94 (MQ=60)
                                                                                     GCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAA         <  SRR4302537.1612676/94‑1 (MQ=60)
                                                                                     GCCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAA         >  SRR4302537.484283/1‑94 (MQ=60)
                                                                                      CCGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAA        >  SRR4302537.2485805/1‑94 (MQ=60)
                                                                                       CGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAAC       >  SRR4302537.587624/1‑94 (MQ=60)
                                                                                       CGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAAC       <  SRR4302537.776674/94‑1 (MQ=60)
                                                                                       CGTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAAC       >  SRR4302537.4811439/1‑94 (MQ=60)
                                                                                        GTAAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACT      >  SRR4302537.4898865/1‑94 (MQ=60)
                                                                                          AAGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAA    <  SRR4302537.5532191/94‑1 (MQ=60)
                                                                                           AGGCATCAGCCTGACCGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCAGGGCGATATTGAGTTTCTGATCGCTTAAACTAAC   <  SRR4302537.2250226/94‑1 (MQ=60)
                                                                                           AGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAAC   >  SRR4302537.5552694/1‑94 (MQ=60)
                                                                                           AGGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAAC   <  SRR4302537.5308751/94‑1 (MQ=60)
                                                                                            GGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAACC  <  SRR4302537.507044/94‑1 (MQ=60)
                                                                                            GGCATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAACC  <  SRR4302537.3699746/94‑1 (MQ=60)
                                                                                             |                                                                                            
ATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGGCCGATACAAATTACCAGAATGGGCAAAATCTGCCGTAAGACATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAACC  >  NC_000913/2443165‑2443350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑