Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,555,797 G→A G301G (GGC→GGT)  b2441 ← ethanolamine ammonia‑lyase, heavy chain

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,555,7970GA100.0% 735.8 / NA 206G301G (GGC→GGT) b2441ethanolamine ammonia‑lyase, heavy chain
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (108/98);  total (108/98)

Only 100 of 209 total aligned reads displayed.

CCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCGCCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGCC  >  NC_000913/2555707‑2555886
                                                                                          |                                                                                         
cccAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCAcc                                                                                         >  1:5313880/1‑93 (MQ=255)
 ccAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCg                                                                                        >  2:2134139/1‑93 (MQ=255)
  cAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGa                                                                                       >  1:5829249/1‑93 (MQ=255)
   aaTAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGaa                                                                                      <  2:3553900/93‑1 (MQ=255)
   aaTAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGaa                                                                                      >  2:1667380/1‑93 (MQ=255)
    aTAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAg                                                                                     <  1:4211028/93‑1 (MQ=255)
    aTAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGATACGTGCTTCCATCGTTACCTGGTCTGCACCGAAg                                                                                     >  1:1699676/1‑93 (MQ=255)
       aaGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTa                                                                                  >  2:578610/1‑93 (MQ=255)
          ccGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAgcg                                                                               >  1:4404245/1‑93 (MQ=255)
           cGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAgcgc                                                                              <  1:708489/93‑1 (MQ=255)
             aCCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCa                                                                            <  1:5422013/93‑1 (MQ=255)
              ccACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAg                                                                           <  2:3326598/93‑1 (MQ=255)
               cACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGc                                                                          <  2:3870498/93‑1 (MQ=255)
                aCGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCg                                                                         <  1:1002436/93‑1 (MQ=255)
                 cGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCgg                                                                        >  1:1494790/1‑93 (MQ=255)
                   gtgtTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGAt                                                                      <  2:4563906/93‑1 (MQ=255)
                    tgtTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATa                                                                     <  2:191135/93‑1 (MQ=255)
                    tgtTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATa                                                                     <  2:2915595/93‑1 (MQ=255)
                    tgtTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATa                                                                     >  2:548448/1‑93 (MQ=255)
                    tgtTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATa                                                                     <  1:416064/93‑1 (MQ=255)
                     gtTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAg                                                                    <  1:297867/93‑1 (MQ=255)
                     gtTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAg                                                                    >  1:1258726/1‑93 (MQ=255)
                     gtTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAg                                                                    <  1:638442/93‑1 (MQ=255)
                      ttGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAgc                                                                   <  1:5949727/93‑1 (MQ=255)
                       tGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAgcg                                                                  >  2:1225770/1‑93 (MQ=255)
                           gATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCaga                                                              <  2:3700183/93‑1 (MQ=255)
                            aTAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCagag                                                             <  1:1337574/93‑1 (MQ=255)
                               aaCGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCt                                                          <  2:2235287/93‑1 (MQ=255)
                                aCGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCtt                                                         <  1:3064197/93‑1 (MQ=255)
                                aCGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCtt                                                         >  2:1418718/1‑93 (MQ=255)
                                 cGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCTGAGCCTTg                                                        <  2:6309886/93‑1 (MQ=255)
                                  ggATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGt                                                       >  1:5911742/1‑93 (MQ=255)
                                   gATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTc                                                      <  1:5729683/93‑1 (MQ=255)
                                    aTCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTcc                                                     >  1:5348923/1‑93 (MQ=255)
                                     tCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCg                                                    >  1:4238926/1‑93 (MQ=255)
                                     tCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCg                                                    >  2:4403864/1‑93 (MQ=255)
                                     tCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCg                                                    >  2:2651706/1‑93 (MQ=255)
                                     tCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCg                                                    <  2:3990961/93‑1 (MQ=255)
                                       gTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGt                                                  <  1:3213015/93‑1 (MQ=255)
                                          aTGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTc                                               >  1:259036/1‑93 (MQ=255)
                                            gACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGa                                             >  1:3580455/1‑93 (MQ=255)
                                            gACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGa                                             >  1:3895826/1‑93 (MQ=255)
                                            gACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGa                                             <  2:5008474/93‑1 (MQ=255)
                                             aCGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGaa                                            <  2:2491489/93‑1 (MQ=255)
                                             aCGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGaa                                            <  1:2378398/93‑1 (MQ=255)
                                             aCGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGaa                                            <  1:2313507/93‑1 (MQ=255)
                                             aCGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGaa                                            <  1:782146/93‑1 (MQ=255)
                                              cgcgCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAg                                           <  1:2442471/93‑1 (MQ=255)
                                                cgcCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTa                                         <  2:4486972/93‑1 (MQ=255)
                                                  ccAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTaga                                       <  1:2096107/93‑1 (MQ=255)
                                                    aGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAgg                                     <  1:293065/93‑1 (MQ=255)
                                                     gCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGc                                    <  2:6173862/93‑1 (MQ=255)
                                                      cccGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCa                                   <  2:5101543/93‑1 (MQ=255)
                                                       ccGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAg                                  <  2:4788095/93‑1 (MQ=255)
                                                        cGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGt                                 >  2:6179248/1‑93 (MQ=255)
                                                         gTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGtt                                >  2:5069077/1‑93 (MQ=255)
                                                          tAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGttt                               <  1:5275243/93‑1 (MQ=255)
                                                            gTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTc                             >  1:4350304/1‑93 (MQ=255)
                                                            gTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTc                             >  2:1500237/1‑93 (MQ=255)
                                                            gTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTc                             >  1:2226165/1‑93 (MQ=255)
                                                             ttACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTcc                            >  2:3740863/1‑93 (MQ=255)
                                                             ttACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTcc                            >  2:591646/1‑93 (MQ=255)
                                                             ttACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTcc                            <  2:4046419/93‑1 (MQ=255)
                                                             ttACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTcc                            >  1:5034491/1‑93 (MQ=255)
                                                              tACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTccc                           <  2:6155354/93‑1 (MQ=255)
                                                               aCGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTcccc                          >  1:3281954/1‑93 (MQ=255)
                                                               aCGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTcccc                          <  2:2316591/93‑1 (MQ=255)
                                                               aCGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTcccc                          >  2:6022510/1‑93 (MQ=255)
                                                               aCGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTcccc                          >  1:1447123/1‑93 (MQ=255)
                                                                 gTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCgg                        >  2:3640089/1‑93 (MQ=255)
                                                                 gTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCgg                        >  2:1846325/1‑93 (MQ=255)
                                                                  tGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGc                       >  1:4781688/1‑93 (MQ=255)
                                                                  tGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGc                       <  1:1308533/93‑1 (MQ=255)
                                                                  tGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGc                       >  1:2813136/1‑93 (MQ=255)
                                                                   gCTTCCATCGTTACCTGGTCTGAACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGCAGTAGAGGCAGCTTTCCCCcgcg                      >  2:842106/1‑93 (MQ=255)
                                                                     ttCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGAt                    <  2:706335/93‑1 (MQ=255)
                                                                     ttCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGAt                    >  2:196363/1‑93 (MQ=255)
                                                                      tCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATa                   >  2:3097654/1‑93 (MQ=255)
                                                                      tCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATa                   <  2:2498298/93‑1 (MQ=255)
                                                                       ccATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATAc                  <  1:6201700/93‑1 (MQ=255)
                                                                        cATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACg                 <  2:5544828/93‑1 (MQ=255)
                                                                        cATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACg                 <  1:5486233/93‑1 (MQ=255)
                                                                          tCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGt               <  2:1359025/93‑1 (MQ=255)
                                                                          tCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGt               >  2:5338824/1‑93 (MQ=255)
                                                                           cGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGtt              <  2:5157189/93‑1 (MQ=255)
                                                                           cGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGtt              <  1:5600448/93‑1 (MQ=255)
                                                                             ttACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGa            >  2:2019718/1‑93 (MQ=255)
                                                                             ttACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGa            >  1:4737583/1‑93 (MQ=255)
                                                                             ttACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGa            >  1:4423181/1‑93 (MQ=255)
                                                                              tACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGaa           <  1:4847757/93‑1 (MQ=255)
                                                                                ccTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACt         >  2:1007178/1‑93 (MQ=255)
                                                                                 cTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGATGCAGTTTTCCCCGGCGATACGGTTGAACTc        <  2:6102632/93‑1 (MQ=255)
                                                                                 cTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTc        >  1:3538316/1‑93 (MQ=255)
                                                                                  tGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTcc       <  2:4208844/93‑1 (MQ=255)
                                                                                  tGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTcc       <  2:6399165/93‑1 (MQ=255)
                                                                                   ggTCTGCGCCGACGTAAGCGCCGGGGGCTAGCGCAGAGCCTTGTCCGGGTTCGGAGGAGAGGCAGCTTTCCGCGGAGATGCGGGTGAACTccc      >  2:1725792/1‑92 (MQ=255)
                                                                                    gTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCcgc     <  1:6258877/93‑1 (MQ=255)
                                                                                     tCTGCACCGAAGTTAGCGCCAGCGGATAGCGCACAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCcgcg    >  1:1092837/1‑93 (MQ=255)
                                                                                       tGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCcgcggc  >  2:350297/1‑91 (MQ=255)
                                                                                       tGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGcc  >  1:1984891/1‑93 (MQ=255)
                                                                                          |                                                                                         
CCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCGCCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGCC  >  NC_000913/2555707‑2555886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCGCCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGCCCACT  >  NC_000913/2555705‑2555890
                                                                                            |                                                                                             
GGCCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCAC                                                                                              >  SRR4302537.2875988/1‑94 (MQ=60)
GGCCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCAC                                                                                              <  SRR4302537.3926191/94‑1 (MQ=60)
GGCCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCAC                                                                                              >  SRR4302537.4158093/1‑94 (MQ=60)
GGCCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCAC                                                                                              >  SRR4302537.1584188/1‑94 (MQ=60)
 GCCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACC                                                                                             >  SRR4302537.5350375/1‑94 (MQ=60)
  CCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCG                                                                                            >  SRR4302537.3279081/1‑94 (MQ=60)
   CCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGA                                                                                           >  SRR4302537.5869206/1‑94 (MQ=60)
     AATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGATACGTGCTTCCATCGTTACCTGGTCTGCACCGAAG                                                                                         >  SRR4302537.1711559/1‑94 (MQ=60)
      ATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGT                                                                                        <  SRR4302537.1277610/94‑1 (MQ=60)
      ATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGT                                                                                        <  SRR4302537.4240399/94‑1 (MQ=60)
        AAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTA                                                                                      <  SRR4302537.3463636/94‑1 (MQ=60)
          AGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGC                                                                                    <  SRR4302537.4300252/94‑1 (MQ=60)
           GCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCG                                                                                   >  SRR4302537.4434635/1‑94 (MQ=60)
           GCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCG                                                                                   <  SRR4302537.5410888/94‑1 (MQ=60)
           GCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCG                                                                                   <  SRR4302537.1631911/94‑1 (MQ=60)
            CCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGC                                                                                  >  SRR4302537.1862107/1‑94 (MQ=60)
             CGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCC                                                                                 <  SRR4302537.6116806/94‑1 (MQ=60)
             CGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCC                                                                                 <  SRR4302537.713338/94‑1 (MQ=60)
               ACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAG                                                                               <  SRR4302537.5458958/94‑1 (MQ=60)
                 CACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCG                                                                             >  SRR4302537.463547/1‑94 (MQ=60)
                 CACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACAGCAGTTAGCGCCAGCG                                                                             >  SRR4302537.712186/1‑94 (MQ=60)
                  ACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGG                                                                            <  SRR4302537.1009353/94‑1 (MQ=60)
                  ACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGG                                                                            >  SRR4302537.1505207/1‑94 (MQ=60)
                      TGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAG                                                                        >  SRR4302537.730264/1‑94 (MQ=60)
                      TGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAG                                                                        >  SRR4302537.1267485/1‑94 (MQ=60)
                      TGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAG                                                                        <  SRR4302537.418952/94‑1 (MQ=60)
                       GTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGC                                                                       <  SRR4302537.576115/94‑1 (MQ=60)
                       GTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGC                                                                       <  SRR4302537.299942/94‑1 (MQ=60)
                       GTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGC                                                                       <  SRR4302537.642788/94‑1 (MQ=60)
                       GTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGC                                                                       >  SRR4302537.5875523/1‑94 (MQ=60)
                        TTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCG                                                                      <  SRR4302537.5990569/94‑1 (MQ=60)
                         TGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGC                                                                     >  SRR4302537.2341246/1‑94 (MQ=60)
                           ACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAG                                                                   <  SRR4302537.1085070/94‑1 (MQ=60)
                            CGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGA                                                                  >  SRR4302537.3117249/1‑94 (MQ=60)
                            CGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGA                                                                  >  SRR4302537.4451435/1‑94 (MQ=60)
                              ATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGC                                                                <  SRR4302537.1346891/94‑1 (MQ=60)
                                AAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCT                                                              <  SRR4302537.2969270/94‑1 (MQ=60)
                                  ACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTG                                                            <  SRR4302537.2275984/94‑1 (MQ=60)
                                  ACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTG                                                            <  SRR4302537.3085544/94‑1 (MQ=60)
                                   CGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGT                                                           <  SRR4302537.53729/94‑1 (MQ=60)
                                   CGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGT                                                           >  SRR4302537.5952307/1‑94 (MQ=60)
                                     GATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCC                                                         <  SRR4302537.626148/94‑1 (MQ=60)
                                     GATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCC                                                         <  SRR4302537.5963358/94‑1 (MQ=60)
                                     GATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCC                                                         >  SRR4302537.5385571/1‑94 (MQ=60)
                                     GATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCC                                                         <  SRR4302537.5768906/94‑1 (MQ=60)
                                      ATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCG                                                        >  SRR4302537.4268404/1‑94 (MQ=60)
                                       TCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGG                                                       >  SRR4302537.5318383/1‑94 (MQ=60)
                                        CGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGT                                                      <  SRR4302537.4039080/94‑1 (MQ=60)
                                         GTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTT                                                     <  SRR4302537.3235622/94‑1 (MQ=60)
                                          TAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTT                                                    <  SRR4302537.1410052/94‑1 (MQ=60)
                                          TAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTT                                                    <  SRR4302537.3757756/94‑1 (MQ=60)
                                           AATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTC                                                   >  SRR4302537.4210655/1‑94 (MQ=60)
                                           AATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTC                                                   >  SRR4302537.260868/1‑94 (MQ=60)
                                             TGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGA                                                 >  SRR4302537.3923061/1‑94 (MQ=60)
                                             TGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGA                                                 >  SRR4302537.3605697/1‑94 (MQ=60)
                                               ACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAG                                               <  SRR4302537.2395155/94‑1 (MQ=60)
                                               ACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAG                                               <  SRR4302537.2329836/94‑1 (MQ=60)
                                               ACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAG                                               <  SRR4302537.4423643/94‑1 (MQ=60)
                                               ACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAG                                               <  SRR4302537.787517/94‑1 (MQ=60)
                                                CGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGT                                              >  SRR4302537.2361647/1‑94 (MQ=60)
                                                CGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGT                                              <  SRR4302537.2459665/94‑1 (MQ=60)
                                                  CGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAG                                            <  SRR4302537.4947439/94‑1 (MQ=60)
                                                   GCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGA                                           >  SRR4302537.1197281/1‑94 (MQ=60)
                                                    CCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAG                                          <  SRR4302537.942059/94‑1 (MQ=60)
                                                    CCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAG                                          <  SRR4302537.2110886/94‑1 (MQ=60)
                                                      AGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGC                                        <  SRR4302537.295107/94‑1 (MQ=60)
                                                        CCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAG                                      >  SRR4302537.1342030/1‑94 (MQ=60)
                                                           GTAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTT                                   >  SRR4302537.5867470/1‑94 (MQ=60)
                                                            TAGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTT                                  <  SRR4302537.5311546/94‑1 (MQ=60)
                                                             AGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTC                                 >  SRR4302537.2241865/1‑94 (MQ=60)
                                                             AGTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTC                                 >  SRR4302537.4380444/1‑94 (MQ=60)
                                                              GTTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCC                                >  SRR4302537.5069151/1‑94 (MQ=60)
                                                               TTACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCC                               >  SRR4302537.2001639/1‑94 (MQ=60)
                                                                TACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCC                              >  SRR4302537.3305123/1‑94 (MQ=60)
                                                                TACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCC                              >  SRR4302537.1457207/1‑94 (MQ=60)
                                                                 ACGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCG                             >  SRR4302537.2423406/1‑94 (MQ=60)
                                                                  CGTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGG                            >  SRR4302537.2575054/1‑94 (MQ=60)
                                                                   GTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGC                           >  SRR4302537.2832806/1‑94 (MQ=60)
                                                                   GTGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGC                           >  SRR4302537.4814697/1‑94 (MQ=60)
                                                                    TGCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCG                          <  SRR4302537.1317641/94‑1 (MQ=60)
                                                                     GCTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGA                         >  SRR4302537.2128798/1‑94 (MQ=60)
                                                                      CTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGAT                        <  SRR4302537.3880290/94‑1 (MQ=60)
                                                                      CTTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGAT                        >  SRR4302537.2693669/1‑94 (MQ=60)
                                                                       TTCCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATA                       >  SRR4302537.1493983/1‑94 (MQ=60)
                                                                         CCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACG                     <  SRR4302537.6244441/94‑1 (MQ=60)
                                                                         CCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACG                     <  SRR4302537.6244442/94‑1 (MQ=60)
                                                                         CCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACG                     >  SRR4302537.4254437/1‑94 (MQ=60)
                                                                         CCATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACG                     <  SRR4302537.3573932/94‑1 (MQ=60)
                                                                          CATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGG                    <  SRR4302537.5523682/94‑1 (MQ=60)
                                                                           ATCGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGT                   >  SRR4302537.4811316/1‑94 (MQ=60)
                                                                             CGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTG                 <  SRR4302537.292350/94‑1 (MQ=60)
                                                                             CGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTG                 <  SRR4302537.3041915/94‑1 (MQ=60)
                                                                             CGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTG                 <  SRR4302537.5638735/94‑1 (MQ=60)
                                                                             CGTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTG                 >  SRR4302537.5087090/1‑94 (MQ=60)
                                                                              GTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGA                >  SRR4302537.4453730/1‑94 (MQ=60)
                                                                              GTTACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGA                >  SRR4302537.4770331/1‑94 (MQ=60)
                                                                                TACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAAC              <  SRR4302537.4881212/94‑1 (MQ=60)
                                                                                 ACCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACT             >  SRR4302537.5555052/1‑94 (MQ=60)
                                                                                  CCTGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTC            >  SRR4302537.3563306/1‑94 (MQ=60)
                                                                                    TGGTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCG          <  SRR4302537.6362205/94‑1 (MQ=60)
                                                                                      GTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCG        <  SRR4302537.6301855/94‑1 (MQ=60)
                                                                                      GTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCG        <  SRR4302537.4834759/94‑1 (MQ=60)
                                                                                      GTCTGCACCGAAGTTAGCGCCAGCGGATAGCGCACAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCG        >  SRR4302537.1100383/1‑94 (MQ=60)
                                                                                        CTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGCC      >  SRR4302537.1998684/1‑94 (MQ=60)
                                                                                        CTGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGCC      >  SRR4302537.5202471/1‑94 (MQ=60)
                                                                                         TGCACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGCCC     <  SRR4302537.5503434/94‑1 (MQ=60)
                                                                                            ACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGCCCACT  >  SRR4302537.6391575/1‑94 (MQ=60)
                                                                                            ACCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGCCCACT  >  SRR4302537.5723905/1‑94 (MQ=60)
                                                                                            |                                                                                             
GGCCCAATAAAGCCGACCACGGTGTTGACGATAAACGGATCGTAATGACGCGCCAGCCCGTAGTTACGTGCTTCCATCGTTACCTGGTCTGCGCCGAAGTTAGCGCCAGCGGATAGCGCAGAGCCTTGTCCGGTTTCGAAGTAGAGGCAGTTTTCCCCGGCGATACGGTTGAACTCCGCGCCCACT  >  NC_000913/2555705‑2555890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑