Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,627,272 A→G G7G (GGT→GGC)  b4538 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,627,2720AG100.0% 911.5 / NA 259G7G (GGT→GGC) b4538hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (139/120);  total (139/120)

Only 100 of 262 total aligned reads displayed.

AACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGA  >  NC_000913/2627182‑2627361
                                                                                          |                                                                                         
   ttCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTc                                                                                      >  2:5350776/1‑93 (MQ=255)
   ttCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTc                                                                                      >  2:4464086/1‑93 (MQ=255)
   ttCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTc                                                                                      >  1:3401142/1‑93 (MQ=255)
    tCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTcc                                                                                     >  2:211939/1‑93 (MQ=255)
    tCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTcc                                                                                     <  1:4566317/93‑1 (MQ=255)
    tCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTcc                                                                                     >  1:3743710/1‑93 (MQ=255)
     ccATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCca                                                                                    <  1:828388/93‑1 (MQ=255)
      cATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCcac                                                                                   <  1:519489/93‑1 (MQ=255)
      cATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCcac                                                                                   <  2:4545990/93‑1 (MQ=255)
       aTAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCcaca                                                                                  >  2:1832686/1‑93 (MQ=255)
       aTAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCcaca                                                                                  >  2:5609202/1‑93 (MQ=255)
        tAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAg                                                                                 <  2:672542/93‑1 (MQ=255)
         aaCATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGc                                                                                <  1:1083764/93‑1 (MQ=255)
          aCATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCg                                                                               >  1:4264014/1‑93 (MQ=255)
            aTTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTg                                                                             <  2:4642599/93‑1 (MQ=255)
             ttAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTgg                                                                            <  2:5886391/93‑1 (MQ=255)
              tAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTggg                                                                           <  1:6219360/93‑1 (MQ=255)
                aaaTATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGAc                                                                         >  1:1620469/1‑93 (MQ=255)
                  atatGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACAt                                                                       <  1:5434195/93‑1 (MQ=255)
                   tatGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATa                                                                      <  1:2976880/93‑1 (MQ=255)
                   tatGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATa                                                                      >  1:3822106/1‑93 (MQ=255)
                   tatGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGCGCCGTCCACAGCGTGGGACATa                                                                      >  2:6155471/1‑93 (MQ=255)
                    atGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATAc                                                                     <  1:2437563/93‑1 (MQ=255)
                     tGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACt                                                                    >  1:3234824/1‑93 (MQ=255)
                     tGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACt                                                                    >  1:1447407/1‑93 (MQ=255)
                     tGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACt                                                                    >  1:430942/1‑93 (MQ=255)
                      gTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACtt                                                                   >  2:2401749/1‑93 (MQ=255)
                       tATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTc                                                                  >  1:4167336/1‑93 (MQ=255)
                       tATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTc                                                                  <  2:1971597/93‑1 (MQ=255)
                         tCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCaa                                                                <  1:5011332/93‑1 (MQ=255)
                         tCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCaa                                                                >  2:3869894/1‑93 (MQ=255)
                          ccACTGACGCTTTTTTACATAACGGAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAg                                                               >  2:1918300/1‑93 (MQ=255)
                           cACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAgg                                                              >  2:1162144/1‑93 (MQ=255)
                           cACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGACCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAgg                                                              >  2:5259940/1‑93 (MQ=255)
                            aCTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGa                                                             >  1:708546/1‑93 (MQ=255)
                             cTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGaa                                                            >  2:5990685/1‑93 (MQ=255)
                             cTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGaa                                                            >  1:362713/1‑93 (MQ=255)
                             cTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGaa                                                            >  1:2740116/1‑93 (MQ=255)
                             cTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGaa                                                            <  1:5676554/93‑1 (MQ=255)
                              tGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAc                                                           >  2:2484537/1‑93 (MQ=255)
                               gACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAcc                                                          >  1:3068483/1‑93 (MQ=255)
                               gACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAcc                                                          >  2:2815277/1‑93 (MQ=255)
                               gACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAcc                                                          <  1:6335913/93‑1 (MQ=255)
                                aCGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCt                                                         <  2:1887421/93‑1 (MQ=255)
                                aCGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCt                                                         <  2:4176077/93‑1 (MQ=255)
                                 cGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCtt                                                        <  1:4526759/93‑1 (MQ=255)
                                  gCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCttt                                                       <  2:4924505/93‑1 (MQ=255)
                                    ttttttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtg                                                     <  2:1557006/93‑1 (MQ=255)
                                     tttttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtgt                                                    <  2:3527531/93‑1 (MQ=255)
                                     tttttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtgt                                                    >  1:3447859/1‑93 (MQ=255)
                                      ttttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtgtg                                                   <  1:4024185/93‑1 (MQ=255)
                                      ttttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtgtg                                                   <  2:3031310/93‑1 (MQ=255)
                                       tttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtgtgg                                                  <  1:5830255/93‑2 (MQ=255)
                                         tACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGt                                                <  2:753010/93‑1 (MQ=255)
                                         tACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGt                                                >  1:6414358/1‑93 (MQ=255)
                                         tACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGt                                                >  1:3190723/1‑93 (MQ=255)
                                          aCATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTc                                               >  2:3150857/1‑93 (MQ=255)
                                           cATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCa                                              <  1:2535211/93‑1 (MQ=255)
                                              aaCGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGc                                           >  2:5037669/1‑93 (MQ=255)
                                               aCGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCa                                          >  2:3685049/1‑93 (MQ=255)
                                               aCGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCa                                          >  1:1765988/1‑93 (MQ=255)
                                                   agaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCa                                      <  1:5367496/93‑1 (MQ=255)
                                                    gaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAg                                     >  1:6069313/1‑93 (MQ=255)
                                                    gaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAg                                     >  1:4762528/1‑93 (MQ=255)
                                                     aaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGt                                    <  1:388160/93‑1 (MQ=255)
                                                       ttGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAt                                  <  2:6240006/93‑1 (MQ=255)
                                                       ttGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAt                                  <  1:3305280/93‑1 (MQ=255)
                                                       ttGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAt                                  >  1:5919937/1‑93 (MQ=255)
                                                         taCCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGc                                <  2:5384860/92‑1 (MQ=255)
                                                         gACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGc                                <  2:5430369/93‑1 (MQ=255)
                                                          aCCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCg                               >  2:3739725/1‑93 (MQ=255)
                                                            cATTTTGTCCTGTGGCGCCTTAATGTAAGTGCCGTCCGCAGCGTGGGACATACTTCAAGGACCCTTTTGTGGGTCAGGCAACCAGTATGCGaa                             <  2:2238663/93‑1 (MQ=255)
                                                              ttttGTCCTGTTGCGCCTTAGTGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGaaaa                           <  2:1759633/93‑1 (MQ=255)
                                                              ttttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGaaaa                           <  2:3255825/93‑1 (MQ=255)
                                                               tttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAc                          <  1:5657692/93‑1 (MQ=255)
                                                               tttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAc                          >  1:4456947/1‑93 (MQ=255)
                                                               tttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAc                          >  2:5847806/1‑93 (MQ=255)
                                                               tttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAc                          <  2:3186215/93‑1 (MQ=255)
                                                               tttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAc                          <  2:2881670/93‑1 (MQ=255)
                                                                ttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACg                         <  2:1477857/93‑1 (MQ=255)
                                                                 tGTCCTGTTGCTCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGa                        <  2:5479389/93‑1 (MQ=255)
                                                                 tGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGa                        >  2:4810014/1‑93 (MQ=255)
                                                                    ccTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGacac                     >  2:4111854/1‑93 (MQ=255)
                                                                     cTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACAcc                    >  2:6027607/1‑93 (MQ=255)
                                                                      tgttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCg                   >  1:4600879/1‑93 (MQ=255)
                                                                      tgttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCg                   <  2:5712863/93‑1 (MQ=255)
                                                                       gttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGa                  >  2:910564/1‑93 (MQ=255)
                                                                       gttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGa                  <  1:133066/93‑1 (MQ=255)
                                                                        ttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAt                 <  2:6427585/93‑1 (MQ=255)
                                                                        ttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAt                 <  1:1261554/93‑1 (MQ=255)
                                                                             ccTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAAc            <  2:4320447/93‑1 (MQ=255)
                                                                              cTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACa           >  2:1265542/1‑93 (MQ=255)
                                                                               ttAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAg          <  1:677215/93‑1 (MQ=255)
                                                                                tAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGt         <  1:5116852/93‑1 (MQ=255)
                                                                                 aaTGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTc        >  2:4009750/1‑93 (MQ=255)
                                                                                 aaTGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTGAACAGTc        >  1:3734513/1‑93 (MQ=255)
                                                                                  aTGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCg       <  1:1353187/93‑1 (MQ=255)
                                                                                    gTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCa     <  1:1837080/93‑1 (MQ=255)
                                                                                     tAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCAt    >  1:2112775/1‑93 (MQ=255)
                                                                                     tAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCAt    <  1:1510279/93‑1 (MQ=255)
                                                                                          |                                                                                         
AACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGA  >  NC_000913/2627182‑2627361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCG  >  NC_000913/2627179‑2627365
                                                                                             |                                                                                             
ATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTG                                                                                               <  SRR4302537.1016541/94‑1 (MQ=60)
ATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTG                                                                                               >  SRR4302537.4000655/1‑94 (MQ=60)
ATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTG                                                                                               >  SRR4302537.5038400/1‑94 (MQ=60)
  TAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCC                                                                                             >  SRR4302537.1827622/1‑94 (MQ=60)
  TAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCC                                                                                             <  SRR4302537.2702372/94‑1 (MQ=60)
  TAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCC                                                                                             >  SRR4302537.6119671/1‑94 (MQ=60)
   AACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCG                                                                                            >  SRR4302537.2069629/1‑94 (MQ=60)
     CTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTC                                                                                          >  SRR4302537.3349460/1‑94 (MQ=60)
     CTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTC                                                                                          >  SRR4302537.3425233/1‑94 (MQ=60)
      TTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCC                                                                                         <  SRR4302537.2320505/94‑1 (MQ=60)
      TTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCC                                                                                         >  SRR4302537.3769998/1‑94 (MQ=60)
       TCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCA                                                                                        <  SRR4302537.1491515/94‑1 (MQ=60)
       TCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCA                                                                                        <  SRR4302537.5810416/94‑1 (MQ=60)
       TCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCA                                                                                        <  SRR4302537.4597924/94‑1 (MQ=60)
       TCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCA                                                                                        <  SRR4302537.4739273/94‑1 (MQ=60)
        CCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCAC                                                                                       <  SRR4302537.5225495/94‑1 (MQ=60)
        CCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCAC                                                                                       <  SRR4302537.834062/94‑1 (MQ=60)
         CATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACA                                                                                      <  SRR4302537.523064/94‑1 (MQ=60)
          ATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAG                                                                                     <  SRR4302537.250692/94‑1 (MQ=60)
           TAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGC                                                                                    <  SRR4302537.43051/94‑1 (MQ=60)
           TAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGC                                                                                    <  SRR4302537.574029/94‑1 (MQ=60)
            AACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCG                                                                                   <  SRR4302537.1091242/94‑1 (MQ=60)
            AACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCG                                                                                   <  SRR4302537.6468408/94‑1 (MQ=60)
            AACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCG                                                                                   >  SRR4302537.4293643/1‑94 (MQ=60)
              CATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTG                                                                                 >  SRR4302537.4041416/1‑94 (MQ=60)
               ATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGG                                                                                <  SRR4302537.5654894/94‑1 (MQ=60)
               ATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGG                                                                                >  SRR4302537.3143366/1‑94 (MQ=60)
                TTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGG                                                                               <  SRR4302537.1503868/94‑1 (MQ=60)
                 TAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGA                                                                              <  SRR4302537.6262179/94‑1 (MQ=60)
                  AAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGAC                                                                             <  SRR4302537.3456668/94‑1 (MQ=60)
                  AAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGAC                                                                             >  SRR4302537.1631797/1‑94 (MQ=60)
                    AATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGCCAT                                                                           >  SRR4302537.4035309/1‑94 (MQ=60)
                    AATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACAT                                                                           <  SRR4302537.6454780/94‑1 (MQ=60)
                    AATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACAT                                                                           <  SRR4302537.790968/94‑1 (MQ=60)
                     ATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATA                                                                          >  SRR4302537.3848904/1‑94 (MQ=60)
                     ATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATA                                                                          >  SRR4302537.6033458/1‑94 (MQ=60)
                     ATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATA                                                                          <  SRR4302537.5471263/94‑1 (MQ=60)
                      TATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATAC                                                                         <  SRR4302537.2997713/94‑1 (MQ=60)
                       ATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACT                                                                        >  SRR4302537.1457492/1‑94 (MQ=60)
                       ATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACT                                                                        >  SRR4302537.433944/1‑94 (MQ=60)
                       ATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACT                                                                        >  SRR4302537.3257624/1‑94 (MQ=60)
                       ATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACT                                                                        <  SRR4302537.2454734/94‑1 (MQ=60)
                         GTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTC                                                                      >  SRR4302537.4196442/1‑94 (MQ=60)
                          TATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCA                                                                     <  SRR4302537.1404092/94‑1 (MQ=60)
                            TCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAG                                                                   <  SRR4302537.5045856/94‑1 (MQ=60)
                              CACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGA                                                                 >  SRR4302537.4346836/1‑94 (MQ=60)
                              CACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGA                                                                 >  SRR4302537.713395/1‑94 (MQ=60)
                              CACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGA                                                                 >  SRR4302537.6319823/1‑94 (MQ=60)
                              CACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGA                                                                 >  SRR4302537.5031827/1‑94 (MQ=60)
                               ACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAA                                                                >  SRR4302537.365235/1‑94 (MQ=60)
                               ACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAA                                                                >  SRR4302537.3343491/1‑94 (MQ=60)
                               ACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAA                                                                >  SRR4302537.2759236/1‑94 (MQ=60)
                                CTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAC                                                               <  SRR4302537.5715393/94‑1 (MQ=60)
                                 TGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACC                                                              >  SRR4302537.3089864/1‑94 (MQ=60)
                                  GACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCT                                                             >  SRR4302537.4243086/1‑94 (MQ=60)
                                  GACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCT                                                             <  SRR4302537.6379225/94‑1 (MQ=60)
                                    CGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTT                                                           <  SRR4302537.4558078/94‑1 (MQ=60)
                                    CGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTT                                                           <  SRR4302537.2958250/94‑1 (MQ=60)
                                    CGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTT                                                           >  SRR4302537.4177642/1‑94 (MQ=60)
                                    CGCTTTTTTACATAACGAAGAATTGACCATCTTGGCCTGTTGCGCCATCATGTAAGTGCCGTCCACAGCGTAGGACATACTTTCAGGAACCTTT                                                           >  SRR4302537.176565/1‑94 (MQ=53)
                                       TTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGT                                                        >  SRR4302537.3472248/1‑94 (MQ=60)
                                       TTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGT                                                        >  SRR4302537.3812542/1‑94 (MQ=60)
                                       TTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGG                                                        >  SRR4302537.373008/1‑94 (MQ=60)
                                         TTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGG                                                      <  SRR4302537.4052358/94‑1 (MQ=60)
                                          TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGTGACATACTTCAAGGAACCTTTTGTGGG                                                     <  SRR4302537.5651382/94‑1 (MQ=60)
                                          TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                                     <  SRR4302537.5870217/94‑1 (MQ=60)
                                          TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                                     <  SRR4302537.569974/94‑1 (MQ=60)
                                          TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                                     <  SRR4302537.812469/94‑1 (MQ=60)
                                          TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                                     >  SRR4302537.692806/1‑94 (MQ=60)
                                           TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGT                                                    >  SRR4302537.3213160/1‑94 (MQ=60)
                                           TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGT                                                    >  SRR4302537.1532046/1‑94 (MQ=60)
                                           TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGT                                                    >  SRR4302537.6457987/1‑94 (MQ=60)
                                           TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGCACATACTTCAAGGAACCTTTTGTGGGT                                                    <  SRR4302537.5405060/94‑1 (MQ=60)
                                              CATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAG                                                 <  SRR4302537.2553002/94‑1 (MQ=60)
                                              CATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAG                                                 <  SRR4302537.3764909/94‑1 (MQ=60)
                                               ATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGG                                                >  SRR4302537.280004/1‑94 (MQ=60)
                                                TAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGC                                               >  SRR4302537.4763048/1‑94 (MQ=60)
                                                 AACGAAGAATTGACCATTTTGTCCTGTTGCTCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCA                                              <  SRR4302537.329324/94‑1 (MQ=60)
                                                 AACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCA                                              <  SRR4302537.3310443/94‑1 (MQ=60)
                                                 AACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCA                                              >  SRR4302537.1778284/1‑94 (MQ=60)
                                                   CGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAC                                            >  SRR4302537.5021400/1‑94 (MQ=60)
                                                    GAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACC                                           >  SRR4302537.5201468/1‑94 (MQ=60)
                                                     AAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCA                                          <  SRR4302537.2628993/94‑1 (MQ=60)
                                                      AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                                         >  SRR4302537.6111013/1‑94 (MQ=60)
                                                      AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                                         >  SRR4302537.4795419/1‑94 (MQ=60)
                                                      AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                                         >  SRR4302537.6385454/1‑94 (MQ=60)
                                                      AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                                         <  SRR4302537.5404222/94‑1 (MQ=60)
                                                       GAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGT                                        <  SRR4302537.3211750/94‑1 (MQ=60)
                                                       GAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGT                                        >  SRR4302537.4560050/1‑94 (MQ=60)
                                                        AATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTA                                       <  SRR4302537.390844/94‑1 (MQ=60)
                                                        AATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTA                                       >  SRR4302537.3718346/1‑94 (MQ=60)
                                                        AATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTA                                       <  SRR4302537.675649/94‑1 (MQ=60)
                                                         ATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAT                                      >  SRR4302537.5960559/1‑94 (MQ=60)
                                                         ATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAT                                      <  SRR4302537.3550900/94‑1 (MQ=60)
                                                          TTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATG                                     <  SRR4302537.3328645/94‑1 (MQ=60)
                                                           TGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGC                                    >  SRR4302537.4550433/1‑94 (MQ=60)
                                                             ACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGA                                  >  SRR4302537.3776508/1‑94 (MQ=60)
                                                               CATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAA                                >  SRR4302537.2669495/1‑94 (MQ=60)
                                                                ATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAA                               <  SRR4302537.5902501/94‑1 (MQ=60)
                                                                ATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAA                               >  SRR4302537.300504/1‑94 (MQ=60)
                                                                 TTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAC                              >  SRR4302537.4487728/1‑94 (MQ=60)
                                                                 TTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAC                              <  SRR4302537.129066/94‑1 (MQ=60)
                                                                  TTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACG                             <  SRR4302537.5696415/94‑1 (MQ=60)
                                                                    TGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGAC                           >  SRR4302537.5914473/1‑94 (MQ=60)
                                                                     GTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACA                          <  SRR4302537.5249255/94‑1 (MQ=60)
                                                                      TCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACAC                         >  SRR4302537.3879784/1‑94 (MQ=60)
                                                                      TCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACAC                         >  SRR4302537.5068449/1‑94 (MQ=60)
                                                                       CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC                        <  SRR4302537.1400700/94‑1 (MQ=60)
                                                                       CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC                        <  SRR4302537.1654042/94‑1 (MQ=60)
                                                                       CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC                        >  SRR4302537.4520853/1‑94 (MQ=60)
                                                                       CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC                        <  SRR4302537.1919530/94‑1 (MQ=60)
                                                                        CTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCG                       >  SRR4302537.4632725/1‑94 (MQ=60)
                                                                        CTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCG                       >  SRR4302537.3231008/1‑94 (MQ=60)
                                                                         TGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGA                      >  SRR4302537.1234918/1‑94 (MQ=60)
                                                                          GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT                     >  SRR4302537.1312369/1‑94 (MQ=60)
                                                                          GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT                     <  SRR4302537.134008/94‑1 (MQ=60)
                                                                          GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT                     <  SRR4302537.1642762/94‑1 (MQ=60)
                                                                          GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT                     <  SRR4302537.4562542/94‑1 (MQ=60)
                                                                           TTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATT                    <  SRR4302537.1270328/94‑1 (MQ=60)
                                                                              CGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAA                 >  SRR4302537.6237621/1‑94 (MQ=60)
                                                                               GCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAAC                >  SRR4302537.4626692/1‑94 (MQ=60)
                                                                                 CTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAG              >  SRR4302537.2366828/1‑94 (MQ=60)
                                                                                 CTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAG              <  SRR4302537.4142653/94‑1 (MQ=60)
                                                                                  TTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGT             <  SRR4302537.430796/94‑1 (MQ=60)
                                                                                  TTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGT             <  SRR4302537.681853/94‑1 (MQ=60)
                                                                                  TTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGT             <  SRR4302537.1345377/94‑1 (MQ=60)
                                                                                   TAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTC            <  SRR4302537.5152117/94‑1 (MQ=60)
                                                                                   TAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTGAACAGTC            >  SRR4302537.3760744/1‑94 (MQ=60)
                                                                                     ATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGC          <  SRR4302537.1362612/94‑1 (MQ=60)
                                                                                     ATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGC          >  SRR4302537.3633997/1‑94 (MQ=60)
                                                                                       GTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCAT        >  SRR4302537.5439783/1‑94 (MQ=60)
                                                                                       GTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCAT        >  SRR4302537.2127662/1‑94 (MQ=60)
                                                                                       GTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCAT        <  SRR4302537.1849868/94‑1 (MQ=60)
                                                                                        TAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATG       <  SRR4302537.1520838/94‑1 (MQ=60)
                                                                                           GTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACC    <  SRR4302537.4074724/94‑1 (MQ=60)
                                                                                           GTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACC    <  SRR4302537.124689/94‑1 (MQ=60)
                                                                                            TGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCC   <  SRR4302537.4355939/94‑1 (MQ=60)
                                                                                            TGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCC   <  SRR4302537.5932676/94‑1 (MQ=60)
                                                                                            TGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCC   >  SRR4302537.796431/1‑94 (MQ=60)
                                                                                             GCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCG  <  SRR4302537.5624170/94‑1 (MQ=60)
                                                                                             GCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCG  >  SRR4302537.1581868/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCG  >  NC_000913/2627179‑2627365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑