Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,735,727 C→T intergenic (+61/‑38) pheL → / → pheA PheL/chorismate mutase‑P

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,735,7270CT100.0% 882.8 / NA 246intergenic (+61/‑38)pheL/pheAPheL/chorismate mutase‑P
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (122/124);  total (122/124)

Only 100 of 250 total aligned reads displayed.

TTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGG  >  NC_000913/2735637‑2735816
                                                                                          |                                                                                         
ttcttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTgg                                                                                         <  1:4402210/93‑1 (MQ=255)
ttcttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTgg                                                                                         <  1:2145489/93‑1 (MQ=255)
 tcttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTggg                                                                                        >  2:1497796/1‑93 (MQ=255)
 tcttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTggg                                                                                        >  1:170278/1‑93 (MQ=255)
 tcttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTggg                                                                                        <  2:4163434/93‑1 (MQ=255)
 tcttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTggg                                                                                        <  2:6411125/93‑1 (MQ=255)
  cttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTgggg                                                                                       >  1:2235822/1‑93 (MQ=255)
   ttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTggggg                                                                                      >  1:3022122/1‑93 (MQ=255)
    tcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTgggggg                                                                                     >  2:2564322/1‑93 (MQ=255)
      gCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGcc                                                                                   >  2:4684335/1‑93 (MQ=255)
       cATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCt                                                                                  >  2:5686922/1‑93 (MQ=255)
       cATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCt                                                                                  <  2:4836929/93‑1 (MQ=255)
        aTTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCtt                                                                                 >  1:162367/1‑93 (MQ=255)
         ttCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCttt                                                                                <  1:5107072/93‑1 (MQ=255)
         ttCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCttt                                                                                >  1:3544543/1‑93 (MQ=255)
         ttCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCttt                                                                                <  1:5465197/93‑1 (MQ=255)
          tCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACCGAATGTGAAGACGAACAATAAGGCCTCCCAAATTGGGGCGGCtttt                                                                               >  2:3039087/1‑93 (MQ=255)
          tCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCtttt                                                                               >  1:958293/1‑93 (MQ=255)
          tCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCtttt                                                                               >  1:5113623/1‑93 (MQ=255)
          tCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCtttt                                                                               <  1:2509046/93‑1 (MQ=255)
          tCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCtttt                                                                               >  2:6215128/1‑93 (MQ=255)
          tCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCtttt                                                                               <  2:6434603/93‑1 (MQ=255)
              ttttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTAt                                                                           <  2:5375000/93‑1 (MQ=255)
              ttttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTAt                                                                           <  2:2390872/93‑1 (MQ=255)
              ttttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTAt                                                                           <  1:5284523/93‑1 (MQ=255)
              ttttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTAt                                                                           <  2:620202/93‑1 (MQ=255)
              ttttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTAt                                                                           >  1:5604493/1‑93 (MQ=255)
                ttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTg                                                                         >  2:1656242/1‑93 (MQ=255)
                  aCCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGAt                                                                       >  1:1002099/1‑93 (MQ=255)
                  aCCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGAt                                                                       <  1:1387903/93‑1 (MQ=255)
                   ccTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCACATTGGGGGGCCTTTTTTATTGATa                                                                      >  1:69218/1‑93 (MQ=255)
                     ttCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAAc                                                                    >  1:6336439/1‑93 (MQ=255)
                      tCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACa                                                                   >  2:6120612/1‑93 (MQ=255)
                      tCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACa                                                                   <  1:6063910/93‑1 (MQ=255)
                          cTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACaaaaa                                                               <  1:5899305/93‑1 (MQ=255)
                           tGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAg                                                              >  1:3678823/1‑93 (MQ=255)
                            gAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAgg                                                             <  2:3759971/93‑1 (MQ=255)
                            gAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAgg                                                             >  2:5171195/1‑93 (MQ=255)
                             aaTGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACTAACAATAAGGCCTCCCAAATTGGGTGGCCTTTTTTATTGATAACAAAAAgga                                                            >  2:1318700/1‑92 (MQ=255)
                              aTGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCa                                                           >  1:4681908/1‑93 (MQ=255)
                              aTGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCa                                                           <  2:3898089/93‑1 (MQ=255)
                               tGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCaa                                                          >  2:4944983/1‑93 (MQ=255)
                                gggAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAac                                                         <  1:105284/93‑1 (MQ=255)
                                 ggAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAaca                                                        >  1:290342/1‑93 (MQ=255)
                                 ggAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAaca                                                        >  1:5993538/1‑93 (MQ=255)
                                  gAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCTCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAacac                                                       <  1:3463281/93‑1 (MQ=255)
                                    ggCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTa                                                     <  2:1803929/93‑1 (MQ=255)
                                     gCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTAt                                                    <  1:6405580/93‑1 (MQ=255)
                                     gCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTAt                                                    <  2:101138/93‑1 (MQ=255)
                                        tttCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCTTTTTTTTTTATTAAAAAAAAGGAAAAACTATGaa                                                 >  2:3540171/1‑92 (MQ=255)
                                          tcgtcgTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACAt                                               <  2:3712102/93‑1 (MQ=255)
                                            gtcgtGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCg                                             >  2:2693373/1‑93 (MQ=255)
                                            gtcgtGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCg                                             >  2:2736056/1‑93 (MQ=255)
                                             tcgtGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCgg                                            >  2:2021956/1‑93 (MQ=255)
                                               gtgtGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGaa                                          >  1:4443960/1‑93 (MQ=255)
                                                tgtgAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGaaa                                         >  1:4588638/1‑93 (MQ=255)
                                                 gtgAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGaaaa                                        <  2:735154/93‑1 (MQ=255)
                                                 gtgAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGaaaa                                        >  2:4208522/1‑93 (MQ=255)
                                                 gtgAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGaaaa                                        >  2:5819270/1‑93 (MQ=255)
                                                  tgAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAAc                                       >  2:1212819/1‑93 (MQ=255)
                                                  tgAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAAc                                       >  2:311757/1‑93 (MQ=255)
                                                   gAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAAcc                                      >  2:2436504/1‑93 (MQ=255)
                                                    aaaCAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAAccc                                     <  1:1773810/93‑1 (MQ=255)
                                                      aCAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGt                                   <  1:2096698/93‑1 (MQ=255)
                                                        aGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTa                                 <  2:884362/93‑1 (MQ=255)
                                                        aGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTa                                 <  1:575760/93‑1 (MQ=255)
                                                        aGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTa                                 <  1:4525996/93‑1 (MQ=255)
                                                         gAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTAc                                >  2:5431163/1‑93 (MQ=255)
                                                         gAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTAc                                <  2:2193756/93‑1 (MQ=255)
                                                          aaTGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACt                               <  1:3833698/93‑1 (MQ=255)
                                                           aTGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTg                              <  2:544682/93‑1 (MQ=255)
                                                               gAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGgcgc                          <  2:5356350/93‑1 (MQ=255)
                                                                aaGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCt                         >  1:5314914/1‑93 (MQ=255)
                                                                 aGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTg                        >  1:2005668/1‑93 (MQ=255)
                                                                    cGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCga                     <  1:4009315/93‑1 (MQ=255)
                                                                     gAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCgag                    <  2:3262718/93‑1 (MQ=255)
                                                                     gAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCgag                    <  1:779347/93‑1 (MQ=255)
                                                                      aaCAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCgaga                   >  2:5672378/1‑93 (MQ=255)
                                                                        cAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCgagaga                 <  1:227546/93‑1 (MQ=255)
                                                                        cAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCgagaga                 <  2:5312266/93‑1 (MQ=255)
                                                                          aTAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGaaa               >  1:3970250/1‑93 (MQ=255)
                                                                          aTAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGaaa               <  1:3702054/93‑1 (MQ=255)
                                                                            aaGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAAt             <  1:5410956/93‑1 (MQ=255)
                                                                             aGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATc            <  2:439167/93‑1 (MQ=255)
                                                                              ggCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCa           >  2:3230451/1‑93 (MQ=255)
                                                                              ggCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCa           <  1:3328496/93‑1 (MQ=255)
                                                                               gCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAg          <  1:3785454/93‑1 (MQ=255)
                                                                               gCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAg          >  1:492303/1‑93 (MQ=255)
                                                                               gCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAg          <  2:6056087/93‑1 (MQ=255)
                                                                                ccTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgc         <  2:4447344/93‑1 (MQ=255)
                                                                                 cTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcg        >  2:5761727/1‑93 (MQ=255)
                                                                                 cTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcg        <  1:5969263/93‑1 (MQ=255)
                                                                                 cTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcg        <  1:3145633/93‑1 (MQ=255)
                                                                                  tCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcgc       <  1:2717385/93‑1 (MQ=255)
                                                                                  tCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcgc       >  2:3921716/1‑93 (MQ=255)
                                                                                   cccAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcgcg      <  2:3661022/93‑1 (MQ=255)
                                                                                     cAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCt    >  1:2656307/1‑93 (MQ=255)
                                                                                     cAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCt    <  1:5573169/93‑1 (MQ=255)
                                                                                     cAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCt    <  1:6245555/93‑1 (MQ=255)
                                                                                      aaaTTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTg   >  2:4529013/1‑93 (MQ=255)
                                                                                          |                                                                                         
TTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGG  >  NC_000913/2735637‑2735816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGAT  >  NC_000913/2735634‑2735818
                                                                                             |                                                                                           
TTTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATT                                                                                             >  SRR4302537.2778651/1‑94 (MQ=60)
 TTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTG                                                                                            <  SRR4302537.4958033/94‑1 (MQ=60)
 TTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTG                                                                                            <  SRR4302537.4371039/94‑1 (MQ=60)
 TTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTG                                                                                            <  SRR4302537.2555373/94‑1 (MQ=60)
  TTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGG                                                                                           >  SRR4302537.1183647/1‑94 (MQ=60)
  TTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGG                                                                                           <  SRR4302537.785093/94‑1 (MQ=60)
   TTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGG                                                                                          <  SRR4302537.5866492/94‑1 (MQ=60)
   TTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGG                                                                                          >  SRR4302537.5500390/1‑94 (MQ=60)
   TTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGG                                                                                          >  SRR4302537.171492/1‑94 (MQ=60)
   TTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGG                                                                                          <  SRR4302537.2160587/94‑1 (MQ=60)
   TTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGG                                                                                          <  SRR4302537.4432588/94‑1 (MQ=60)
    TCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGG                                                                                         <  SRR4302537.6066490/94‑1 (MQ=60)
    TCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGG                                                                                         <  SRR4302537.3730961/94‑1 (MQ=60)
    TCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGG                                                                                         <  SRR4302537.918044/94‑1 (MQ=60)
    TCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGG                                                                                         >  SRR4302537.5222767/1‑94 (MQ=60)
    TCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGG                                                                                         >  SRR4302537.2251589/1‑94 (MQ=60)
     CTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGG                                                                                        >  SRR4302537.3043187/1‑94 (MQ=60)
     CTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGG                                                                                        >  SRR4302537.1001177/1‑94 (MQ=60)
      TTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGG                                                                                       <  SRR4302537.6164390/94‑1 (MQ=60)
        CGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCC                                                                                     <  SRR4302537.2592782/94‑1 (MQ=60)
         GCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCT                                                                                    >  SRR4302537.2120259/1‑94 (MQ=60)
         GCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCT                                                                                    >  SRR4302537.5348752/1‑94 (MQ=60)
          CATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTT                                                                                   >  SRR4302537.163523/1‑94 (MQ=60)
          CATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTT                                                                                   <  SRR4302537.3040037/94‑1 (MQ=60)
           ATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAGACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTT                                                                                  >  SRR4302537.3455558/1‑94 (MQ=60)
           ATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTT                                                                                  >  SRR4302537.4481859/1‑94 (MQ=60)
           ATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTT                                                                                  >  SRR4302537.1974676/1‑94 (MQ=60)
           ATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTT                                                                                  >  SRR4302537.3569581/1‑94 (MQ=60)
            TTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTT                                                                                 <  SRR4302537.5142264/94‑1 (MQ=60)
            TTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTT                                                                                 >  SRR4302537.4406585/1‑94 (MQ=60)
            TTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTT                                                                                 >  SRR4302537.5148868/1‑94 (MQ=60)
            TTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTT                                                                                 <  SRR4302537.5502473/94‑1 (MQ=60)
            TTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTT                                                                                 >  SRR4302537.964904/1‑94 (MQ=60)
            TTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTT                                                                                 >  SRR4302537.2140896/1‑94 (MQ=60)
             TCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACTAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTT                                                                                >  SRR4302537.4601054/1‑94 (MQ=60)
             TCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTT                                                                                <  SRR4302537.2526695/94‑1 (MQ=60)
              CTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTT                                                                               >  SRR4302537.5143792/1‑94 (MQ=60)
              CTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTT                                                                               <  SRR4302537.5973562/94‑1 (MQ=60)
               TTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTTGGGGGCCTTTTTTA                                                                              <  SRR4302537.3706919/94‑1 (MQ=60)
               TTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTA                                                                              <  SRR4302537.3839537/94‑1 (MQ=60)
                TTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTAT                                                                             >  SRR4302537.5642809/1‑94 (MQ=60)
                 TTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATT                                                                            <  SRR4302537.3702785/94‑1 (MQ=60)
                 TTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATT                                                                            <  SRR4302537.5320863/94‑1 (MQ=60)
                 TTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATT                                                                            <  SRR4302537.5312690/94‑1 (MQ=60)
                  TTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTG                                                                           >  SRR4302537.2190143/1‑94 (MQ=60)
                   TTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGA                                                                          <  SRR4302537.1552828/94‑1 (MQ=60)
                    TACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGAT                                                                         >  SRR4302537.1009013/1‑94 (MQ=60)
                     ACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCACATTGGGGGGCCTTTTTTATTGATA                                                                        >  SRR4302537.69725/1‑94 (MQ=60)
                     ACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATA                                                                        <  SRR4302537.1397578/94‑1 (MQ=60)
                     ACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATA                                                                        >  SRR4302537.957274/1‑94 (MQ=60)
                      CCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAA                                                                       >  SRR4302537.765179/1‑94 (MQ=60)
                      CCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAA                                                                       >  SRR4302537.4786114/1‑94 (MQ=60)
                       CTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAAC                                                                      >  SRR4302537.5417995/1‑94 (MQ=60)
                       CTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAAC                                                                      >  SRR4302537.6379752/1‑94 (MQ=60)
                         TCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAA                                                                    <  SRR4302537.2407822/94‑1 (MQ=60)
                         TCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAA                                                                    <  SRR4302537.6105574/94‑1 (MQ=60)
                          CCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAA                                                                   >  SRR4302537.5753299/1‑94 (MQ=60)
                           CCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAA                                                                  <  SRR4302537.2267238/94‑1 (MQ=60)
                             CTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAG                                                                >  SRR4302537.3704705/1‑94 (MQ=60)
                             CTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAG                                                                >  SRR4302537.4624526/1‑94 (MQ=60)
                             CTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAG                                                                <  SRR4302537.5939783/94‑1 (MQ=60)
                               GAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGC                                                              >  SRR4302537.4452679/1‑94 (MQ=60)
                                AATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCA                                                             >  SRR4302537.1668440/1‑94 (MQ=60)
                                AATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCA                                                             >  SRR4302537.4714297/1‑94 (MQ=60)
                                  TGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAAC                                                           >  SRR4302537.3503561/1‑94 (MQ=60)
                                  TGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAAC                                                           <  SRR4302537.6354621/94‑1 (MQ=60)
                                   GGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACA                                                          <  SRR4302537.106040/94‑1 (MQ=60)
                                   GGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACA                                                          >  SRR4302537.292361/1‑94 (MQ=60)
                                   GGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACA                                                          >  SRR4302537.6034703/1‑94 (MQ=60)
                                    GGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACAC                                                         <  SRR4302537.3889684/94‑1 (MQ=60)
                                     GAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCTCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACT                                                        <  SRR4302537.3487769/94‑1 (MQ=60)
                                       GGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTAT                                                      >  SRR4302537.1224838/1‑94 (MQ=60)
                                        GCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATG                                                     <  SRR4302537.6449180/94‑1 (MQ=60)
                                          GTTTCTTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGAC                                                   >  SRR4302537.5368010/1‑94 (MQ=60)
                                             TCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATC                                                >  SRR4302537.5058847/1‑94 (MQ=60)
                                                 CGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAA                                            <  SRR4302537.209228/94‑1 (MQ=60)
                                                 CGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAA                                            >  SRR4302537.4474651/1‑94 (MQ=60)
                                                  GTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAA                                           >  SRR4302537.4620370/1‑94 (MQ=60)
                                                    GTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAAC                                         >  SRR4302537.6296306/1‑94 (MQ=60)
                                                     TGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACC                                        <  SRR4302537.4001568/94‑1 (MQ=60)
                                                       AAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCG                                      <  SRR4302537.1786163/94‑1 (MQ=60)
                                                       AAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCG                                      >  SRR4302537.4088304/1‑94 (MQ=60)
                                                        AACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGT                                     >  SRR4302537.3396034/1‑94 (MQ=60)
                                                         ACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTT                                    <  SRR4302537.2111484/94‑1 (MQ=60)
                                                          CAGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTA                                   <  SRR4302537.3892472/94‑1 (MQ=60)
                                                           AGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTAC                                  <  SRR4302537.579706/94‑1 (MQ=60)
                                                           AGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTAC                                  <  SRR4302537.4557311/94‑1 (MQ=60)
                                                           AGAATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTAC                                  >  SRR4302537.6016438/1‑94 (MQ=60)
                                                             AATGCGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTG                                <  SRR4302537.3860569/94‑1 (MQ=60)
                                                                 CGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGC                            >  SRR4302537.2283857/1‑94 (MQ=60)
                                                                 CGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGC                            >  SRR4302537.5076358/1‑94 (MQ=60)
                                                                 CGAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGC                            >  SRR4302537.5628528/1‑94 (MQ=60)
                                                                  GAAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCT                           >  SRR4302537.5351412/1‑94 (MQ=60)
                                                                   AAGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTG                          >  SRR4302537.2019636/1‑94 (MQ=60)
                                                                    AGACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGC                         >  SRR4302537.3652728/1‑94 (MQ=60)
                                                                     GACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCG                        >  SRR4302537.6470546/1‑94 (MQ=60)
                                                                     GACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCG                        <  SRR4302537.3058901/94‑1 (MQ=60)
                                                                      ACGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGA                       >  SRR4302537.176848/1‑94 (MQ=60)
                                                                       CGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAG                      <  SRR4302537.4709096/94‑1 (MQ=60)
                                                                       CGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAG                      <  SRR4302537.6083485/94‑1 (MQ=60)
                                                                       CGAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAG                      <  SRR4302537.4037381/94‑1 (MQ=60)
                                                                        GAACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGA                     <  SRR4302537.784696/94‑1 (MQ=60)
                                                                         AACAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAG                    <  SRR4302537.2861786/94‑1 (MQ=60)
                                                                           CAATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAA                  <  SRR4302537.229159/94‑1 (MQ=60)
                                                                            AATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAA                 >  SRR4302537.5552959/1‑94 (MQ=60)
                                                                            AATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAA                 >  SRR4302537.3998035/1‑94 (MQ=60)
                                                                            AATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAA                 >  SRR4302537.1797625/1‑94 (MQ=60)
                                                                             ATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAA                <  SRR4302537.3190200/94‑1 (MQ=60)
                                                                             ATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAA                <  SRR4302537.3728095/94‑1 (MQ=60)
                                                                             ATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAA                <  SRR4302537.6520613/94‑1 (MQ=60)
                                                                             ATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAA                >  SRR4302537.5521050/1‑94 (MQ=60)
                                                                             ATAAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAA                >  SRR4302537.2654143/1‑94 (MQ=60)
                                                                               AAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATC              <  SRR4302537.5447855/94‑1 (MQ=60)
                                                                               AAGGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATC              >  SRR4302537.1050998/1‑94 (MQ=60)
                                                                                 GGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAG            <  SRR4302537.454576/94‑1 (MQ=60)
                                                                                 GGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAG            >  SRR4302537.495692/1‑94 (MQ=60)
                                                                                 GGCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAG            <  SRR4302537.3352049/94‑1 (MQ=60)
                                                                                  GCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGC           <  SRR4302537.568672/94‑1 (MQ=60)
                                                                                  GCCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGC           <  SRR4302537.3812032/94‑1 (MQ=60)
                                                                                   CCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCG          <  SRR4302537.5968581/94‑1 (MQ=60)
                                                                                   CCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCG          <  SRR4302537.3123673/94‑1 (MQ=60)
                                                                                   CCTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCG          >  SRR4302537.1637088/1‑94 (MQ=60)
                                                                                    CTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGC         <  SRR4302537.3167705/94‑1 (MQ=60)
                                                                                    CTCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGC         <  SRR4302537.6010235/94‑1 (MQ=60)
                                                                                     TCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCG        <  SRR4302537.2736362/94‑1 (MQ=60)
                                                                                     TCCCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCG        >  SRR4302537.2682140/1‑94 (MQ=60)
                                                                                       CCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCT      <  SRR4302537.2767413/94‑1 (MQ=60)
                                                                                       CCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCT      >  SRR4302537.2674873/1‑94 (MQ=60)
                                                                                       CCAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCT      >  SRR4302537.6405448/1‑94 (MQ=60)
                                                                                        CAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTG     <  SRR4302537.5611263/94‑1 (MQ=60)
                                                                                        CAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTG     <  SRR4302537.3778445/94‑1 (MQ=60)
                                                                                        CAAATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTG     <  SRR4302537.6288474/94‑1 (MQ=60)
                                                                                           ATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGAT  >  SRR4302537.498504/1‑94 (MQ=60)
                                                                                           ATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGAT  <  SRR4302537.4361334/94‑1 (MQ=60)
                                                                                           ATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGAT  <  SRR4302537.47200/94‑1 (MQ=60)
                                                                                           ATTGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGAT  <  SRR4302537.5997799/94‑1 (MQ=60)
                                                                                             |                                                                                           
TTTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGAT  >  NC_000913/2735634‑2735818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑