Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,781,027 C→G intergenic (‑151/+58) ypjA ← / ← b2648 putative ATP‑binding component of a transport system/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,781,0270CG100.0% 904.6 / NA 273intergenic (‑151/+58)ypjA/b2648putative ATP‑binding component of a transport system/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (116/157);  total (116/157)

Only 100 of 277 total aligned reads displayed.

AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑G‑CCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT  >  NC_000913/2780938‑2781116
                                                                                           |                                                                                         
aaCGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCa                                                                                         >  2:5426527/1‑93 (MQ=255)
aaCGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCa                                                                                         >  2:5354599/1‑93 (MQ=255)
  cGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaa                                                                                       >  2:887114/1‑93 (MQ=255)
   gCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATCCGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaa                                                                                      <  1:3469382/93‑1 (MQ=25)
   gCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaa                                                                                      >  1:740065/1‑93 (MQ=255)
    cAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaat                                                                                     <  2:4480118/93‑1 (MQ=25)
     aGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaata                                                                                    >  2:2872906/1‑93 (MQ=255)
      gTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaataa                                                                                   >  2:5664792/1‑93 (MQ=255)
      gTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaataa                                                                                   >  2:2663409/1‑93 (MQ=255)
      gTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaataa                                                                                   >  1:2627018/1‑93 (MQ=255)
      gTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaataa                                                                                   >  1:101655/1‑93 (MQ=255)
       tGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaataaa                                                                                  <  1:1178465/93‑1 (MQ=255)
       tGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCaaaataaa                                                                                  <  2:1154618/93‑1 (MQ=25)
           cTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGa                                                                              >  1:1335833/1‑93 (MQ=255)
           cTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGa                                                                              <  1:6292957/93‑1 (MQ=25)
            tGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGAt                                                                             >  2:1520278/1‑93 (MQ=255)
            tGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGAt                                                                             <  1:2171181/93‑1 (MQ=255)
             gAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGAtt                                                                            >  2:3441336/1‑93 (MQ=255)
             gAAGTGTGGTTGCATAAAAAACTCAATCCATGCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCCTTGGCAAAATTAAATGAtt                                                                            <  2:6322608/93‑1 (MQ=25)
                 tgtgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACa                                                                        >  2:594723/1‑93 (MQ=255)
                  gtgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACAt                                                                       <  2:2793752/93‑1 (MQ=37)
                   tgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATa                                                                      >  2:5823675/1‑93 (MQ=255)
                    ggTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATaa                                                                     <  1:6173199/93‑1 (MQ=255)
                    ggTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATaa                                                                     <  1:3115036/93‑1 (MQ=37)
                    ggTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATaa                                                                     <  2:238228/93‑1 (MQ=255)
                     gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAAt                                                                    >  1:2418424/1‑93 (MQ=255)
                      ttGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATc                                                                   >  2:3581502/1‑93 (MQ=255)
                      ttGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATc                                                                   >  1:4983473/1‑93 (MQ=255)
                       tGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCg                                                                  <  2:5079851/93‑1 (MQ=37)
                         gATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGtt                                                                <  1:5364600/93‑1 (MQ=255)
                           tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                              <  1:2745125/93‑1 (MQ=255)
                           tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                              <  1:3947411/93‑1 (MQ=255)
                            aaaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCt                                                             >  2:3492348/1‑93 (MQ=255)
                              aaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtga                                                           <  2:1987465/93‑1 (MQ=37)
                              aaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtga                                                           <  2:763484/93‑1 (MQ=255)
                              aaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtga                                                           <  2:3863353/93‑1 (MQ=255)
                               aaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgat                                                          >  2:1704095/1‑93 (MQ=255)
                               aaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgat                                                          <  1:2997478/93‑1 (MQ=255)
                               aaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgat                                                          <  2:4957107/93‑1 (MQ=255)
                               aaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgat                                                          <  2:2881739/93‑1 (MQ=255)
                                aaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatg                                                         <  2:3165877/93‑1 (MQ=255)
                                aaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatg                                                         >  1:5873964/1‑93 (MQ=255)
                                 aGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatga                                                        >  2:4726078/1‑93 (MQ=255)
                                   tCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAat                                                      <  1:4685849/93‑1 (MQ=255)
                                    taaTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAata                                                     <  1:553956/92‑1 (MQ=25)
                                      aTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAatatt                                                   >  1:1235659/1‑92 (MQ=25)
                                      aTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtc                                                   <  1:1682382/93‑1 (MQ=25)
                                        ccATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtctt                                                 <  2:4200401/93‑1 (MQ=255)
                                        ccATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtctt                                                 <  2:1825208/93‑1 (MQ=255)
                                         cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                                <  1:484082/93‑1 (MQ=255)
                                          aTTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttct                                               <  1:1525561/93‑1 (MQ=255)
                                           ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTg                                              <  1:5640632/93‑1 (MQ=255)
                                            tCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGc                                             >  1:3125929/1‑93 (MQ=255)
                                             cAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCt                                            <  1:2049093/93‑1 (MQ=21)
                                              aGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTc                                           >  1:1995297/1‑93 (MQ=255)
                                              aGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTc                                           >  2:4805426/1‑93 (MQ=255)
                                                     aCGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaa                                    <  1:3073722/93‑1 (MQ=18)
                                                       gggCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaaaa                                  >  1:3085435/1‑93 (MQ=255)
                                                         gCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATc                                <  2:4648346/93‑1 (MQ=18)
                                                           gTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGATTATCTTCTGCTCACATAAAAATcac                              <  1:4009330/93‑1 (MQ=17)
                                                           gTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcac                              >  2:1594817/1‑93 (MQ=18)
                                                            tATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcaca                             <  1:4805244/93‑1 (MQ=255)
                                                            tATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcaca                             <  1:394232/93‑1 (MQ=255)
                                                            tATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcaca                             <  1:2868939/93‑1 (MQ=17)
                                                              ttcttttcttTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcacaca                           <  2:4568969/93‑1 (MQ=255)
                                                              ttcttttcttTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcacaca                           >  2:5086478/1‑93 (MQ=17)
                                                               tcttttctttCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACaa                          <  2:6017161/93‑1 (MQ=255)
                                                               tcttttctttCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACaa                          <  2:6463058/93‑1 (MQ=255)
                                                                cttttctttCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAt                         <  1:1453564/93‑1 (MQ=255)
                                                                 ttttctttCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATa                        >  2:1083660/1‑93 (MQ=255)
                                                                  tttctttcGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATaa                       <  2:611272/93‑1 (MQ=17)
                                                                    tctttcGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACt                     >  2:4040627/1‑93 (MQ=17)
                                                                     ttttcGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACtt                    <  1:6045675/92‑1 (MQ=17)
                                                                      tttcGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACttt                   >  1:6207884/1‑93 (MQ=17)
                                                                       ttcGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTg                  <  2:2067180/93‑1 (MQ=255)
                                                                       ttcGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTg                  >  1:3684996/1‑93 (MQ=17)
                                                                        tcGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTga                 <  2:4797281/93‑1 (MQ=255)
                                                                        tcGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTga                 <  2:5286688/93‑1 (MQ=255)
                                                                          gACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTgaga               <  1:3875225/93‑1 (MQ=255)
                                                                          gACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTgaga               <  1:3387114/93‑1 (MQ=255)
                                                                           aCAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAt              <  2:710615/93‑1 (MQ=255)
                                                                           aCAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAt              >  1:4201386/1‑93 (MQ=18)
                                                                           aCAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAt              >  1:3594616/1‑93 (MQ=18)
                                                                            cAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATc             <  2:2318645/93‑1 (MQ=255)
                                                                               tgagg‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCa          >  1:4256870/5‑93 (MQ=255)
                                                                                gagg‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAg         >  1:5231670/4‑93 (MQ=255)
                                                                                gagg‑CCGTTGACAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTTCTCACATAAAAATCACACAATAACTTTGAGATCGCAg         <  2:1003596/90‑1 (MQ=255)
                                                                                 agg‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGa        >  2:936981/3‑93 (MQ=255)
                                                                                   g‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAtt      <  1:5922837/93‑1 (MQ=255)
                                                                                   g‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAtt      <  1:4648732/93‑1 (MQ=255)
                                                                                      cGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGt    >  2:1056081/1‑93 (MQ=255)
                                                                                      cGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGt    <  1:831990/93‑1 (MQ=255)
                                                                                      cGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGt    >  1:5041689/1‑93 (MQ=255)
                                                                                       gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt   >  1:4410792/1‑93 (MQ=255)
                                                                                       gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTAACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt   <  2:1760123/93‑1 (MQ=255)
                                                                                       gTTGGCAAAATAAAAAGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt   >  1:5105873/1‑93 (MQ=255)
                                                                                        ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  >  2:4834320/1‑93 (MQ=255)
                                                                                        ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  <  2:5902034/93‑1 (MQ=255)
                                                                                        ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  >  1:3209969/1‑93 (MQ=255)
                                                                                        ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  >  1:2777825/1‑93 (MQ=255)
                                                                                           |                                                                                         
AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑G‑CCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT  >  NC_000913/2780938‑2781116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTAC  >  NC_000913/2780938‑2781119
                                                                                          |                                                                                            
AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAA                                                                                           <  SRR4302537.6249439/94‑1 (MQ=60)
  CGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAA                                                                                         >  SRR4302537.745115/1‑94 (MQ=60)
   GCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATCCGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAAT                                                                                        <  SRR4302537.3493925/94‑1 (MQ=60)
   GCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAAT                                                                                        <  SRR4302537.3973035/94‑1 (MQ=60)
   GCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAAT                                                                                        <  SRR4302537.366633/94‑1 (MQ=60)
   GCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAAT                                                                                        >  SRR4302537.3705588/1‑94 (MQ=60)
    CAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATA                                                                                       <  SRR4302537.5202469/94‑1 (MQ=60)
    CAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATA                                                                                       >  SRR4302537.5259718/1‑94 (MQ=60)
     AGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAA                                                                                      >  SRR4302537.2771270/1‑94 (MQ=60)
     AGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAA                                                                                      >  SRR4302537.2645421/1‑94 (MQ=60)
     AGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAA                                                                                      >  SRR4302537.102385/1‑94 (MQ=60)
       TGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAA                                                                                    <  SRR4302537.1186658/94‑1 (MQ=60)
        GCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAAT                                                                                   <  SRR4302537.1207497/94‑1 (MQ=60)
        GCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAAT                                                                                   >  SRR4302537.1916794/1‑94 (MQ=60)
         CGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATG                                                                                  <  SRR4302537.2042488/94‑1 (MQ=60)
          GCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGA                                                                                 >  SRR4302537.1345136/1‑94 (MQ=60)
          GCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGA                                                                                 >  SRR4302537.2644076/1‑94 (MQ=60)
           GTGAAGTGGGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAT                                                                                <  SRR4302537.3096212/94‑1 (MQ=60)
           CTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAT                                                                                >  SRR4302537.808492/1‑94 (MQ=60)
           CTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAT                                                                                <  SRR4302537.6336075/94‑1 (MQ=60)
            TGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATT                                                                               <  SRR4302537.5085446/94‑1 (MQ=60)
            TGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATT                                                                               <  SRR4302537.2186481/94‑1 (MQ=60)
            TGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATT                                                                               >  SRR4302537.642746/1‑94 (MQ=60)
            TGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACAGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATT                                                                               >  SRR4302537.3493239/1‑94 (MQ=60)
             gaattgggtTTGGATAAAAAATTCAATCCATTCAGGAAATACTGGTTTATTCTTTTCTTTCGTCATTGAGGCCGTTGGCAAAATAAAATGATTA                                                                              >  SRR4302537.6519478/10‑94 (MQ=39)
              AAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTA                                                                             >  SRR4302537.4730203/1‑94 (MQ=60)
                GTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACA                                                                           >  SRR4302537.2231060/1‑94 (MQ=60)
                 TGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACAT                                                                          >  SRR4302537.13405/1‑94 (MQ=60)
                 TGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACAT                                                                          <  SRR4302537.2686707/94‑1 (MQ=60)
                  GTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATA                                                                         <  SRR4302537.5121858/94‑1 (MQ=60)
                   TGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAA                                                                        >  SRR4302537.1462798/1‑94 (MQ=60)
                    GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAT                                                                       <  SRR4302537.5999478/94‑1 (MQ=60)
                    GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAT                                                                       <  SRR4302537.3136792/94‑1 (MQ=60)
                    GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAT                                                                       <  SRR4302537.3947255/94‑1 (MQ=60)
                    GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAT                                                                       <  SRR4302537.6250106/94‑1 (MQ=60)
                    GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAT                                                                       >  SRR4302537.2435467/1‑94 (MQ=60)
                    GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAT                                                                       >  SRR4302537.4264544/1‑94 (MQ=60)
                    GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAT                                                                       <  SRR4302537.6215712/94‑1 (MQ=60)
                     GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATC                                                                      <  SRR4302537.4096017/94‑1 (MQ=60)
                     GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATC                                                                      >  SRR4302537.5017822/1‑94 (MQ=60)
                     GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCATTGGCAAAATAAAATGATTTACATAATC                                                                      <  SRR4302537.4207285/94‑1 (MQ=60)
                      TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCG                                                                     <  SRR4302537.1181365/94‑1 (MQ=60)
                      TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCG                                                                     >  SRR4302537.1342711/1‑94 (MQ=60)
                      TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCG                                                                     <  SRR4302537.1927111/94‑1 (MQ=60)
                       TGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGT                                                                    >  SRR4302537.3199083/1‑94 (MQ=60)
                        GGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTT                                                                   <  SRR4302537.6209126/94‑1 (MQ=60)
                         GATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTT                                                                  <  SRR4302537.5401316/94‑1 (MQ=60)
                         GATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTT                                                                  <  SRR4302537.3559502/94‑1 (MQ=60)
                          ATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTC                                                                 <  SRR4302537.3036937/94‑1 (MQ=60)
                           TAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCT                                                                >  SRR4302537.4717545/1‑94 (MQ=60)
                           TAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCT                                                                <  SRR4302537.3975020/94‑1 (MQ=60)
                           TAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCT                                                                <  SRR4302537.2764274/94‑1 (MQ=60)
                              AAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGAT                                                             <  SRR4302537.5579382/94‑1 (MQ=60)
                               AAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATG                                                            <  SRR4302537.3018375/94‑1 (MQ=60)
                               AAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATG                                                            <  SRR4302537.990985/94‑1 (MQ=60)
                               AAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATG                                                            >  SRR4302537.5914259/1‑94 (MQ=60)
                               AAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATG                                                            >  SRR4302537.279612/1‑94 (MQ=60)
                                  GTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAAT                                                         <  SRR4302537.1536917/94‑1 (MQ=60)
                                   TCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATA                                                        <  SRR4302537.4718261/94‑1 (MQ=60)
                                    TAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAT                                                       <  SRR4302537.557769/94‑1 (MQ=60)
                                    CAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAT                                                       <  SRR4302537.3947671/94‑1 (MQ=60)
                                     AATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATT                                                      >  SRR4302537.1244248/1‑94 (MQ=60)
                                      ATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCT                                                     >  SRR4302537.1652788/1‑94 (MQ=60)
                                      ATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCT                                                     <  SRR4302537.2357974/94‑1 (MQ=60)
                                      ATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCT                                                     <  SRR4302537.1694157/94‑1 (MQ=60)
                                       TCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTT                                                    <  SRR4302537.6281251/94‑1 (MQ=60)
                                        CCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTC                                                   >  SRR4302537.2845953/1‑94 (MQ=60)
                                         CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                  <  SRR4302537.487400/94‑1 (MQ=60)
                                         CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                  <  SRR4302537.4407517/94‑1 (MQ=60)
                                         CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                  <  SRR4302537.5376541/94‑1 (MQ=60)
                                          ATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTG                                                 <  SRR4302537.1536215/94‑1 (MQ=60)
                                           TTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGC                                                >  SRR4302537.3147828/1‑94 (MQ=60)
                                           TTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGC                                                <  SRR4302537.5679234/94‑1 (MQ=60)
                                           TTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGC                                                >  SRR4302537.3985156/1‑94 (MQ=60)
                                           TTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGC                                                <  SRR4302537.5055840/94‑1 (MQ=60)
                                            TCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCT                                               <  SRR4302537.2156177/94‑1 (MQ=60)
                                             CAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTC                                              >  SRR4302537.2009169/1‑94 (MQ=60)
                                             CAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTC                                              <  SRR4302537.2063463/94‑1 (MQ=60)
                                               GGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCAC                                            <  SRR4302537.3101461/94‑1 (MQ=60)
                                               GGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCAC                                            <  SRR4302537.3119210/94‑1 (MQ=60)
                                                 AAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACAT                                          <  SRR4302537.4941786/94‑1 (MQ=60)
                                                  AATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATA                                         >  SRR4302537.4036310/1‑94 (MQ=60)
                                                   ATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAA                                        >  SRR4302537.4461781/1‑94 (MQ=60)
                                                    TACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAA                                       <  SRR4302537.6004557/94‑1 (MQ=60)
                                                     ACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAA                                      <  SRR4302537.3095137/94‑1 (MQ=60)
                                                      CGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAACA                                     >  SRR4302537.6461434/1‑94 (MQ=60)
                                                      CGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAA                                     >  SRR4302537.2927141/1‑94 (MQ=60)
                                                      CGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAA                                     <  SRR4302537.1244134/94‑1 (MQ=60)
                                                      CGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAA                                     >  SRR4302537.3106932/1‑94 (MQ=60)
                                                      CGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAA                                     >  SRR4302537.5034913/1‑94 (MQ=60)
                                                       GGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAAT                                    <  SRR4302537.4870654/94‑1 (MQ=60)
                                                          CGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCAC                                 >  SRR4302537.3147755/1‑94 (MQ=60)
                                                          CGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCAC                                 >  SRR4302537.352462/1‑94 (MQ=60)
                                                           GTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGATTATCTTCTGCTCACATAAAAATCACA                                <  SRR4302537.4037396/94‑1 (MQ=58)
                                                           GTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACA                                <  SRR4302537.4705351/94‑1 (MQ=60)
                                                           GTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACA                                >  SRR4302537.1461979/1‑94 (MQ=60)
                                                           GTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACA                                >  SRR4302537.3251802/1‑94 (MQ=60)
                                                            TATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACAC                               <  SRR4302537.2889076/94‑1 (MQ=59)
                                                            TATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACAC                               <  SRR4302537.396965/94‑1 (MQ=59)
                                                            TATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACAC                               <  SRR4302537.4838388/94‑1 (MQ=59)
                                                            TATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACAC                               >  SRR4302537.2719558/1‑94 (MQ=59)
                                                                CTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATA                           <  SRR4302537.3832703/94‑1 (MQ=49)
                                                                CTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATA                           <  SRR4302537.1463697/94‑1 (MQ=49)
                                                                CTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATA                           >  SRR4302537.3243315/1‑94 (MQ=49)
                                                                  TTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAC                         >  SRR4302537.4990255/1‑94 (MQ=47)
                                                                    TCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTT                       <  SRR4302537.5585680/94‑1 (MQ=47)
                                                                    TCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTT                       >  SRR4302537.6162888/1‑94 (MQ=47)
                                                                     TTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                      <  SRR4302537.6087195/94‑1 (MQ=49)
                                                                     CTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                      >  SRR4302537.6250656/1‑94 (MQ=49)
                                                                      TTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTG                     <  SRR4302537.4271970/94‑1 (MQ=52)
                                                                      TTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTG                     <  SRR4302537.304648/94‑1 (MQ=52)
                                                                      TTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTG                     >  SRR4302537.3710913/1‑94 (MQ=52)
                                                                         CGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGA                  >  SRR4302537.2469624/1‑94 (MQ=59)
                                                                          GACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                 >  SRR4302537.3619955/1‑94 (MQ=60)
                                                                          GACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                 <  SRR4302537.3902332/94‑1 (MQ=60)
                                                                          GACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                 <  SRR4302537.3411109/94‑1 (MQ=60)
                                                                          GACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                 >  SRR4302537.4230717/1‑94 (MQ=60)
                                                                          GACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGCTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                 >  SRR4302537.818757/1‑94 (MQ=58)
                                                                          GACAATGAGGCCGTTGGCAAAATAAAATGATTTACAAAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                 >  SRR4302537.2956206/1‑94 (MQ=58)
                                                                           ACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATC                <  SRR4302537.2044618/94‑1 (MQ=60)
                                                                           ACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATC                <  SRR4302537.5809912/94‑1 (MQ=60)
                                                                             AATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGC              >  SRR4302537.363729/1‑94 (MQ=60)
                                                                             AATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGC              >  SRR4302537.1617630/1‑94 (MQ=60)
                                                                              ATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCA             >  SRR4302537.4286457/1‑94 (MQ=60)
                                                                              ATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCA             <  SRR4302537.841832/94‑1 (MQ=60)
                                                                              ATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCA             >  SRR4302537.5411164/1‑94 (MQ=60)
                                                                               TGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAG            >  SRR4302537.5267652/1‑94 (MQ=60)
                                                                                gagGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGA           >  SRR4302537.374012/4‑94 (MQ=60)
                                                                                 agGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT          <  SRR4302537.3140207/92‑1 (MQ=60)
                                                                                 agGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT          >  SRR4302537.5851763/3‑94 (MQ=60)
                                                                                 agGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT          <  SRR4302537.1479693/92‑1 (MQ=60)
                                                                                 agGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT          >  SRR4302537.4729893/3‑94 (MQ=60)
                                                                                   GCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTG        <  SRR4302537.5963476/94‑1 (MQ=60)
                                                                                   GCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTG        <  SRR4302537.5411883/94‑1 (MQ=60)
                                                                                   GCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTG        <  SRR4302537.4680871/94‑1 (MQ=60)
                                                                                    CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGT       >  SRR4302537.5076400/1‑94 (MQ=60)
                                                                                     CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT      >  SRR4302537.5949374/1‑94 (MQ=60)
                                                                                     CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT      <  SRR4302537.837680/94‑1 (MQ=60)
                                                                                     CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT      >  SRR4302537.4441227/1‑94 (MQ=60)
                                                                                     CGTTGGCAAAATAAAAAGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT      >  SRR4302537.5141058/1‑94 (MQ=60)
                                                                                      GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT     <  SRR4302537.3166452/94‑1 (MQ=60)
                                                                                      GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT     >  SRR4302537.2797248/1‑94 (MQ=60)
                                                                                      GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT     <  SRR4302537.899951/94‑1 (MQ=60)
                                                                                      GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT     >  SRR4302537.3232538/1‑94 (MQ=60)
                                                                                      GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATACCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT     <  SRR4302537.4504402/94‑1 (MQ=60)
                                                                                        TGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTA   <  SRR4302537.1620412/94‑1 (MQ=60)
                                                                                        TGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTA   <  SRR4302537.3694419/94‑1 (MQ=60)
                                                                                         GGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTAC  <  SRR4302537.6113672/94‑1 (MQ=60)
                                                                                          |                                                                                            
AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTAC  >  NC_000913/2780938‑2781119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑