Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,812,859 Δ1 bp intergenic (‑105/+46) ygaG ← / ← gshA hypothetical protein/gamma‑glutamate‑cysteine ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,812,8580C.100.0% 1166.3 / NA 246intergenic (‑104/+47)ygaG/gshAhypothetical protein/gamma‑glutamate‑cysteine ligase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (147/99);  total (147/99)

Only 100 of 261 total aligned reads displayed.

CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATC  >  NC_000913/2812766‑2812946
                                                                                            |                                                                                        
cGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTc                                                                                          >  1:2652870/1‑93 (MQ=255)
cGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTc                                                                                          >  1:1511473/1‑93 (MQ=255)
cGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTc                                                                                          >  1:2085361/1‑93 (MQ=255)
 ggTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTca                                                                                         >  1:6093435/1‑92 (MQ=255)
   tAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTcaga                                                                                       <  2:5036403/93‑4 (MQ=255)
    aaTTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTcagag                                                                                      >  1:4735958/1‑89 (MQ=255)
      tttttttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAt                                                                                   <  1:5761181/93‑1 (MQ=255)
       ttttttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATg                                                                                  <  1:5237337/93‑1 (MQ=255)
          tttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGaaa                                                                               >  1:2588205/1‑93 (MQ=255)
          tttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGaaa                                                                               >  2:3348963/1‑93 (MQ=255)
           ttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAt                                                                              <  1:5571310/93‑1 (MQ=255)
           ttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAt                                                                              <  1:3829844/93‑1 (MQ=255)
            tAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGGTGAAAtt                                                                             >  2:1307925/1‑93 (MQ=255)
            tAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAtt                                                                             >  2:458176/1‑93 (MQ=255)
            tAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAtt                                                                             <  1:1592027/93‑1 (MQ=255)
             aaaaaTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAttt                                                                            <  1:510590/93‑1 (MQ=255)
              aaaaTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAtttt                                                                           >  2:3006790/1‑93 (MQ=255)
              aaaaTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAtttt                                                                           >  1:3511274/1‑93 (MQ=255)
              aaaaTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAtttt                                                                           >  2:3461398/1‑93 (MQ=255)
                aaTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCTCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTgg                                                                         <  2:506260/93‑1 (MQ=255)
                aaTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTgg                                                                         <  2:6334301/93‑1 (MQ=255)
                 aTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGc                                                                        >  2:607301/1‑93 (MQ=255)
                 aTTTTCTAAACTCTTTCTCCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCACCCCTGAATT‑CAGAGATGAAATTTGGGc                                                                        <  2:1348394/93‑1 (MQ=255)
                    ttCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAc                                                                     >  1:1438200/1‑93 (MQ=255)
                     tCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACt                                                                    >  1:3400217/1‑93 (MQ=255)
                     tCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACt                                                                    <  2:3599417/93‑1 (MQ=255)
                       tGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCa                                                                  <  2:3049843/93‑1 (MQ=255)
                         aaCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACg                                                                >  2:5928143/1‑93 (MQ=255)
                         aaCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACg                                                                >  2:4441937/1‑93 (MQ=255)
                          aCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGa                                                               >  1:1721663/1‑93 (MQ=255)
                          aCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGa                                                               >  2:4936253/1‑93 (MQ=255)
                          aCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGa                                                               >  1:3336613/1‑93 (MQ=255)
                          aCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGa                                                               <  1:1615682/93‑1 (MQ=255)
                           ctctTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAg                                                              <  1:84912/93‑1 (MQ=255)
                            tctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAgg                                                             >  2:2983516/1‑92 (MQ=255)
                            tctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGt                                                             >  1:999789/1‑93 (MQ=255)
                             ctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTg                                                            <  2:3762550/93‑1 (MQ=255)
                              tttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTgg                                                           <  2:4359766/93‑1 (MQ=255)
                              tttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTgg                                                           >  2:2646485/1‑93 (MQ=255)
                                tcttcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGcc                                                         <  2:1490612/93‑1 (MQ=255)
                                   tcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttt                                                      <  2:2065443/93‑1 (MQ=255)
                                     ccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCCTCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttttt                                                    >  1:456321/1‑93 (MQ=255)
                                     ccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttttt                                                    <  2:5258466/93‑1 (MQ=255)
                                     ccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttttt                                                    >  1:2331935/1‑93 (MQ=255)
                                      cAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttc                                                   >  2:1879228/1‑93 (MQ=255)
                                      cAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttc                                                   >  2:5609208/1‑93 (MQ=255)
                                      cAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttc                                                   <  1:3362789/93‑1 (MQ=255)
                                       aGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttct                                                  >  2:2587656/1‑93 (MQ=255)
                                        ggCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttctt                                                 <  2:3522522/93‑1 (MQ=255)
                                          cGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttctttt                                               <  2:2292779/93‑1 (MQ=255)
                                           gAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttcttttc                                              <  2:6201121/93‑1 (MQ=255)
                                            aGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTtttcttttct                                             <  1:629618/93‑1 (MQ=255)
                                            aGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTtttcttttct                                             <  1:6389626/93‑1 (MQ=255)
                                               cTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTc                                          <  2:697136/93‑1 (MQ=255)
                                                tGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTcg                                         >  1:1364614/1‑92 (MQ=255)
                                                tGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCa                                         >  1:565941/1‑93 (MQ=255)
                                                tGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCa                                         >  2:93564/1‑93 (MQ=255)
                                                tGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCa                                         >  2:2477860/1‑93 (MQ=255)
                                                tGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCa                                         <  1:4229112/93‑1 (MQ=255)
                                                 gAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAg                                        <  2:5804415/93‑1 (MQ=255)
                                                 gAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAg                                        <  1:2299491/93‑1 (MQ=255)
                                                  aGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAgg                                       <  1:3713186/93‑1 (MQ=255)
                                                   gTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGc                                      <  2:4097889/93‑1 (MQ=255)
                                                    tctatGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCg                                     >  1:3131163/3‑93 (MQ=255)
                                                     atatGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCgt                                    <  1:2908642/93‑1 (MQ=255)
                                                     atatGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCgt                                    <  1:1159981/93‑1 (MQ=255)
                                                      tatGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCgtg                                   >  1:1787553/1‑93 (MQ=255)
                                                        tGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGtt                                 >  1:1223246/1‑93 (MQ=255)
                                                        tGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGtt                                 >  2:5209919/1‑93 (MQ=255)
                                                        tGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGtt                                 >  1:748622/1‑93 (MQ=255)
                                                        tGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGtt                                 <  1:4105517/93‑1 (MQ=255)
                                                          aaaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGtttt                               >  1:3544607/1‑93 (MQ=255)
                                                           aaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGttttt                              >  2:2745399/1‑93 (MQ=255)
                                                           aaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGttttt                              >  2:3200699/1‑93 (MQ=255)
                                                           aaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGttttt                              >  2:4530954/1‑93 (MQ=255)
                                                            aGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTc                             <  2:1738019/93‑1 (MQ=255)
                                                             gACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTcc                            >  1:601514/1‑93 (MQ=255)
                                                                 cgcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGcc                        <  1:2476237/93‑1 (MQ=255)
                                                                  gcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCca                       <  2:1665312/93‑1 (MQ=255)
                                                                  gcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCca                       >  1:5829349/1‑93 (MQ=255)
                                                                    aTTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCcaca                     <  2:3329929/93‑1 (MQ=255)
                                                                     tttGTTATCATCATCCCTGAATT‑CAGAGGTGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTCTCTGTCAGGCGTGTTTTTCCAGCCacac                    <  1:2016252/93‑1 (MQ=255)
                                                                     tttGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCacac                    >  1:3013241/1‑93 (MQ=255)
                                                                      ttGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACAcc                   >  2:2006624/1‑93 (MQ=255)
                                                                         ttATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCa                >  1:5566878/1‑93 (MQ=255)
                                                                          tATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCaa               >  1:4068073/1‑93 (MQ=255)
                                                                          tATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCaa               >  1:2148429/1‑93 (MQ=255)
                                                                          tATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCaa               >  2:858030/1‑93 (MQ=255)
                                                                              atcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACgg           >  1:4971437/1‑93 (MQ=255)
                                                                              atcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACgg           <  1:5784221/93‑1 (MQ=255)
                                                                                catcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGtt         <  1:5342042/93‑1 (MQ=255)
                                                                                catcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGtt         >  1:611656/1‑93 (MQ=255)
                                                                                catcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGtt         <  1:6237994/93‑1 (MQ=255)
                                                                                 atcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTc        >  1:2509988/1‑93 (MQ=255)
                                                                                 atcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTc        >  1:2424702/1‑93 (MQ=255)
                                                                                  tcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCg       >  2:1612169/1‑93 (MQ=255)
                                                                                    ccTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGTCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGt     <  1:4771529/93‑1 (MQ=255)
                                                                                    ccTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGt     >  2:3891562/1‑93 (MQ=255)
                                                                                      tGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTAt   >  1:4334955/1‑93 (MQ=255)
                                                                                      tGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTAt   <  1:3980189/93‑1 (MQ=255)
                                                                                            |                                                                                        
CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATC  >  NC_000913/2812766‑2812946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGGC  >  NC_000913/2812766‑2812952
                                                                                             |                                                                                             
CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCA                                                                                               >  SRR4302537.6135304/1‑94 (MQ=60)
   TAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAG                                                                                           >  SRR4302537.4768701/1‑94 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         <  SRR4302537.2512035/94‑1 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         >  SRR4302537.155253/1‑94 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         >  SRR4302537.4878575/1‑94 (MQ=60)
      TTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATG                                                                                        <  SRR4302537.4189718/94‑1 (MQ=60)
      TTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATG                                                                                        >  SRR4302537.3810174/1‑94 (MQ=60)
      TTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATG                                                                                        <  SRR4302537.5800645/94‑1 (MQ=60)
       TTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGA                                                                                       <  SRR4302537.5273373/94‑1 (MQ=60)
        TTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAA                                                                                      <  SRR4302537.1475900/94‑1 (MQ=60)
        TTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAA                                                                                      >  SRR4302537.2226141/1‑94 (MQ=60)
         TTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAA                                                                                     >  SRR4302537.5856667/1‑94 (MQ=60)
         TTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAA                                                                                     >  SRR4302537.2606316/1‑94 (MQ=60)
         TTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAA                                                                                     <  SRR4302537.2414455/94‑1 (MQ=60)
         TTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAA                                                                                     >  SRR4302537.4067536/1‑94 (MQ=60)
          TTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAT                                                                                    <  SRR4302537.2477114/94‑1 (MQ=60)
          TTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAT                                                                                    >  SRR4302537.4889734/1‑94 (MQ=60)
           TTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATT                                                                                   <  SRR4302537.4730456/94‑1 (MQ=60)
           TTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATT                                                                                   <  SRR4302537.3856690/94‑1 (MQ=60)
           TTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATT                                                                                   <  SRR4302537.5609391/94‑1 (MQ=60)
            TAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTT                                                                                  <  SRR4302537.1603154/94‑1 (MQ=60)
             AAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTT                                                                                 <  SRR4302537.514092/94‑1 (MQ=60)
             AAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTT                                                                                 >  SRR4302537.6409513/1‑94 (MQ=60)
             AAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTT                                                                                 >  SRR4302537.339942/1‑94 (MQ=60)
             AAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTT                                                                                 >  SRR4302537.3536111/1‑94 (MQ=60)
              AAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTG‑TATCATCATCCCTGAATT‑CAGAGATGAAATTTTGG                                                                               >  SRR4302537.5819079/1‑94 (MQ=60)
                   TTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAC                                                                           >  SRR4302537.1448198/1‑94 (MQ=60)
                    TTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACT                                                                          >  SRR4302537.3424303/1‑94 (MQ=60)
                     TCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTC                                                                         >  SRR4302537.6287054/1‑94 (MQ=60)
                     TCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTC                                                                         >  SRR4302537.3793112/1‑94 (MQ=60)
                      CTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCA                                                                        >  SRR4302537.3068074/1‑94 (MQ=60)
                      CTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCA                                                                        >  SRR4302537.2095855/1‑94 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       >  SRR4302537.5606017/1‑94 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       <  SRR4302537.4264182/94‑1 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       >  SRR4302537.1725800/1‑94 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       <  SRR4302537.806708/94‑1 (MQ=60)
                         AACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCGTTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGA                                                                     >  SRR4302537.3478464/1‑94 (MQ=60)
                         AACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGA                                                                     >  SRR4302537.2400017/1‑94 (MQ=60)
                         AACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGA                                                                     >  SRR4302537.1733694/1‑94 (MQ=60)
                         AACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGA                                                                     >  SRR4302537.2445762/1‑94 (MQ=60)
                         AACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGA                                                                     >  SRR4302537.3360230/1‑94 (MQ=60)
                          ACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAG                                                                    <  SRR4302537.1626968/94‑1 (MQ=60)
                           CTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGT                                                                   >  SRR4302537.1006687/1‑94 (MQ=60)
                           CTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGT                                                                   <  SRR4302537.402353/94‑1 (MQ=60)
                           CTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGT                                                                   <  SRR4302537.85532/94‑1 (MQ=60)
                            TCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTG                                                                  >  SRR4302537.2872184/1‑94 (MQ=60)
                             CTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGG                                                                 <  SRR4302537.5020314/94‑1 (MQ=60)
                             CTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGG                                                                 <  SRR4302537.6038175/94‑1 (MQ=60)
                                TCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCT                                                              <  SRR4302537.4543045/94‑1 (MQ=60)
                                TCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCT                                                              >  SRR4302537.6328345/1‑94 (MQ=60)
                                TCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCT                                                              >  SRR4302537.1351904/1‑94 (MQ=60)
                                  TTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTT                                                            >  SRR4302537.1496862/1‑94 (MQ=60)
                                    CCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCCTCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTT                                                          >  SRR4302537.459468/1‑94 (MQ=60)
                                    CCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTT                                                          <  SRR4302537.6170076/94‑1 (MQ=60)
                                    CCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTT                                                          >  SRR4302537.2225728/1‑94 (MQ=60)
                                    CCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTT                                                          >  SRR4302537.2348374/1‑94 (MQ=60)
                                      CAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCT                                                        >  SRR4302537.1885706/1‑94 (MQ=60)
                                      CAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCT                                                        <  SRR4302537.3386607/94‑1 (MQ=60)
                                       AGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTT                                                       <  SRR4302537.1320984/94‑1 (MQ=60)
                                       AGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTT                                                       >  SRR4302537.1663058/1‑94 (MQ=60)
                                          CGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTC                                                    <  SRR4302537.5392415/94‑1 (MQ=60)
                                           GAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCT                                                   <  SRR4302537.1798547/94‑1 (MQ=60)
                                           GAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCT                                                   >  SRR4302537.6072658/1‑94 (MQ=60)
                                            AGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTG                                                  <  SRR4302537.633900/94‑1 (MQ=60)
                                            AGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTG                                                  <  SRR4302537.6433163/94‑1 (MQ=60)
                                            AGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTG                                                  >  SRR4302537.6120658/1‑94 (MQ=60)
                                            AGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTG                                                  <  SRR4302537.981594/94‑1 (MQ=60)
                                             GTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGT                                                 >  SRR4302537.1378058/1‑94 (MQ=60)
                                             GTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGT                                                 <  SRR4302537.68208/94‑1 (MQ=60)
                                             GTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGC                                                 >  SRR4302537.5104889/1‑94 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCG                                               >  SRR4302537.1374123/1‑94 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               >  SRR4302537.569829/1‑94 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               <  SRR4302537.649541/94‑1 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               <  SRR4302537.877358/94‑1 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               >  SRR4302537.5261505/1‑94 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               >  SRR4302537.5312671/1‑94 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              <  SRR4302537.4258557/94‑1 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              >  SRR4302537.1950954/1‑94 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATACCTGAATT‑CAGAGATGCAATTTTGGCCACTCACGAGGGGCCTTTTTCTTTTCTGTCAG                                              >  SRR4302537.2627432/1‑94 (MQ=60)
                                                 GAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGG                                             <  SRR4302537.2315722/94‑1 (MQ=60)
                                                 GAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGG                                             >  SRR4302537.3302438/1‑94 (MQ=60)
                                                 GAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGG                                             <  SRR4302537.6151471/94‑1 (MQ=60)
                                                  AGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGC                                            >  SRR4302537.34313/1‑94 (MQ=60)
                                                  AGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGC                                            <  SRR4302537.3739287/94‑1 (MQ=60)
                                                   GTCTATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCG                                           >  SRR4302537.3153123/1‑94 (MQ=60)
                                                    TATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGT                                          <  SRR4302537.3366361/94‑1 (MQ=60)
                                                     ATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTG                                         <  SRR4302537.2929076/94‑1 (MQ=60)
                                                     ATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTG                                         >  SRR4302537.1800045/1‑94 (MQ=60)
                                                     ATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTG                                         >  SRR4302537.3031146/1‑94 (MQ=60)
                                                     ATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTG                                         <  SRR4302537.1168050/94‑1 (MQ=60)
                                                       ATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTT                                       >  SRR4302537.753728/1‑94 (MQ=60)
                                                       ATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTT                                       >  SRR4302537.1231749/1‑94 (MQ=60)
                                                       ATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTT                                       >  SRR4302537.256937/1‑94 (MQ=60)
                                                       ATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTT                                       >  SRR4302537.533913/1‑94 (MQ=60)
                                                        TGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTT                                      >  SRR4302537.472249/1‑94 (MQ=60)
                                                        TGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTT                                      <  SRR4302537.4134193/94‑1 (MQ=60)
                                                         GAAAGACGCGCATTTGTTATGATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTT                                     <  SRR4302537.2161233/94‑1 (MQ=60)
                                                         GAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTT                                     >  SRR4302537.3569645/1‑94 (MQ=60)
                                                          AAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTT                                    >  SRR4302537.4354359/1‑94 (MQ=60)
                                                            AGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCC                                  >  SRR4302537.3200248/1‑94 (MQ=60)
                                                            AGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCC                                  >  SRR4302537.27234/1‑94 (MQ=60)
                                                            AGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCC                                  >  SRR4302537.605628/1‑94 (MQ=60)
                                                             GACGTGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCA                                 >  SRR4302537.1210802/1‑94 (MQ=60)
                                                               CGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGC                               >  SRR4302537.5696602/1‑94 (MQ=60)
                                                               CGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGC                               >  SRR4302537.3663167/1‑94 (MQ=60)
                                                               CGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGC                               >  SRR4302537.3991420/1‑94 (MQ=60)
                                                                 CGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCA                             <  SRR4302537.2493645/94‑1 (MQ=60)
                                                                 CGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCA                             >  SRR4302537.5869306/1‑94 (MQ=60)
                                                                  GCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCAC                            >  SRR4302537.1607073/1‑94 (MQ=60)
                                                                   CATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACA                           >  SRR4302537.5822762/1‑94 (MQ=60)
                                                                    ATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACAC                          >  SRR4302537.3589280/1‑94 (MQ=60)
                                                                    ATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACAC                          >  SRR4302537.2533846/1‑94 (MQ=60)
                                                                    ATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACAC                          >  SRR4302537.3034251/1‑94 (MQ=60)
                                                                     TTTGTTATCATCATCCCTGAATT‑CAGAGGTGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTCTCTGTCAGGCGTGTTTTTCCAGCCACACC                         <  SRR4302537.2030305/94‑1 (MQ=60)
                                                                     TTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACC                         >  SRR4302537.2059263/1‑94 (MQ=60)
                                                                      TTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCCCGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCG                        <  SRR4302537.3546438/94‑1 (MQ=60)
                                                                       TGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGC                       >  SRR4302537.5639821/1‑94 (MQ=60)
                                                                        GTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCA                      >  SRR4302537.5604926/1‑94 (MQ=60)
                                                                         TTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAA                     >  SRR4302537.4096494/1‑94 (MQ=60)
                                                                         TTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAA                     >  SRR4302537.2163573/1‑94 (MQ=60)
                                                                         TTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAA                     >  SRR4302537.4157363/1‑94 (MQ=60)
                                                                          TATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAA                    >  SRR4302537.4791614/1‑94 (MQ=60)
                                                                           ATCATCATCCCTGAATT‑GAGAGATGAAATTTGGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAAC                   <  SRR4302537.5838819/94‑1 (MQ=60)
                                                                             CATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGG                 >  SRR4302537.5005705/1‑94 (MQ=60)
                                                                              ATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGT                <  SRR4302537.1586536/94‑1 (MQ=60)
                                                                              ATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGT                <  SRR4302537.5823875/94‑1 (MQ=60)
                                                                               TCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTT               >  SRR4302537.615834/1‑94 (MQ=60)
                                                                                CATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTC              <  SRR4302537.5378652/94‑1 (MQ=60)
                                                                                CATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTC              <  SRR4302537.6280885/94‑1 (MQ=60)
                                                                                CATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTC              >  SRR4302537.2527643/1‑94 (MQ=60)
                                                                                CATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTC              >  SRR4302537.2441789/1‑94 (MQ=60)
                                                                                 ATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCG             >  SRR4302537.5722367/1‑94 (MQ=60)
                                                                                   CCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGT           >  SRR4302537.3006570/1‑94 (MQ=60)
                                                                                    CCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGTCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTA          <  SRR4302537.4804475/94‑1 (MQ=60)
                                                                                    CCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTA          <  SRR4302537.338117/94‑1 (MQ=60)
                                                                                     CTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTAT         >  SRR4302537.6274763/1‑94 (MQ=60)
                                                                                     CTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTAT         >  SRR4302537.4365059/1‑94 (MQ=60)
                                                                                      TGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATC        <  SRR4302537.5415021/94‑1 (MQ=60)
                                                                                      TGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATC        <  SRR4302537.4008047/94‑1 (MQ=60)
                                                                                      TGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATC        >  SRR4302537.2335266/1‑94 (MQ=60)
                                                                                       GAATT‑CAGGGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCA       <  SRR4302537.4131284/94‑1 (MQ=60)
                                                                                       GAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCA       >  SRR4302537.767604/1‑94 (MQ=60)
                                                                                        AATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAG      >  SRR4302537.2351219/1‑94 (MQ=60)
                                                                                        AATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAG      <  SRR4302537.3465130/94‑1 (MQ=60)
                                                                                         ATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCCGC     >  SRR4302537.921647/1‑94 (MQ=60)
                                                                                         ATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGC     >  SRR4302537.1733519/1‑94 (MQ=60)
                                                                                         ATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGC     <  SRR4302537.3274600/94‑1 (MQ=60)
                                                                                            TCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGG   >  SRR4302537.6471895/1‑94 (MQ=60)
                                                                                             CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGGC  >  SRR4302537.4658831/1‑94 (MQ=60)
                                                                                             CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGGC  >  SRR4302537.3789809/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGGC  >  NC_000913/2812766‑2812952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑