Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,820,999	T→G	Y265S (TAC→TCC)	recA ←	RecA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,820,999	0	T	G	100.0%	882.4 / NA	253	Y265S (TAC→TCC)	recA	RecA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (130/123); total (130/123)

Only 100 of 258 total aligned reads displayed.

TTGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGTAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCG  >  NC_000913/2820909‑2821088

ttGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGag                                                                                         >  2:3708290/1‑93 (MQ=255)

 tGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGgaga                                                                                        <  1:5854889/93‑1 (MQ=255)

   tAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAgg                                                                                      <  2:2072833/93‑1 (MQ=255)

   tAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAgg                                                                                      <  1:4038507/93‑1 (MQ=255)

     gCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGAt                                                                                    <  2:1967440/93‑1 (MQ=255)

      cTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATc                                                                                   <  1:1010171/93‑1 (MQ=255)

      cTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATc                                                                                   <  2:2141930/93‑1 (MQ=255)

      cTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATc                                                                                   <  1:2790873/93‑1 (MQ=255)

       tGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCt                                                                                  <  2:3273230/93‑1 (MQ=255)

       tGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCt                                                                                  >  1:2710878/1‑93 (MQ=255)

       tGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCt                                                                                  <  1:3246807/93‑1 (MQ=255)

        gTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTg                                                                                 <  1:185704/93‑1 (MQ=255)

        gTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTg                                                                                 >  2:84620/1‑93 (MQ=255)

         tACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTgg                                                                                <  2:6157900/93‑1 (MQ=255)

         tACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTgg                                                                                <  1:275296/93‑1 (MQ=255)

          aCCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGa                                                                               >  1:5325877/1‑93 (MQ=255)

           ccACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGaa                                                                              <  1:6184395/93‑1 (MQ=255)

            cACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGTAAt                                                                             <  2:4875217/93‑1 (MQ=255)

            cACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGCAt                                                                             >  1:2982478/1‑93 (MQ=255)

            cACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAAt                                                                             >  2:3647216/1‑93 (MQ=255)

            cACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAAt                                                                             >  1:3711325/1‑93 (MQ=255)

             aCGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAAtt                                                                            >  1:1608203/1‑93 (MQ=255)

             aCGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAAtt                                                                            >  1:502101/1‑93 (MQ=255)

                  ccTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGcc                                                                       <  2:4465224/93‑1 (MQ=255)

                   cTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCt                                                                      >  2:5899596/1‑93 (MQ=255)

                    tGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTg                                                                     >  2:2687128/1‑93 (MQ=255)

                    tGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTg                                                                     >  1:837408/1‑93 (MQ=255)

                     gCTTTCTCGATCAGCTTCTC‑TTTACGCCCAGGGCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCCGAGAGGATCTGGAATTCAGCCTGtt                                                                   >  1:1756641/1‑93 (MQ=255)

                      cTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGtt                                                                   >  1:57182/1‑93 (MQ=255)

                      cTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGtt                                                                   >  1:5458138/1‑93 (MQ=255)

                       tttCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGttt                                                                  <  2:1274884/93‑1 (MQ=255)

                       tttCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGttt                                                                  >  2:2587082/1‑93 (MQ=255)

                        ttCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTa                                                                 >  2:5787152/1‑93 (MQ=255)

                         tctcGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTaa                                                                <  1:5433107/93‑1 (MQ=255)

                          ctcGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTaaa                                                               <  1:4461673/93‑1 (MQ=255)

                          ctcGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTaaa                                                               <  1:2226382/93‑1 (MQ=255)

                           tcGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAAc                                                              <  2:4828923/93‑1 (MQ=255)

                               tCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGgcg                                                          <  2:4547861/93‑1 (MQ=255)

                               tCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGgcg                                                          <  2:2619068/93‑1 (MQ=255)

                                 aGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCa                                                        >  1:1929163/1‑93 (MQ=255)

                                 aGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCa                                                        >  1:303506/1‑93 (MQ=255)

                                  gCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAg                                                       >  2:573756/1‑93 (MQ=255)

                                   cTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGc                                                      >  1:5911112/1‑93 (MQ=255)

                                   cTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGc                                                      <  1:3157689/93‑1 (MQ=255)

                                   cTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGc                                                      >  1:5250597/1‑93 (MQ=255)

                                     tctcTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGa                                                    >  2:1637726/1‑93 (MQ=255)

                                      ctctTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAt                                                   >  2:2280138/1‑93 (MQ=255)

                                      ctctTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAt                                                   <  1:2175322/93‑1 (MQ=255)

                                       tctTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAtt                                                  <  2:4031574/93‑1 (MQ=255)

                                       tctTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAtt                                                  >  1:3742551/1‑93 (MQ=255)

                                       tctTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAtt                                                  >  1:4526735/1‑93 (MQ=255)

                                       tctTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAtt                                                  >  1:4905865/1‑93 (MQ=255)

                                        ctTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAttt                                                 <  1:2067523/93‑1 (MQ=255)

                                        ctTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAttt                                                 >  2:5952763/1‑93 (MQ=255)

                                         ttttACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAtttt                                                >  1:6293122/1‑93 (MQ=255)

                                          tttACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTg                                               >  1:5660902/1‑93 (MQ=255)

                                           ttACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTAGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGt                                              >  2:5551216/1‑93 (MQ=255)

                                             aCGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGttc                                            <  2:3420368/93‑1 (MQ=255)

                                                 ccAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATTTAGAATTCAACCTGTTTAAACGGCGCAGACATTTTGTTCTTca                                        >  2:5297326/1‑93 (MQ=255)

                                                 ccAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGttcttta                                        >  1:3504097/1‑91 (MQ=255)

                                                 ccAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTca                                        <  2:6425362/93‑1 (MQ=255)

                                                 ccAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTca                                        >  2:80510/1‑93 (MQ=255)

                                                 ccAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTca                                        <  1:1151688/93‑1 (MQ=255)

                                                  cAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTcac                                       >  1:5141288/1‑93 (MQ=255)

                                                  cAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTcac                                       >  2:3107133/1‑93 (MQ=255)

                                                    ggTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTcacca                                     >  1:1430316/1‑93 (MQ=255)

                                                    ggTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTcacca                                     >  1:5478439/1‑93 (MQ=255)

                                                     gTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTcaccac                                    <  2:4235728/93‑1 (MQ=255)

                                                       cAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACtt                                  >  1:4645741/1‑93 (MQ=255)

                                                       cAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACtt                                  <  1:6422438/93‑1 (MQ=255)

                                                        aaCCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACttt                                 >  2:6362861/1‑93 (MQ=255)

                                                        aaCCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACttt                                 <  1:3562089/93‑1 (MQ=255)

                                                        aaCCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACttt                                 >  1:4850786/1‑93 (MQ=255)

                                                         aCCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTc                                >  2:2809689/1‑93 (MQ=255)

                                                          ccAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCa                               <  1:1363035/93‑1 (MQ=255)

                                                            aGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAcg                             <  2:719718/93‑1 (MQ=255)

                                                            aGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAcg                             >  1:3320005/1‑93 (MQ=255)

                                                            aGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAcg                             <  1:3949389/93‑1 (MQ=255)

                                                             gTTCTCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAcgc                            >  1:909498/1‑93 (MQ=255)

                                                             gTTCGCCTTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAcgc                            <  1:664349/93‑1 (MQ=255)

                                                             gTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGTATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAcgc                            >  1:5827885/1‑93 (MQ=255)

                                                             gTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAcgc                            <  1:3838052/93‑1 (MQ=255)

                                                              ttCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAcgcg                           >  2:1545043/1‑93 (MQ=255)

                                                                 gCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGt                        <  2:4063036/93‑1 (MQ=255)

                                                                  ccGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGtt                       <  2:1336328/93‑1 (MQ=255)

                                                                  ccGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGtt                       <  2:3193075/93‑1 (MQ=255)

                                                                    gTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTc                     >  2:3008761/1‑93 (MQ=255)

                                                                    gTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTc                     >  2:5450135/1‑93 (MQ=255)

                                                                         aGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTAc                >  2:395770/1‑93 (MQ=255)

                                                                          gTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTAcc               >  2:2958774/1‑93 (MQ=255)

                                                                            tGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACcca             <  1:419466/93‑1 (MQ=255)

                                                                             gATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACccac            <  2:2729745/93‑1 (MQ=255)

                                                                              aTACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACccacc           >  1:2264680/1‑93 (MQ=255)

                                                                               tACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACccacca          <  1:5153159/93‑1 (MQ=255)

                                                                                cccTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCcaccac         <  2:1170890/92‑1 (MQ=255)

                                                                                  cTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGt       <  2:1517399/93‑1 (MQ=255)

                                                                                   ttCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGtt      <  1:1713416/93‑1 (MQ=255)

                                                                                    tCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGttt     <  1:4365992/93‑1 (MQ=255)

                                                                                       ccGGAGAGGATTTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCg  >  2:3895634/1‑93 (MQ=255)

                                                                                       ccGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCg  >  2:5167755/1‑93 (MQ=255)

TTGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGTAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCG  >  NC_000913/2820909‑2821088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTTTGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGTAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCGCC  >  NC_000913/2820906‑2821090

CCTTTGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGG                                                                                             <  SRR4302537.525908/94‑1 (MQ=60)

 CTTTGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGA                                                                                            >  SRR4302537.4374981/1‑94 (MQ=60)

 CTTTGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGA                                                                                            <  SRR4302537.2966884/94‑1 (MQ=60)

    TGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAG                                                                                         >  SRR4302537.38957/1‑94 (MQ=60)

    TGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAG                                                                                         <  SRR4302537.5895049/94‑1 (MQ=60)

    TGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAG                                                                                         <  SRR4302537.5934771/94‑1 (MQ=60)

     GTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGG                                                                                        >  SRR4302537.5371765/1‑94 (MQ=60)

     GTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGG                                                                                        >  SRR4302537.1767212/1‑94 (MQ=60)

     GTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGG                                                                                        <  SRR4302537.6364857/94‑1 (MQ=60)

      TAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGA                                                                                       <  SRR4302537.4066764/94‑1 (MQ=60)

       AGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGAT                                                                                      <  SRR4302537.1409427/94‑1 (MQ=60)

       AGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGAT                                                                                      >  SRR4302537.2738157/1‑94 (MQ=60)

       AGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGAT                                                                                      >  SRR4302537.913662/1‑94 (MQ=60)

         CTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCT                                                                                    <  SRR4302537.2810382/94‑1 (MQ=60)

         CTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCT                                                                                    <  SRR4302537.4074641/94‑1 (MQ=60)

         CTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCT                                                                                    >  SRR4302537.2729811/1‑94 (MQ=60)

         CTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCT                                                                                    <  SRR4302537.1017135/94‑1 (MQ=60)

          TGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTG                                                                                   <  SRR4302537.3269688/94‑1 (MQ=60)

           GTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGG                                                                                  <  SRR4302537.187025/94‑1 (MQ=60)

            TACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGA                                                                                 <  SRR4302537.5507719/94‑1 (MQ=60)

            TACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGA                                                                                 <  SRR4302537.277225/94‑1 (MQ=60)

            TACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGA                                                                                 >  SRR4302537.5362421/1‑94 (MQ=60)

              CCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGCAT                                                                               >  SRR4302537.3003330/1‑94 (MQ=60)

              CCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAAT                                                                               <  SRR4302537.6226997/94‑1 (MQ=60)

              CCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAAT                                                                               >  SRR4302537.3737410/1‑94 (MQ=60)

               CACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATT                                                                              >  SRR4302537.505551/1‑94 (MQ=60)

               CACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATT                                                                              >  SRR4302537.1619447/1‑94 (MQ=60)

                 CGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCA                                                                            >  SRR4302537.3620844/1‑94 (MQ=60)

                 CGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCA                                                                            >  SRR4302537.4526308/1‑94 (MQ=60)

                 CGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCA                                                                            <  SRR4302537.2819618/94‑1 (MQ=60)

                  GCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAG                                                                           >  SRR4302537.6242209/1‑94 (MQ=60)

                  GCGCCTGCTTTCTCGATCAGCTTCTCTTGTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAG                                                                           <  SRR4302537.5881690/94‑1 (MQ=60)

                    GCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCC                                                                         >  SRR4302537.1303790/1‑94 (MQ=60)

                     CCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCT                                                                        <  SRR4302537.4355031/94‑1 (MQ=60)

                      CTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTG                                                                       >  SRR4302537.843145/1‑94 (MQ=60)

                       TGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGT                                                                      >  SRR4302537.760492/1‑94 (MQ=60)

                       TGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGT                                                                      >  SRR4302537.4405581/1‑94 (MQ=60)

                       TGCTTTCTCGATCAGCTTCTC‑TTTACGCCCAGGGCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCCGAGAGGATCTGGAATTCAGCCTGTT                                                                     >  SRR4302537.1768885/1‑94 (MQ=60)

                        GCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTT                                                                     >  SRR4302537.57602/1‑94 (MQ=60)

                        GCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTT                                                                     >  SRR4302537.5495367/1‑94 (MQ=60)

                        GCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTT                                                                     <  SRR4302537.2769614/94‑1 (MQ=60)

                        GCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTT                                                                     >  SRR4302537.5710352/1‑94 (MQ=60)

                           TTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAA                                                                  <  SRR4302537.4764418/94‑1 (MQ=60)

                           TTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAA                                                                  <  SRR4302537.5780425/94‑1 (MQ=60)

                            TCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAA                                                                 <  SRR4302537.5470163/94‑1 (MQ=60)

                            TCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAA                                                                 <  SRR4302537.5489/94‑1 (MQ=60)

                             CTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAAC                                                                <  SRR4302537.4492520/94‑1 (MQ=60)

                             CTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAAC                                                                <  SRR4302537.2242085/94‑1 (MQ=60)

                              TCGATCAGCTTTTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACG                                                               <  SRR4302537.1539192/94‑1 (MQ=60)

                              TCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACG                                                               <  SRR4302537.5198148/94‑1 (MQ=60)

                               CGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGG                                                              <  SRR4302537.3585243/94‑1 (MQ=60)

                                GATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGC                                                             <  SRR4302537.1148246/94‑1 (MQ=60)

                                GATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGC                                                             <  SRR4302537.2796704/94‑1 (MQ=60)

                                 ATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCG                                                            >  SRR4302537.5180114/1‑94 (MQ=60)

                                 ATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCG                                                            >  SRR4302537.3155875/1‑94 (MQ=60)

                                   CAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCA                                                          >  SRR4302537.1942552/1‑94 (MQ=60)

                                   CAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCA                                                          <  SRR4302537.495220/94‑1 (MQ=60)

                                   CAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCA                                                          >  SRR4302537.305617/1‑94 (MQ=60)

                                     GCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGC                                                        >  SRR4302537.5286728/1‑94 (MQ=60)

                                     GCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGC                                                        >  SRR4302537.5951672/1‑94 (MQ=60)

                                      CTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCG                                                       >  SRR4302537.3034940/1‑94 (MQ=60)

                                      CTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCG                                                       <  SRR4302537.3179851/94‑1 (MQ=60)

                                       TTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGA                                                      >  SRR4302537.5922557/1‑94 (MQ=60)

                                       TTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGA                                                      >  SRR4302537.2371729/1‑94 (MQ=60)

                                        TCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGAT                                                     <  SRR4302537.2175882/94‑1 (MQ=60)

                                         CTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATT                                                    >  SRR4302537.4939729/1‑94 (MQ=60)

                                         CTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATT                                                    >  SRR4302537.3989059/1‑94 (MQ=60)

                                         CTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATT                                                    <  SRR4302537.2190656/94‑1 (MQ=60)

                                         CTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATT                                                    >  SRR4302537.3768834/1‑94 (MQ=60)

                                         CTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATT                                                    >  SRR4302537.4558054/1‑94 (MQ=60)

                                          TCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTT                                                   <  SRR4302537.2065519/94‑1 (MQ=60)

                                          TCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTT                                                   <  SRR4302537.6307093/94‑1 (MQ=60)

                                           CTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTT                                                  <  SRR4302537.2228814/94‑1 (MQ=60)

                                           CTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTT                                                  <  SRR4302537.2082048/94‑1 (MQ=60)

                                           CTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTT                                                  >  SRR4302537.3270697/1‑94 (MQ=60)

                                           CTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTT                                                  >  SRR4302537.6336241/1‑94 (MQ=60)

                                            TTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGGTTTTG                                                 >  SRR4302537.3526334/1‑94 (MQ=60)

                                            TTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTG                                                 >  SRR4302537.5699642/1‑94 (MQ=60)

                                            TTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTG                                                 >  SRR4302537.5666076/1‑94 (MQ=60)

                                            TTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTG                                                 >  SRR4302537.5046366/1‑94 (MQ=60)

                                             TTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGT                                                <  SRR4302537.5408765/94‑1 (MQ=60)

                                              TTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTT                                               <  SRR4302537.3935765/94‑1 (MQ=60)

                                              TTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTT                                               <  SRR4302537.3851520/94‑1 (MQ=60)

                                              TTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTT                                               <  SRR4302537.4713752/94‑1 (MQ=60)

                                                ACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCT                                             >  SRR4302537.4566442/1‑94 (MQ=60)

                                                 CGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTT                                            <  SRR4302537.3723233/94‑1 (MQ=60)

                                                 CGCCAAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTT                                            <  SRR4302537.3208355/94‑1 (MQ=60)

                                                  GCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTC                                           <  SRR4302537.5169048/94‑1 (MQ=60)

                                                  GCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTC                                           <  SRR4302537.4898786/94‑1 (MQ=60)

                                                   CCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTTA                                          >  SRR4302537.3528888/1‑94 (MQ=60)

                                                    CCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCAC                                         >  SRR4302537.1784549/1‑94 (MQ=60)

                                                    CCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCAC                                         >  SRR4302537.5176713/1‑94 (MQ=60)

                                                    CCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCAC                                         >  SRR4302537.2209215/1‑94 (MQ=60)

                                                    CCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCAC                                         <  SRR4302537.1159696/94‑1 (MQ=60)

                                                     CAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACC                                        >  SRR4302537.1506627/1‑94 (MQ=60)

                                                      AGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCA                                       >  SRR4302537.5515837/1‑94 (MQ=60)

                                                      AGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCA                                       >  SRR4302537.1440274/1‑94 (MQ=60)

                                                      AGGTCAACCAGTTCGCCGTAGAAGCTGATAACTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTACACGGCGCAGCGATTTTGTTCTTCACCA                                       >  SRR4302537.3078264/1‑94 (MQ=60)

                                                       GGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCAC                                      >  SRR4302537.1971830/1‑94 (MQ=60)

                                                       GGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCAC                                      >  SRR4302537.6370892/1‑94 (MQ=60)

                                                         TCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTT                                    >  SRR4302537.1744058/1‑94 (MQ=60)

                                                         TCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTT                                    >  SRR4302537.4677864/1‑94 (MQ=60)

                                                          CAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTT                                   >  SRR4302537.4884254/1‑94 (MQ=60)

                                                          CAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTT                                   >  SRR4302537.3805126/1‑94 (MQ=60)

                                                          CAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTT                                   <  SRR4302537.6466091/94‑1 (MQ=60)

                                                          CAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTT                                   <  SRR4302537.5259896/94‑1 (MQ=60)

                                                           AACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTC                                  <  SRR4302537.3587215/94‑1 (MQ=60)

                                                            ACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCA                                 >  SRR4302537.3358273/1‑94 (MQ=60)

                                                             CCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAC                                <  SRR4302537.1372530/94‑1 (MQ=60)

                                                             CCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAC                                >  SRR4302537.6070254/1‑94 (MQ=60)

                                                             CCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAC                                <  SRR4302537.5776413/94‑1 (MQ=60)

                                                             CCAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCAC                                >  SRR4302537.5497442/1‑94 (MQ=60)

                                                              CAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACG                               <  SRR4302537.1686717/94‑1 (MQ=60)

                                                              CAGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACG                               >  SRR4302537.3343487/1‑94 (MQ=60)

                                                               AGTTCTCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGC                              >  SRR4302537.915777/1‑94 (MQ=60)

                                                               AGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGTATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGC                              >  SRR4302537.5867828/1‑94 (MQ=60)

                                                               AGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGC                              >  SRR4302537.6502718/1‑94 (MQ=60)

                                                               AGTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGC                              <  SRR4302537.3977012/94‑1 (MQ=60)

                                                                GTTCGCCTTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCG                             <  SRR4302537.668875/94‑1 (MQ=60)

                                                                GTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCG                             <  SRR4302537.3750834/94‑1 (MQ=60)

                                                                GTTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCG                             <  SRR4302537.3864940/94‑1 (MQ=60)

                                                                 TTCGCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGG                            <  SRR4302537.1931920/94‑1 (MQ=60)

                                                                    GCCGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTT                         >  SRR4302537.441797/1‑94 (MQ=60)

                                                                      CGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTC                       <  SRR4302537.3217894/94‑1 (MQ=60)

                                                                      CGTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTC                       >  SRR4302537.5714799/1‑94 (MQ=60)

                                                                       GTAGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCG                      <  SRR4302537.778255/94‑1 (MQ=60)

                                                                         AGAAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCT                    >  SRR4302537.2721795/1‑94 (MQ=60)

                                                                           AAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTAC                  >  SRR4302537.5325351/1‑94 (MQ=60)

                                                                           AAGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTAC                  >  SRR4302537.285103/1‑94 (MQ=60)

                                                                            AGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACC                 <  SRR4302537.1344314/94‑1 (MQ=60)

                                                                            AGTTGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACC                 <  SRR4302537.4608224/94‑1 (MQ=60)

                                                                               TGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCAC              <  SRR4302537.4140579/94‑1 (MQ=60)

                                                                               TGATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCAC              <  SRR4302537.422376/94‑1 (MQ=60)

                                                                                GATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCTCTTTCACGCGGGTTTCGCTACCCACC             <  SRR4302537.2266630/94‑1 (MQ=60)

                                                                                GATACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACC             >  SRR4302537.2280668/1‑94 (MQ=60)

                                                                                  TACCTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCAC           <  SRR4302537.5188666/94‑1 (MQ=60)

                                                                                     CTTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTT        <  SRR4302537.5178395/94‑1 (MQ=60)

                                                                                      TTCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTT       <  SRR4302537.1725378/94‑1 (MQ=60)

                                                                                       TCGCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTT      <  SRR4302537.4396177/94‑1 (MQ=60)

                                                                                         GCCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCG    <  SRR4302537.1814586/94‑1 (MQ=60)

                                                                                          CCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCGC   >  SRR4302537.4357117/1‑94 (MQ=60)

                                                                                          CCGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCGC   >  SRR4302537.4937024/1‑94 (MQ=60)

                                                                                           CGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCGCC  >  SRR4302537.1805014/1‑94 (MQ=60)

                                                                                           CGGAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCGCC  >  SRR4302537.67035/1‑94 (MQ=60)

CCTTTGTAGCTGTACCACGCGCCTGCTTTCTCGATCAGCTTCTCTTTTACGCCCAGGTCAACCAGTTCGCCGTAGAAGTTGATACCTTCGCCGTAGAGGATCTGGAATTCAGCCTGTTTAAACGGCGCAGCGATTTTGTTCTTCACCACTTTCACGCGGGTTTCGCTACCCACCACGTTTTCGCC  >  NC_000913/2820906‑2821090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`