Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,941,717 A→G H120R (CAC→CGC)  b2810 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,941,7170AG100.0% 713.1 / NA 209H120R (CAC→CGC) b2810hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (115/94);  total (115/94)

Only 100 of 235 total aligned reads displayed.

CCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCACGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGATG  >  NC_000913/2941627‑2941806
                                                                                          |                                                                                         
ccacTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACcgcg                                                                                         >  1:2540534/1‑93 (MQ=255)
ccacTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACcgcg                                                                                         >  2:1293359/1‑93 (MQ=255)
 cacTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCgcgc                                                                                        >  1:3860542/1‑93 (MQ=255)
  acTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACcgcggc                                                                                       >  2:240563/1‑91 (MQ=255)
   cTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCa                                                                                      >  2:4197763/1‑93 (MQ=255)
   cTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCa                                                                                      >  1:5722743/1‑93 (MQ=255)
       aTCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCt                                                                                  >  2:5096040/1‑93 (MQ=255)
        tCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTc                                                                                 >  1:4190913/1‑93 (MQ=255)
         ccATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCg                                                                                >  2:4463405/1‑93 (MQ=255)
          cATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGt                                                                               >  1:3021473/1‑93 (MQ=255)
          cATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGt                                                                               >  1:208165/1‑93 (MQ=255)
          cATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGt                                                                               >  2:4285041/1‑93 (MQ=255)
          cATCAACATGGGGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCTCGCCAACCTCGt                                                                               >  2:3956002/1‑93 (MQ=255)
            tCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTcc                                                                             >  1:2705505/1‑93 (MQ=255)
             cAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTccc                                                                            <  2:406729/93‑1 (MQ=255)
              aaCATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTcccc                                                                           >  1:80516/1‑93 (MQ=255)
               aCATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCt                                                                          >  2:722867/1‑93 (MQ=255)
               aCATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCt                                                                          <  1:2911159/93‑1 (MQ=255)
                cATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTg                                                                         >  1:4453927/1‑93 (MQ=255)
                cATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTg                                                                         >  1:4527063/1‑93 (MQ=255)
                  tggtggCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGc                                                                       >  2:5720258/1‑93 (MQ=255)
                      ggCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGAt                                                                   >  1:5167566/1‑93 (MQ=255)
                      ggCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGAt                                                                   <  1:484769/93‑1 (MQ=255)
                         acaATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGt                                                                >  2:5494022/1‑93 (MQ=255)
                         acaATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGt                                                                >  2:2824260/1‑93 (MQ=255)
                         acaATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGt                                                                <  1:1395430/93‑1 (MQ=255)
                         acaATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGt                                                                <  1:5776549/93‑1 (MQ=255)
                             tGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGcc                                                            >  1:1194506/1‑93 (MQ=255)
                              gCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGccc                                                           <  2:1712468/93‑1 (MQ=255)
                              gCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGccc                                                           >  1:326423/1‑93 (MQ=255)
                               cTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCca                                                          >  1:6342743/1‑93 (MQ=255)
                                tATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCcaa                                                         <  1:6062645/93‑1 (MQ=255)
                                 aTGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCcacc                                                        >  1:4486652/1‑91 (MQ=255)
                                 aTGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCcaac                                                        <  2:3774870/93‑1 (MQ=255)
                                   gcgcGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCcaacaa                                                      <  1:1123734/93‑1 (MQ=255)
                                      ctcccgcgtcGGCAGCCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCACCAAACt                                                   <  2:2259469/90‑1 (MQ=255)
                                      cgtccgcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACt                                                   >  2:1937891/1‑93 (MQ=255)
                                      cgtccgcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACt                                                   <  1:214448/93‑1 (MQ=255)
                                      cgtccgcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACt                                                   >  2:5875418/1‑93 (MQ=255)
                                       gtccgcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTg                                                  <  2:6109239/93‑1 (MQ=255)
                                        tccgcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTgg                                                 <  1:408977/93‑1 (MQ=255)
                                         ccgcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGa                                                <  2:948418/93‑1 (MQ=255)
                                         ccgcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGa                                                >  2:1595243/1‑93 (MQ=255)
                                          cgcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAg                                               <  2:2591183/93‑1 (MQ=255)
                                          cgcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAg                                               >  2:1778993/1‑93 (MQ=255)
                                           gcgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGc                                              <  2:1619393/93‑1 (MQ=255)
                                            cgtcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGcc                                             >  1:2010238/1‑93 (MQ=255)
                                              tcTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCaa                                           >  2:115063/1‑93 (MQ=255)
                                                tGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAg                                         >  2:1475434/1‑93 (MQ=255)
                                                 gCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAgt                                        >  2:4880786/1‑93 (MQ=255)
                                                 gCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAgt                                        <  1:3221582/93‑1 (MQ=255)
                                                  cAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAgtg                                       <  2:4955495/93‑1 (MQ=255)
                                                  cAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAgtg                                       <  1:679125/93‑1 (MQ=255)
                                                   aaCCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAgtgg                                      >  2:1041049/1‑93 (MQ=255)
                                                   aaCCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAgtgg                                      <  2:5750668/93‑1 (MQ=255)
                                                   aaCCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAgtgg                                      >  1:1323387/1‑93 (MQ=255)
                                                    aCCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAgtggg                                     >  1:1887369/1‑92 (MQ=255)
                                                      cGGGCGATGAGATTATTGTCAGCGTGGCAGGACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGGGGTGa                                   >  1:4764628/1‑93 (MQ=255)
                                                      cGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGa                                   >  1:4393894/1‑93 (MQ=255)
                                                        ggCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGaaa                                 <  1:223586/93‑1 (MQ=255)
                                                        ggCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGaaa                                 <  2:4654885/93‑1 (MQ=255)
                                                        ggCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGaaa                                 <  1:2832882/93‑1 (MQ=255)
                                                          cGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAAtt                               <  2:3167511/93‑1 (MQ=255)
                                                           gATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTg                              >  2:2728720/1‑93 (MQ=255)
                                                            aTGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGc                             <  1:1571210/93‑1 (MQ=255)
                                                            aTGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGc                             >  2:1529977/1‑93 (MQ=255)
                                                            aTGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCATCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGc                             <  1:6243831/93‑1 (MQ=255)
                                                             tGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGcc                            <  2:3005910/93‑1 (MQ=255)
                                                             tGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGcc                            <  1:517044/93‑1 (MQ=255)
                                                             tGAGATTATTGTCAGCGTGGCAGAACACCGCGACAACCTCGTCCCCTGGCTGATGGACGCTCAACAAACTCGAGCCAAAGTGGTGACAGTGcc                            >  2:3384433/1‑93 (MQ=255)
                                                               agaTTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGc                          >  1:2640458/1‑93 (MQ=255)
                                                                gaTTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCt                         <  2:2772565/93‑1 (MQ=255)
                                                                  ttattGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTa                       <  1:6435819/93‑1 (MQ=255)
                                                                   tattGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTaa                      <  2:5351089/93‑1 (MQ=255)
                                                                   tattGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTaa                      <  2:5182940/93‑1 (MQ=255)
                                                                    tttGGCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAAt                     <  1:2456518/92‑1 (MQ=255)
                                                                    attGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAAt                     >  1:859996/1‑93 (MQ=255)
                                                                    attGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAAt                     >  2:2192911/1‑93 (MQ=255)
                                                                     ttGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATg                    <  2:5260173/93‑1 (MQ=255)
                                                                     ttGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATg                    <  2:3489158/93‑1 (MQ=255)
                                                                     ttGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATg                    >  1:640141/1‑93 (MQ=255)
                                                                     ttGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATg                    <  1:3732744/93‑1 (MQ=255)
                                                                     ttGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATg                    >  1:1688995/1‑93 (MQ=255)
                                                                        tCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATgcgc                 <  1:239121/93‑1 (MQ=255)
                                                                        tCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATgcgc                 <  2:304032/93‑1 (MQ=255)
                                                                         cAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCa                <  2:3974495/93‑1 (MQ=255)
                                                                         cAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCa                <  2:3536067/93‑1 (MQ=255)
                                                                          aGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAg               >  2:4801867/1‑93 (MQ=255)
                                                                          aGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAg               >  1:3403349/1‑93 (MQ=255)
                                                                           gCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCaac              >  1:5362109/1‑91 (MQ=255)
                                                                              tGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGAc           <  1:5587548/93‑1 (MQ=255)
                                                                              tGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGAc           <  1:5667816/93‑1 (MQ=255)
                                                                              tGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGAc           <  2:252575/93‑1 (MQ=255)
                                                                               ggCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACt          >  2:5477714/1‑93 (MQ=255)
                                                                                   gAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGcca      >  1:6206412/1‑92 (MQ=255)
                                                                                   gAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCg      >  2:806487/1‑93 (MQ=255)
                                                                                    aaCACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCgg     >  1:2353822/1‑93 (MQ=255)
                                                                                     acacCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGa    >  1:3591316/1‑93 (MQ=255)
                                                                                     acacCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGa    <  2:6365567/93‑1 (MQ=255)
                                                                                     acacCGCGCCAACCTCGTCCCCTGGCTGATGGCCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGa    >  1:4346824/1‑93 (MQ=255)
                                                                                          |                                                                                         
CCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCACGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGATG  >  NC_000913/2941627‑2941806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCACCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCACGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGATGTCG  >  NC_000913/2941624‑2941809
                                                                                             |                                                                                            
GCACCAGTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCG                                                                                              <  SRR4302537.4505871/94‑1 (MQ=60)
 CACCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGC                                                                                             <  SRR4302537.347393/94‑1 (MQ=60)
 CACCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGC                                                                                             >  SRR4302537.5454866/1‑94 (MQ=60)
 AACCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGC                                                                                             >  SRR4302537.1494389/1‑94 (MQ=60)
  ACCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCG                                                                                            >  SRR4302537.970960/1‑94 (MQ=60)
  ACCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCG                                                                                            >  SRR4302537.2558349/1‑94 (MQ=60)
  ACCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCG                                                                                            <  SRR4302537.5550681/94‑1 (MQ=60)
   CCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGC                                                                                           >  SRR4302537.1550900/1‑94 (MQ=60)
   CCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGC                                                                                           >  SRR4302537.3887565/1‑94 (MQ=60)
   CCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGC                                                                                           >  SRR4302537.696529/1‑94 (MQ=60)
   CCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGC                                                                                           >  SRR4302537.2293818/1‑94 (MQ=60)
   CCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGAGTATTGTCAGCGTGGCAGAACACCGCGC                                                                                           >  SRR4302537.2826375/1‑94 (MQ=60)
     ACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCA                                                                                         >  SRR4302537.5761915/1‑94 (MQ=60)
     ACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCA                                                                                         >  SRR4302537.6444763/1‑94 (MQ=60)
     ACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAAAACCGCGCCA                                                                                         >  SRR4302537.1378888/1‑94 (MQ=60)
      CTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAA                                                                                        <  SRR4302537.404158/94‑1 (MQ=60)
      CTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAA                                                                                        >  SRR4302537.2205671/1‑94 (MQ=60)
       TGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAAC                                                                                       >  SRR4302537.1779678/1‑94 (MQ=60)
          ATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTC                                                                                    >  SRR4302537.4220186/1‑94 (MQ=60)
            CCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGT                                                                                  >  SRR4302537.209663/1‑94 (MQ=60)
            CCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGT                                                                                  >  SRR4302537.2123334/1‑94 (MQ=60)
            CCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGT                                                                                  >  SRR4302537.3042537/1‑94 (MQ=60)
              ATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCCACCTCGTCC                                                                                >  SRR4302537.438028/1‑94 (MQ=60)
              ATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCC                                                                                >  SRR4302537.4108706/1‑94 (MQ=60)
              ATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCC                                                                                >  SRR4302537.2724389/1‑94 (MQ=60)
              ATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCC                                                                                >  SRR4302537.4539808/1‑94 (MQ=60)
              ATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCC                                                                                >  SRR4302537.4493990/1‑94 (MQ=60)
                CAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCC                                                                              <  SRR4302537.4146017/94‑1 (MQ=60)
                CAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCC                                                                              >  SRR4302537.81108/1‑94 (MQ=60)
                 AACATGGTGGCACAATGCTATGCGCGGCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCT                                                                             <  SRR4302537.1234561/94‑1 (MQ=60)
                  ACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTG                                                                            >  SRR4302537.4558386/1‑94 (MQ=60)
                  ACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTG                                                                            <  SRR4302537.2931611/94‑1 (MQ=60)
                  ACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTG                                                                            >  SRR4302537.4484686/1‑94 (MQ=60)
                   CATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGG                                                                           <  SRR4302537.5019463/94‑1 (MQ=60)
                     TGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCTGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCT                                                                         <  SRR4302537.434913/94‑1 (MQ=60)
                     TGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCT                                                                         <  SRR4302537.858120/94‑1 (MQ=60)
                       GTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGA                                                                       >  SRR4302537.302855/1‑94 (MQ=60)
                        TGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGAT                                                                      >  SRR4302537.5203164/1‑94 (MQ=60)
                         GGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATG                                                                     <  SRR4302537.488091/94‑1 (MQ=60)
                           CACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGT                                                                   >  SRR4302537.788572/1‑94 (MQ=60)
                            ACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTC                                                                  <  SRR4302537.5816145/94‑1 (MQ=60)
                            ACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTC                                                                  <  SRR4302537.1405160/94‑1 (MQ=60)
                               ATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCC                                                               >  SRR4302537.1202800/1‑94 (MQ=60)
                               ATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCC                                                               >  SRR4302537.237329/1‑94 (MQ=60)
                                TGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCC                                                              >  SRR4302537.328687/1‑94 (MQ=60)
                                 GCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCA                                                             >  SRR4302537.6386076/1‑94 (MQ=60)
                                  CTATGCGAGTCCGCGTCTGCAACCGGGCGACGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCTCTGGCTGATGATCGCCCAA                                                            >  SRR4302537.2239418/1‑94 (MQ=60)
                                   TATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCACC                                                           >  SRR4302537.4517691/1‑94 (MQ=60)
                                   TATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAAC                                                           <  SRR4302537.6104301/94‑1 (MQ=60)
                                    ATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACA                                                          >  SRR4302537.3256519/1‑94 (MQ=60)
                                    ATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACA                                                          >  SRR4302537.5335459/1‑94 (MQ=60)
                                      GCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAC                                                        >  SRR4302537.63355/1‑94 (MQ=60)
                                      GCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAA                                                        <  SRR4302537.1131528/94‑1 (MQ=60)
                                       CGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAAC                                                       >  SRR4302537.5205377/1‑94 (MQ=60)
                                        GCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCGCAACAAACT                                                      >  SRR4302537.2587501/1‑94 (MQ=60)
                                         CGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTG                                                     <  SRR4302537.215976/94‑1 (MQ=60)
                                          GTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGG                                                    <  SRR4302537.5751710/94‑1 (MQ=60)
                                           TCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGA                                                   <  SRR4302537.3242584/94‑1 (MQ=60)
                                           TCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGA                                                   <  SRR4302537.411810/94‑1 (MQ=60)
                                           GCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGA                                                   <  SRR4302537.2590970/94‑1 (MQ=60)
                                             CGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGC                                                 >  SRR4302537.4552579/1‑94 (MQ=60)
                                             CGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGC                                                 >  SRR4302537.3122145/1‑94 (MQ=60)
                                              GCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCC                                                >  SRR4302537.2024247/1‑94 (MQ=60)
                                              GCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCC                                                <  SRR4302537.1712233/94‑1 (MQ=60)
                                               CGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCA                                               >  SRR4302537.1650694/1‑94 (MQ=60)
                                                GTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAA                                              <  SRR4302537.215499/94‑1 (MQ=60)
                                                  CTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCTCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAG                                            <  SRR4302537.4629778/94‑1 (MQ=60)
                                                  CTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAG                                            <  SRR4302537.5467774/94‑1 (MQ=60)
                                                   TGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGT                                           <  SRR4302537.3532714/94‑1 (MQ=60)
                                                   TGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGT                                           <  SRR4302537.613516/94‑1 (MQ=60)
                                                    GCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTG                                          <  SRR4302537.3244251/94‑1 (MQ=60)
                                                     CAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGG                                         <  SRR4302537.683779/94‑1 (MQ=60)
                                                     CAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGG                                         >  SRR4302537.1332612/1‑94 (MQ=60)
                                                      AACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGG                                        >  SRR4302537.1900492/1‑94 (MQ=60)
                                                        CCGGGCGATGAGATTATTGTCAGCGTGGCAGGACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGGGGTGA                                      >  SRR4302537.4797533/1‑94 (MQ=60)
                                                        CCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGA                                      <  SRR4302537.6468271/94‑1 (MQ=60)
                                                        CCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGA                                      >  SRR4302537.4424208/1‑94 (MQ=60)
                                                        CCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGA                                      <  SRR4302537.4879240/94‑1 (MQ=60)
                                                          GGGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAA                                    <  SRR4302537.6183137/94‑1 (MQ=60)
                                                           GGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAAT                                   >  SRR4302537.1916704/1‑94 (MQ=60)
                                                           GGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAAT                                   <  SRR4302537.225178/94‑1 (MQ=60)
                                                           GGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAAT                                   <  SRR4302537.3817583/94‑1 (MQ=60)
                                                           GGCGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAAT                                   <  SRR4302537.2852675/94‑1 (MQ=60)
                                                             CGATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTG                                 <  SRR4302537.3336387/94‑1 (MQ=60)
                                                               ATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCC                               <  SRR4302537.1582174/94‑1 (MQ=60)
                                                               ATGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCATCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCC                               <  SRR4302537.6286743/94‑1 (MQ=60)
                                                                TGAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCG                              <  SRR4302537.520600/94‑1 (MQ=60)
                                                                 GAGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGC                             >  SRR4302537.2658934/1‑94 (MQ=60)
                                                                  AGATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCT                            <  SRR4302537.5465707/94‑1 (MQ=60)
                                                                   GATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTT                           >  SRR4302537.5712793/1‑94 (MQ=60)
                                                                   GATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTT                           <  SRR4302537.5644506/94‑1 (MQ=60)
                                                                    ATTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTA                          <  SRR4302537.291178/94‑1 (MQ=60)
                                                                     TTATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAA                         <  SRR4302537.6479518/94‑1 (MQ=60)
                                                                      TATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAAT                        >  SRR4302537.865895/1‑94 (MQ=60)
                                                                       tttggCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATG                       <  SRR4302537.2473794/89‑1 (MQ=60)
                                                                       ATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATG                       >  SRR4302537.1700821/1‑94 (MQ=60)
                                                                       ATTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATG                       >  SRR4302537.644502/1‑94 (MQ=60)
                                                                       ATAGTCAGCGTGGCAGAGAACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGGGCCAAGGTGGTGAATTTGCCGCTTAATG                       <  SRR4302537.6511251/94‑1 (MQ=60)
                                                                        TTGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGC                      <  SRR4302537.3758962/94‑1 (MQ=60)
                                                                         TGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCG                     <  SRR4302537.4438070/94‑1 (MQ=60)
                                                                         TGTCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCG                     >  SRR4302537.2549369/1‑94 (MQ=60)
                                                                           TCAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCA                   <  SRR4302537.240810/94‑1 (MQ=60)
                                                                            CAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAG                  >  SRR4302537.2082298/1‑94 (MQ=60)
                                                                            CAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAG                  >  SRR4302537.3427454/1‑94 (MQ=60)
                                                                            CAGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAG                  <  SRR4302537.4387900/94‑1 (MQ=60)
                                                                             AGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGC                 >  SRR4302537.5908709/1‑94 (MQ=60)
                                                                             AGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGC                 <  SRR4302537.1173319/94‑1 (MQ=60)
                                                                             AGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGC                 <  SRR4302537.2663480/94‑1 (MQ=60)
                                                                             AGCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAAC                 >  SRR4302537.5398818/1‑94 (MQ=60)
                                                                              GCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCG                <  SRR4302537.6399908/94‑1 (MQ=60)
                                                                              GCGTGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCG                <  SRR4302537.2882910/94‑1 (MQ=60)
                                                                                 TGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACT             <  SRR4302537.5706597/94‑1 (MQ=60)
                                                                                 TGGCAGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACT             <  SRR4302537.5625755/94‑1 (MQ=60)
                                                                                     AGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCG         >  SRR4302537.6268956/1‑94 (MQ=60)
                                                                                     AGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCG         >  SRR4302537.4901809/1‑94 (MQ=60)
                                                                                     AGAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCA         >  SRR4302537.6249180/1‑94 (MQ=60)
                                                                                      GAACACTGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGG        >  SRR4302537.5787684/1‑94 (MQ=60)
                                                                                      GAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGG        <  SRR4302537.2411200/94‑1 (MQ=60)
                                                                                      GAACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGG        >  SRR4302537.2370420/1‑94 (MQ=60)
                                                                                       AACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGA       >  SRR4302537.3616633/1‑94 (MQ=60)
                                                                                       AACACCGCGCCAACCTCGTCCCCTGGCTGATGGCCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGA       >  SRR4302537.4376955/1‑94 (MQ=60)
                                                                                        ACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGAT      <  SRR4302537.3741287/94‑1 (MQ=60)
                                                                                        ACACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGAT      >  SRR4302537.1345351/1‑94 (MQ=60)
                                                                                         CACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGATG     >  SRR4302537.2378058/1‑94 (MQ=60)
                                                                                          ACCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGATGT    <  SRR4302537.3504715/94‑1 (MQ=60)
                                                                                           CCGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGATGTC   <  SRR4302537.307446/94‑1 (MQ=60)
                                                                                            CGCGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGATGTCG  <  SRR4302537.6492149/94‑1 (MQ=60)
                                                                                             |                                                                                            
GCACCACTGAATCCATCAACATGGTGGCACAATGCTATGCGCGTCCGCGTCTGCAACCGGGCGATGAGATTATTGTCAGCGTGGCAGAACACCACGCCAACCTCGTCCCCTGGCTGATGGTCGCCCAACAAACTGGAGCCAAAGTGGTGAAATTGCCGCTTAATGCGCAGCGACTGCCGGATGTCG  >  NC_000913/2941624‑2941809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑