Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,166,935 2 bp→CG coding (312‑313/483 nt) b3023 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,166,9350GC100.0% 772.4 / NA 222L105V (CTT→GTT) b3023hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (110/112);  total (110/112)
*NC_0009133,166,9360CG100.0% 779.8 / NA 222Q104H (CAG→CAC) b3023hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (110/112);  total (110/112)

Only 100 of 228 total aligned reads displayed.

GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCC  >  NC_000913/3166848‑3167022
                                                                                       ||                                                                                      
  gCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATCTCGTCCAGCTCGCCAACGTGGCgg                                                                                  <  2:4043543/93‑1 (MQ=255)
   cTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGCAATATCGTCCAGCTCGCCAACGTGGCggg                                                                                 >  1:2617603/1‑93 (MQ=255)
   cTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCggg                                                                                 >  2:1863522/1‑93 (MQ=255)
   cTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCggg                                                                                 <  2:1647781/93‑1 (MQ=255)
    tttACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGc                                                                                >  2:3834997/1‑93 (MQ=255)
    tttACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGc                                                                                <  2:6146034/93‑1 (MQ=255)
      tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCa                                                                              >  1:3583188/1‑93 (MQ=255)
      tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCa                                                                              >  1:1317134/1‑93 (MQ=255)
      tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCa                                                                              <  1:6389143/93‑1 (MQ=255)
       aCGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCAc                                                                             <  1:5775282/93‑1 (MQ=255)
         gCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACgg                                                                           <  1:4615871/93‑1 (MQ=255)
          cATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGc                                                                          >  2:5397545/1‑93 (MQ=255)
           aTTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGGCACGGCa                                                                         >  1:3315255/1‑93 (MQ=255)
            ttttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCAt                                                                        <  1:700981/93‑1 (MQ=255)
             tttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATa                                                                       <  2:2302720/93‑1 (MQ=255)
             tttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATa                                                                       <  1:140146/93‑1 (MQ=255)
              ttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATaa                                                                      >  2:1797590/1‑93 (MQ=255)
              ttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCACATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATaa                                                                      >  2:6071953/1‑93 (MQ=255)
               tctcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAc                                                                     >  1:1907484/1‑93 (MQ=255)
                cccgccgcGTGCCGGCAGCCAGTGGCGAATGATGCCGCATACCGTGTGGGAAATATCGGCCAGCCCGGCAATGTGGCGGGCCACGGGCTAACg                                                                    <  2:4968622/91‑1 (MQ=255)
                 tcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGTCCGGCCACGGCATAACGt                                                                   >  2:3716645/1‑93 (MQ=255)
                  cgccgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTc                                                                  <  1:3674658/93‑1 (MQ=255)
                  cgccgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTc                                                                  >  1:3780705/1‑93 (MQ=255)
                   gccgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTcc                                                                 <  2:2862382/93‑1 (MQ=255)
                   gccgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGACATAACGTcc                                                                 <  2:603302/93‑1 (MQ=255)
                    ccgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCa                                                                <  2:4881536/93‑1 (MQ=255)
                     cgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAc                                                               >  1:3265825/1‑93 (MQ=255)
                     cgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAc                                                               >  1:3048/1‑93 (MQ=255)
                     cgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAc                                                               >  2:3787671/1‑93 (MQ=255)
                      gcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAcc                                                              >  2:4130315/1‑93 (MQ=255)
                        ttGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCgg                                                            <  2:1163415/93‑1 (MQ=255)
                          gcaggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTa                                                          >  1:4789698/1‑93 (MQ=255)
                          gcaggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTa                                                          >  2:4196298/1‑93 (MQ=255)
                           caggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTaa                                                         <  2:3498217/93‑1 (MQ=255)
                            aggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCCGCTCCCGATCCTGGCGGGCCACGGCATCACTCCCACCgggagt                                                        >  2:430872/1‑89 (MQ=255)
                             ggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGt                                                       <  2:5773276/93‑1 (MQ=255)
                             ggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGt                                                       <  2:1346498/93‑1 (MQ=255)
                             ggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGt                                                       <  2:2538442/93‑1 (MQ=255)
                                agCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCa                                                    <  2:4699722/93‑1 (MQ=255)
                                 gCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAc                                                   >  1:1992783/1‑93 (MQ=255)
                                   cAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCa                                                 <  2:2242579/93‑1 (MQ=255)
                                   cAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCa                                                 <  1:1946194/93‑1 (MQ=255)
                                    aGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCAt                                                <  1:2084090/93‑1 (MQ=255)
                                    aGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGGAAGTTCACCAt                                                >  2:5579513/1‑93 (MQ=255)
                                     gTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCAtt                                               >  2:1589833/1‑93 (MQ=255)
                                      tGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTg                                              <  2:3911168/93‑1 (MQ=255)
                                      tGGCGAATGATGCCCCATACCGGTTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTg                                              <  1:6276809/93‑1 (MQ=255)
                                       ggCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGc                                             <  2:4319671/93‑1 (MQ=255)
                                        gCGAATGATGCACCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCt                                            <  2:594157/93‑1 (MQ=255)
                                         cGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTc                                           <  1:3146970/93‑1 (MQ=255)
                                          gAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTca                                          >  1:286560/1‑93 (MQ=255)
                                          gAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTca                                          <  2:2725309/93‑1 (MQ=255)
                                          gAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTca                                          >  1:2424859/1‑93 (MQ=255)
                                           aaTGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTcac                                         >  1:2388974/1‑93 (MQ=255)
                                            atgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTcaca                                        <  1:2343822/93‑1 (MQ=255)
                                             tgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCCGTAAGTTCACCATTGCTCacac                                       >  2:3159881/1‑93 (MQ=255)
                                                tgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGGAAGTTCACCATTGCTCACACCAt                                    >  2:357435/1‑93 (MQ=255)
                                                 gCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATa                                   >  1:6020908/1‑93 (MQ=255)
                                                  ccccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATaa                                  <  1:1130816/93‑1 (MQ=255)
                                                   cccATACCGTGTGTGAAATATCGTCCGGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAc                                 <  1:4392116/93‑1 (MQ=255)
                                                   cccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAc                                 <  2:1051206/93‑1 (MQ=255)
                                                    ccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACg                                >  2:1494176/1‑93 (MQ=255)
                                                    ccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACg                                <  2:728759/93‑1 (MQ=255)
                                                    ccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACg                                >  1:772246/1‑93 (MQ=255)
                                                    ccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACg                                >  2:4487414/1‑93 (MQ=255)
                                                      aTACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGTCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAt                              >  1:1802043/1‑93 (MQ=255)
                                                      aTACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAt                              >  2:6173643/1‑93 (MQ=255)
                                                         ccGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTTACCATTGCTCACACCATAACGATTAt                           >  2:4777289/1‑93 (MQ=255)
                                                         ccGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAt                           >  2:1609993/1‑93 (MQ=255)
                                                         ccGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAt                           >  1:2704774/1‑93 (MQ=255)
                                                          cGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATc                          <  2:852282/93‑1 (MQ=255)
                                                           gtgtgtGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCg                         >  1:1596798/1‑93 (MQ=255)
                                                           gtgtgtGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCg                         <  1:4316748/93‑1 (MQ=255)
                                                            tgtgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCgg                        <  1:468503/93‑1 (MQ=255)
                                                             gtgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCggg                       <  1:5662745/93‑1 (MQ=255)
                                                              tgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGa                      >  2:2087880/1‑93 (MQ=255)
                                                               gtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGaa                     <  2:1327367/93‑1 (MQ=255)
                                                                  aaaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCg                  >  2:5414158/1‑93 (MQ=255)
                                                                   aaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCgg                 <  2:4153243/93‑1 (MQ=255)
                                                                   aaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCgg                 <  1:6447710/93‑1 (MQ=255)
                                                                    atatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGCGAATCGGt                >  1:1695060/1‑93 (MQ=255)
                                                                     tatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGtt               <  1:5192965/93‑1 (MQ=255)
                                                                      atCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc              <  1:5005274/93‑1 (MQ=255)
                                                                      atCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc              >  1:5963727/1‑93 (MQ=255)
                                                                       tCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCg             >  2:2222297/1‑93 (MQ=255)
                                                                       tCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCg             >  2:456016/1‑93 (MQ=255)
                                                                        cGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGc            <  1:6100238/93‑1 (MQ=255)
                                                                        cGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGc            <  1:4094309/93‑1 (MQ=255)
                                                                           ccAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTaa         <  1:4484581/93‑1 (MQ=255)
                                                                           ccAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTaa         >  2:5058893/1‑93 (MQ=255)
                                                                           ccAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTaa         <  1:5440835/93‑1 (MQ=255)
                                                                              gCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGc      >  1:6071713/1‑93 (MQ=255)
                                                                              gCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGc      >  2:781869/1‑93 (MQ=255)
                                                                               cTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCt     <  1:5126018/93‑1 (MQ=255)
                                                                                tCGCCAACGTGGCGGGCCACGGCATAACGTCCAACGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTg    >  1:851293/1‑93 (MQ=255)
                                                                                 cGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGc   <  1:1028423/93‑1 (MQ=255)
                                                                                  gCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACCCCATAACGACTATCGGGAATCGGTTCGCTAACGCTGcc  <  2:3668929/93‑1 (MQ=255)
                                                                                  gCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGcc  <  1:2512465/93‑1 (MQ=255)
                                                                                  gCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGcc  <  1:524778/93‑1 (MQ=255)
                                                                                  gCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAGTATCGGGAATCGGTTCGCTAACGCTGcc  >  1:5537492/1‑93 (MQ=255)
                                                                                       ||                                                                                      
GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCC  >  NC_000913/3166848‑3167022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAATCGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCG  >  NC_000913/3166842‑3167023
                                                                                             |                                                                                        
GAATCGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCCGCTCGCCAAC                                                                                          >  SRR4302537.4743746/1‑94 (MQ=60)
GAATCGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAC                                                                                          <  SRR4302537.3073080/94‑1 (MQ=60)
      GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCG                                                                                    <  SRR4302537.5711299/94‑1 (MQ=60)
      GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCG                                                                                    <  SRR4302537.1232132/94‑1 (MQ=60)
      GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCG                                                                                    >  SRR4302537.587491/1‑94 (MQ=60)
       TGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTTGCCAACGTGGCGG                                                                                   >  SRR4302537.4321808/1‑94 (MQ=60)
        GCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGCAATATCGTCCAGCTCGCCAACGTGGCGGG                                                                                  >  SRR4302537.2635906/1‑94 (MQ=60)
           TTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCA                                                                               >  SRR4302537.3608444/1‑94 (MQ=60)
           TTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCA                                                                               >  SRR4302537.1326314/1‑94 (MQ=60)
            TACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCAC                                                                              <  SRR4302537.6432678/94‑1 (MQ=60)
             ACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACG                                                                             <  SRR4302537.5814867/94‑1 (MQ=60)
               GCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGC                                                                           <  SRR4302537.4647838/94‑1 (MQ=60)
                CATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGGCACGGCA                                                                          >  SRR4302537.3338707/1‑94 (MQ=60)
                 ATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCAT                                                                         >  SRR4302537.366060/1‑94 (MQ=60)
                 ATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCAT                                                                         <  SRR4302537.6392617/94‑1 (MQ=60)
                 ATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCAT                                                                         >  SRR4302537.3269172/1‑94 (MQ=60)
                  TTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATA                                                                        <  SRR4302537.705777/94‑1 (MQ=60)
                  TTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATA                                                                        <  SRR4302537.5470227/94‑1 (MQ=60)
                   TTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAA                                                                       <  SRR4302537.141145/94‑1 (MQ=60)
                    TTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAC                                                                      <  SRR4302537.703377/94‑1 (MQ=60)
                    TTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAC                                                                      >  SRR4302537.1920732/1‑94 (MQ=60)
                    TTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAC                                                                      <  SRR4302537.6131747/94‑1 (MQ=60)
                      CTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGT                                                                    >  SRR4302537.5755901/1‑94 (MQ=60)
                      CTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGT                                                                    >  SRR4302537.3473842/1‑94 (MQ=60)
                       TCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTC                                                                   >  SRR4302537.3807257/1‑94 (MQ=60)
                        CGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCC                                                                  <  SRR4302537.3700506/94‑1 (MQ=60)
                        CGCCGCTGGCACGCGGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCC                                                                  <  SRR4302537.2751544/94‑1 (MQ=60)
                         GCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCA                                                                 <  SRR4302537.1195665/94‑1 (MQ=60)
                          CCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAC                                                                >  SRR4302537.3288859/1‑94 (MQ=60)
                          CCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAC                                                                >  SRR4302537.3070/1‑94 (MQ=60)
                            GCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCACAACGTCCACCG                                                              >  SRR4302537.5063600/1‑94 (MQ=60)
                              TTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGT                                                            <  SRR4302537.5645615/94‑1 (MQ=60)
                               TGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTA                                                           >  SRR4302537.4822756/1‑94 (MQ=60)
                                  AGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGT                                                        <  SRR4302537.4380633/94‑1 (MQ=60)
                                   GGCAGCCAGTGGCGAATGATGCCCCATCCCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTT                                                       <  SRR4302537.1035568/94‑1 (MQ=60)
                                   GGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTT                                                       <  SRR4302537.5512360/94‑1 (MQ=60)
                                    GCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTC                                                      <  SRR4302537.3573328/94‑1 (MQ=60)
                                    GCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGCTC                                                      >  SRR4302537.1875816/1‑94 (MQ=60)
                                      AGCCAGTGGCGAATGATGGCCCATACCGTGTATGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAC                                                    <  SRR4302537.2027415/94‑1 (MQ=60)
                                      AGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATCACGTCCACCGGTAAGTTCAC                                                    >  SRR4302537.949603/1‑94 (MQ=60)
                                      AGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAC                                                    >  SRR4302537.2006640/1‑94 (MQ=60)
                                        CCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCA                                                  >  SRR4302537.1958235/1‑94 (MQ=60)
                                         CAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCAT                                                 <  SRR4302537.5113244/94‑1 (MQ=60)
                                         CAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCAT                                                 <  SRR4302537.1959724/94‑1 (MQ=60)
                                          AGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCTAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATT                                                >  SRR4302537.4707472/1‑94 (MQ=60)
                                          AGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATT                                                <  SRR4302537.1449331/94‑1 (MQ=60)
                                          AGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATT                                                <  SRR4302537.2098775/94‑1 (MQ=60)
                                          AGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATT                                                <  SRR4302537.220011/94‑1 (MQ=60)
                                           GTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTG                                               <  SRR4302537.5180628/94‑1 (MQ=60)
                                            TGGCGAATGATGCCCCATACCGGTTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGC                                              <  SRR4302537.6319872/94‑1 (MQ=60)
                                             GGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCT                                             <  SRR4302537.3727636/94‑1 (MQ=60)
                                              GCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTC                                            >  SRR4302537.4426273/1‑94 (MQ=60)
                                              GCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTC                                            >  SRR4302537.246280/1‑94 (MQ=60)
                                               CGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCA                                           >  SRR4302537.288555/1‑94 (MQ=60)
                                               CGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCA                                           <  SRR4302537.3061562/94‑1 (MQ=60)
                                               CGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCA                                           >  SRR4302537.2647151/1‑94 (MQ=60)
                                               CGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCA                                           <  SRR4302537.3169047/94‑1 (MQ=60)
                                               CGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCA                                           >  SRR4302537.2441947/1‑94 (MQ=60)
                                                GAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCAC                                          >  SRR4302537.2405798/1‑94 (MQ=60)
                                                GAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCAC                                          >  SRR4302537.2560428/1‑94 (MQ=60)
                                                  ATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACAC                                        <  SRR4302537.2360328/94‑1 (MQ=60)
                                                      TGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATA                                    >  SRR4302537.6062273/1‑94 (MQ=60)
                                                        CCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAC                                  <  SRR4302537.1138662/94‑1 (MQ=60)
                                                        CCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAC                                  <  SRR4302537.1793359/94‑1 (MQ=60)
                                                        CCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAC                                  <  SRR4302537.4623360/94‑1 (MQ=60)
                                                         CCCATACCGTGTGTGAAATATCGTCCGGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACG                                 <  SRR4302537.4422420/94‑1 (MQ=60)
                                                         CCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACG                                 >  SRR4302537.777537/1‑94 (MQ=60)
                                                         CCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACG                                 <  SRR4302537.5359564/94‑1 (MQ=60)
                                                         CCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACG                                 >  SRR4302537.3329103/1‑94 (MQ=60)
                                                         CCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACG                                 <  SRR4302537.2422509/94‑1 (MQ=60)
                                                           CATCCCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAT                               <  SRR4302537.6131881/94‑1 (MQ=60)
                                                           CATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGTCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAT                               >  SRR4302537.1814617/1‑94 (MQ=60)
                                                           CATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAT                               >  SRR4302537.5269132/1‑94 (MQ=60)
                                                            ATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATT                              >  SRR4302537.3114648/1‑94 (MQ=60)
                                                             TACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTA                             <  SRR4302537.1935320/94‑1 (MQ=60)
                                                             TACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTA                             >  SRR4302537.6022224/1‑94 (MQ=60)
                                                              ACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAT                            >  SRR4302537.2723655/1‑94 (MQ=60)
                                                              ACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAT                            <  SRR4302537.6245969/94‑1 (MQ=60)
                                                                CGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCG                          >  SRR4302537.1607954/1‑94 (MQ=60)
                                                                 GTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGG                         <  SRR4302537.4346758/94‑1 (MQ=60)
                                                                 GTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGAATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGG                         <  SRR4302537.813160/94‑1 (MQ=60)
                                                                  TGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCTGG                        >  SRR4302537.3815975/1‑94 (MQ=60)
                                                                  TGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGG                        >  SRR4302537.6445915/1‑94 (MQ=60)
                                                                  TGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGG                        <  SRR4302537.471718/94‑1 (MQ=60)
                                                                   GTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGA                       <  SRR4302537.5701492/94‑1 (MQ=60)
                                                                     GTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAAT                     <  SRR4302537.3830689/94‑1 (MQ=60)
                                                                       GAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCG                   >  SRR4302537.4726028/1‑94 (MQ=60)
                                                                         AATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGT                 <  SRR4302537.6491443/94‑1 (MQ=60)
                                                                         AATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGCGAATCGGT                 >  SRR4302537.1706918/1‑94 (MQ=60)
                                                                           TATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTC               >  SRR4302537.6004661/1‑94 (MQ=60)
                                                                           TATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTC               <  SRR4302537.5228674/94‑1 (MQ=60)
                                                                            ATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCG              >  SRR4302537.2385641/1‑94 (MQ=60)
                                                                            ATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCG              <  SRR4302537.680951/94‑1 (MQ=60)
                                                                            ATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCG              >  SRR4302537.1655425/1‑94 (MQ=60)
                                                                            ATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCG              <  SRR4302537.5039745/94‑1 (MQ=60)
                                                                              CGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCT            <  SRR4302537.4122904/94‑1 (MQ=60)
                                                                              CGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCT            <  SRR4302537.6142154/94‑1 (MQ=60)
                                                                              CGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACAATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCT            >  SRR4302537.1483322/1‑94 (MQ=60)
                                                                               GTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTA           >  SRR4302537.716953/1‑94 (MQ=60)
                                                                               GTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTA           >  SRR4302537.1327756/1‑94 (MQ=60)
                                                                               GTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTA           >  SRR4302537.2561600/1‑94 (MQ=60)
                                                                               GTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTA           <  SRR4302537.6085646/94‑1 (MQ=60)
                                                                                TCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAA          >  SRR4302537.1978614/1‑94 (MQ=60)
                                                                                 CCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAC         <  SRR4302537.5477948/94‑1 (MQ=60)
                                                                                 CCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAC         <  SRR4302537.4515605/94‑1 (MQ=60)
                                                                                 CCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTACACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAC         <  SRR4302537.4957435/94‑1 (MQ=60)
                                                                                   AGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGTAATCGGTTCGCTAACGC       >  SRR4302537.2966486/1‑94 (MQ=60)
                                                                                   AGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGC       >  SRR4302537.6113435/1‑94 (MQ=60)
                                                                                     CTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTG     <  SRR4302537.5161341/94‑1 (MQ=60)
                                                                                     CTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTG     >  SRR4302537.2257122/1‑94 (MQ=60)
                                                                                     CTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTG     >  SRR4302537.4534564/1‑94 (MQ=60)
                                                                                     CTCGCCAACGTGGCGGGCCACGGCATAACGTCCAACGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTG     >  SRR4302537.857128/1‑94 (MQ=60)
                                                                                      TCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGC    <  SRR4302537.5915650/94‑1 (MQ=60)
                                                                                       CGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCC   <  SRR4302537.1035505/94‑1 (MQ=60)
                                                                                       CGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCC   >  SRR4302537.1108298/1‑94 (MQ=60)
                                                                                       CGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCC   >  SRR4302537.1184758/1‑94 (MQ=60)
                                                                                       CGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAGTATCGGGAATCGGTTCGCTAACGCTGCC   >  SRR4302537.5575292/1‑94 (MQ=60)
                                                                                        GCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCG  <  SRR4302537.2530129/94‑1 (MQ=60)
                                                                                        GCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCG  <  SRR4302537.528380/94‑1 (MQ=60)
                                                                                             |                                                                                        
GAATCGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCG  >  NC_000913/3166842‑3167023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑