Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,175,745 |
A→G |
V61A (GTC→GCC) |
yqiE ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,175,745 | 0 | A | G | 99.5%
| 624.7
/ ‑4.7
| 188 | V61A (GTC→GCC) | yqiE | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (95/92); total (96/92) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.99e-01 |
Only 100 of 208 total aligned reads displayed.
AGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCT > NC_000913/3175655‑3175834
|
aGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCt > 1:3679749/1‑93 (MQ=255)
aGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCt > 2:1781452/1‑93 (MQ=255)
gCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTg > 1:5007276/1‑93 (MQ=255)
ccAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTgc > 1:3795390/1‑93 (MQ=255)
ccAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTgc < 1:5647886/93‑1 (MQ=255)
cAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTgcg > 1:1479142/1‑93 (MQ=255)
cAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTgcg < 2:17704/93‑1 (MQ=255)
cAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTgcg > 1:4846213/1‑93 (MQ=255)
aaGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGAAAGGCTgcgg > 2:1678390/1‑93 (MQ=255)
aGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTgcggc > 2:479282/1‑93 (MQ=255)
gTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGa > 1:4643020/1‑93 (MQ=255)
tttCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGAc > 2:456389/1‑93 (MQ=255)
tttCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGAc < 2:4179656/93‑1 (MQ=255)
tttCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGAc > 2:3062166/1‑93 (MQ=255)
cTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCgcgc < 1:5475920/93‑1 (MQ=255)
ggTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTc > 2:4956335/1‑93 (MQ=255)
tgtCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCaa > 1:742088/1‑93 (MQ=255)
tCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCaaaa > 2:5123005/1‑93 (MQ=255)
gTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAAt > 1:3229331/1‑93 (MQ=255)
tACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAAtt > 2:4452868/1‑93 (MQ=255)
tACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAAtt < 2:135125/93‑1 (MQ=255)
gcgGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTcc > 2:3927403/1‑93 (MQ=255)
gcgGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTcc > 2:3595953/1‑93 (MQ=255)
gcgGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTcc > 2:6355851/1‑93 (MQ=255)
ggCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGTCCGCGCTCAAAAATTTCccg > 2:1341238/1‑93 (MQ=255)
ggCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCccg < 1:1747181/93‑1 (MQ=255)
gCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCccgc > 2:1690092/1‑93 (MQ=255)
cAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCccgcc > 2:4879074/1‑93 (MQ=255)
aTCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCcgccgc > 1:928686/1‑93 (MQ=255)
aTCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCcgccgc > 1:2379087/1‑93 (MQ=255)
tCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCa < 2:701872/93‑1 (MQ=255)
tCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCa < 1:1870438/93‑1 (MQ=255)
cGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCAcc < 2:2824543/93‑1 (MQ=255)
aaTCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTc > 2:5904442/1‑93 (MQ=255)
aaTCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTc > 2:114152/1‑93 (MQ=255)
aTCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCa > 2:5238970/1‑93 (MQ=255)
aTCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCa > 2:2462920/1‑93 (MQ=255)
tCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCAt > 2:2285252/1‑93 (MQ=255)
tCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCAt > 2:4385170/1‑93 (MQ=255)
cTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACt < 1:3040000/93‑1 (MQ=255)
cTCAATCAGCACAACTTCATCACGCACTGGGCCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACt > 1:4404996/1‑93 (MQ=255)
tCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTc < 2:2030457/93‑1 (MQ=255)
aaTCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCAt < 2:4325476/93‑1 (MQ=255)
aaTCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCAt < 2:1069432/93‑1 (MQ=255)
aTCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCAtt < 1:277770/93‑1 (MQ=255)
aTCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCAtt < 2:475927/93‑1 (MQ=255)
aTCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCAtt > 2:2973948/1‑93 (MQ=255)
aTCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCAtt < 1:1779517/93‑1 (MQ=255)
tCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCAttt > 2:569070/1‑93 (MQ=255)
gCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGcc < 1:6189997/93‑1 (MQ=255)
gCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGcc > 2:5290500/1‑93 (MQ=255)
cacaACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCCCACCTCATGACTCATTTGccc > 2:5343612/1‑93 (MQ=255)
cacaACTCCACCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGccc < 2:139051/93‑1 (MQ=255)
acaACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCg < 2:2855963/93‑1 (MQ=255)
acaACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCg > 2:1581759/1‑93 (MQ=255)
acaACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCg > 2:2423554/1‑93 (MQ=255)
aaCTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGtt > 2:2362869/1‑93 (MQ=255)
cTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGa < 1:1984/93‑1 (MQ=255)
cTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGa > 1:5948303/1‑93 (MQ=255)
cTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGa > 2:4451147/1‑93 (MQ=255)
tcatcaCGTACTGGGTCAAAGGTTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAAt < 2:3178158/93‑1 (MQ=255)
tcatcaCGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAAt > 1:3621581/1‑93 (MQ=255)
tcatcaCGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAAt < 1:4807484/93‑1 (MQ=255)
tcatcaCGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAAt < 1:4973214/93‑1 (MQ=255)
catcaCGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATa < 2:5828154/93‑1 (MQ=255)
atcaCGCACTGGGTCAAAGGGTAGCAGGGCTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAg < 2:333509/93‑1 (MQ=255)
atcaCGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAg < 1:5986479/93‑1 (MQ=255)
tcaCGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGa < 1:4003855/93‑1 (MQ=255)
tcaCGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGa < 2:2687586/93‑1 (MQ=255)
tcaCGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGa > 1:4953659/1‑93 (MQ=255)
caCGCACTGGGTCAAAGGGAAGCAGGGCGGCGGCGTGCCCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCAGTTGCCCGTTGAATAGAc < 1:1572862/93‑1 (MQ=255)
gCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGAt > 1:2954534/1‑93 (MQ=255)
cACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATg > 1:3339528/1‑93 (MQ=255)
cACTGGGTCAAAGGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATg > 1:5734734/1‑93 (MQ=255)
aCTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGa < 1:5904340/93‑1 (MQ=255)
aCTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGa > 1:544478/1‑93 (MQ=255)
cTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGAc < 1:1092886/93‑1 (MQ=255)
gggTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGa < 1:2220960/93‑1 (MQ=255)
gggTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGa < 2:781008/93‑1 (MQ=255)
gtgcAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGaa < 1:2577492/90‑1 (MQ=255)
tCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAAt < 1:4509762/93‑1 (MQ=255)
tCAAAGGGTAGCAAGGCGGCGGCGTCACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTAATTTGCCCGTTGAATAGACGATGACGAAAt < 2:1121274/93‑1 (MQ=255)
cAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATc < 2:5943894/93‑1 (MQ=255)
aggggTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCta < 1:2257441/91‑1 (MQ=255)
aatggTAGCAGGGCTGCGGCCTGACCTCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTCGCCCGTTGAATAGACGATGACGAAATCta < 1:6026996/90‑1 (MQ=255)
aaGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCta > 1:1639726/1‑93 (MQ=255)
aGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGATGAAATCtat < 1:5893822/93‑1 (MQ=255)
aGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCtat < 1:3404891/93‑1 (MQ=255)
gggTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCtata < 1:3257326/93‑1 (MQ=255)
gggTAGCAAGCCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCtata < 2:2917337/93‑1 (MQ=255)
ggTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATaa > 1:4360824/1‑93 (MQ=255)
gTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATaaa < 1:2177448/93‑1 (MQ=255)
tAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAg < 1:1243686/93‑1 (MQ=255)
aGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGa > 1:5502832/1‑93 (MQ=255)
aGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGa < 1:4689141/93‑1 (MQ=255)
aGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGa < 2:6012579/93‑1 (MQ=255)
gCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGAt < 2:5383505/93‑1 (MQ=255)
gCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGAt > 1:6364451/1‑93 (MQ=255)
gCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGAt > 2:4828621/1‑93 (MQ=255)
aaGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCt > 2:1233761/1‑93 (MQ=255)
|
AGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCT > NC_000913/3175655‑3175834
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATG > NC_000913/3175652‑3175838
|
AGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGG > SRR4302537.199436/1‑94 (MQ=60)
AGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGG < SRR4302537.5287599/94‑1 (MQ=60)
TAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCT > SRR4302537.3705640/1‑94 (MQ=60)
TAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCT < SRR4302537.5734301/94‑1 (MQ=60)
GAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCT < SRR4302537.3387897/94‑1 (MQ=60)
AGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTG > SRR4302537.5041765/1‑94 (MQ=60)
AGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTG < SRR4302537.707546/94‑1 (MQ=60)
GCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGC < SRR4302537.4916022/94‑1 (MQ=60)
GCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGC > SRR4302537.3822022/1‑94 (MQ=60)
CCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCG > SRR4302537.4879657/1‑94 (MQ=60)
CCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCG > SRR4302537.1489430/1‑94 (MQ=60)
CCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCG < SRR4302537.5686542/94‑1 (MQ=60)
AAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGA > SRR4302537.5491471/1‑94 (MQ=60)
GGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGA > SRR4302537.4675126/1‑94 (MQ=60)
CGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCG > SRR4302537.4181349/1‑94 (MQ=60)
GCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGC > SRR4302537.4447767/1‑94 (MQ=60)
CTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCT < SRR4302537.5513300/94‑1 (MQ=60)
TGGTGTGGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTC > SRR4302537.2647973/1‑94 (MQ=60)
GTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAA > SRR4302537.747153/1‑94 (MQ=60)
CGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAAT < SRR4302537.3695047/94‑1 (MQ=60)
CGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAAT > SRR4302537.3252091/1‑94 (MQ=60)
GTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATT < SRR4302537.3029851/94‑1 (MQ=60)
GTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATT > SRR4302537.4782471/1‑94 (MQ=60)
GTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATT > SRR4302537.6000804/1‑94 (MQ=60)
CGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACTCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCG < SRR4302537.2274133/94‑1 (MQ=60)
GGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGC < SRR4302537.179420/94‑1 (MQ=60)
GGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGC < SRR4302537.1759370/94‑1 (MQ=60)
CAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACAGCGCTCAAAAATTTCCCGCCG > SRR4302537.2819081/1‑94 (MQ=60)
AATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGC > SRR4302537.935090/1‑94 (MQ=60)
AATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGC > SRR4302537.2395849/1‑94 (MQ=60)
TCCGAATTTCCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCAC < SRR4302537.4990370/94‑1 (MQ=60)
TCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCAC > SRR4302537.1127414/1‑94 (MQ=60)
TCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCAC < SRR4302537.1883454/94‑1 (MQ=60)
GAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGCGACCGCGCTCAAAAATTTCCCGCCGCACCTC > SRR4302537.4854046/1‑94 (MQ=60)
TCNGNNNNATCAGCACAACNTNNNCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATG < SRR4302537.5740301/94‑1 (MQ=60)
TGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGAC > SRR4302537.5599382/1‑94 (MQ=60)
GCTCAATCAGCACAACTTCATCACGCACTGGGCCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACT > SRR4302537.4435391/1‑94 (MQ=60)
CTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTC < SRR4302537.3061183/94‑1 (MQ=60)
TCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCGCATGACTCA > SRR4302537.3303154/1‑94 (MQ=60)
AATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATT < SRR4302537.5938331/94‑1 (MQ=60)
ATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTT < SRR4302537.1791920/94‑1 (MQ=60)
ATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTT < SRR4302537.279711/94‑1 (MQ=60)
ATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTT < SRR4302537.4107678/94‑1 (MQ=60)
TCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTG < SRR4302537.5957389/94‑1 (MQ=60)
GCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCC < SRR4302537.6232642/94‑1 (MQ=60)
CACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCG < SRR4302537.223142/94‑1 (MQ=60)
ACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGT > SRR4302537.3270287/1‑94 (MQ=60)
CAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTT > SRR4302537.4642989/1‑94 (MQ=60)
ACTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGA > SRR4302537.5989132/1‑94 (MQ=60)
CTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAA > SRR4302537.2272334/1‑94 (MQ=60)
CTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAA < SRR4302537.5034898/94‑1 (MQ=60)
CTTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAA < SRR4302537.1997/94‑1 (MQ=60)
TTCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAAT > SRR4302537.3647103/1‑94 (MQ=60)
TCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATA < SRR4302537.4840639/94‑1 (MQ=60)
TCATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATA < SRR4302537.5007491/94‑1 (MQ=60)
CATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAG < SRR4302537.926718/94‑1 (MQ=60)
CATCACGCACTGGGTCAAAGGGTAGCAAGGCCGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAG > SRR4302537.1508713/1‑94 (MQ=60)
ATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGA < SRR4302537.6027562/94‑1 (MQ=60)
ATCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGA > SRR4302537.4987817/1‑94 (MQ=60)
TCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGAC < SRR4302537.4031880/94‑1 (MQ=60)
TCACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGAC > SRR4302537.580737/1‑94 (MQ=60)
CACGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACG > SRR4302537.1789118/1‑94 (MQ=60)
CACGCACTGGGTCAAAGGGAAGCAGGGCGGCGGCGTGCCCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCAGTTGCCCGTTGAATAGACG < SRR4302537.1583836/94‑1 (MQ=60)
CGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGAT < SRR4302537.1897234/94‑1 (MQ=60)
CGCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGAT > SRR4302537.2975267/1‑94 (MQ=60)
GCACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATG > SRR4302537.3363167/1‑94 (MQ=60)
GCACTGGGTCAAAGGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATG > SRR4302537.5773998/1‑94 (MQ=60)
CACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGA > SRR4302537.548222/1‑94 (MQ=60)
ACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGAC > SRR4302537.2447767/1‑94 (MQ=60)
ACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGAC > SRR4302537.2471147/1‑94 (MQ=60)
ACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGAC < SRR4302537.563536/94‑1 (MQ=60)
ACTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGAC < SRR4302537.5944855/94‑1 (MQ=60)
CTGGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACG < SRR4302537.1100432/94‑1 (MQ=60)
CGGGTCAAAGGTTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGA < SRR4302537.5763440/94‑1 (MQ=60)
GGGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAA < SRR4302537.2236610/94‑1 (MQ=60)
gtgCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAA < SRR4302537.2595536/91‑1 (MQ=60)
GGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAA < SRR4302537.6075650/94‑1 (MQ=60)
GGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAA > SRR4302537.3175619/1‑94 (MQ=60)
GGTCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAA < SRR4302537.5158313/94‑1 (MQ=60)
TCAAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATC < SRR4302537.4540944/94‑1 (MQ=60)
AAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTA > SRR4302537.5523964/1‑94 (MQ=60)
AAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTA > SRR4302537.1651213/1‑94 (MQ=60)
AAAGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTA > SRR4302537.6044226/1‑94 (MQ=60)
AGGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTAT < SRR4302537.2273372/94‑1 (MQ=60)
AATGGTAGCAGGGCTGCGGCCTGACCTCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTCGCCCGTTGAATAGACGATGACGAAATCTAT < SRR4302537.6068409/94‑1 (MQ=60)
AAGGGTAGCAAGCCTGCGGCATGACCGTGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTAT < SRR4302537.4024296/94‑1 (MQ=60)
AGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGATGAAATCTATA < SRR4302537.5934263/94‑1 (MQ=60)
AGGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATA < SRR4302537.3429006/94‑1 (MQ=60)
GGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAA > SRR4302537.4390998/1‑94 (MQ=60)
GGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAA > SRR4302537.4390999/1‑94 (MQ=60)
GGGTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAA < SRR4302537.3280294/94‑1 (MQ=60)
GGGTAGCAAGGCTGCGGCGTGACAGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAA > SRR4302537.3729565/1‑94 (MQ=60)
GGGTAGCAAGCCTGCGGCGCGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAA < SRR4302537.2044476/94‑1 (MQ=60)
GTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAG < SRR4302537.2192796/94‑1 (MQ=60)
GTAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAG < SRR4302537.6294272/94‑1 (MQ=60)
TAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGA < SRR4302537.1252351/94‑1 (MQ=60)
TAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGA > SRR4302537.5540407/1‑94 (MQ=60)
GAGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGA < SRR4302537.991788/94‑1 (MQ=60)
AGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGAT < SRR4302537.4721576/94‑1 (MQ=60)
AGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGAT > SRR4302537.6407864/1‑94 (MQ=60)
AGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGAT < SRR4302537.1324555/94‑1 (MQ=60)
AGCAAGGCTGCGGCGTGACCGCGCTCAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGAT < SRR4302537.4675211/94‑1 (MQ=60)
GCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATC < SRR4302537.343208/94‑1 (MQ=60)
GCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATC > SRR4302537.3426224/1‑94 (MQ=60)
GCAAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATC < SRR4302537.1742676/94‑1 (MQ=60)
AAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTA > SRR4302537.5907760/1‑94 (MQ=60)
AAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTA > SRR4302537.1778815/1‑94 (MQ=60)
AAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTA > SRR4302537.6515584/1‑94 (MQ=60)
AAGGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTA < SRR4302537.1584515/94‑1 (MQ=60)
GGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAAT < SRR4302537.5367169/94‑1 (MQ=60)
GGCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAAT > SRR4302537.1680584/1‑94 (MQ=60)
GCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATG < SRR4302537.1019845/94‑1 (MQ=60)
GCTGCGCCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATG < SRR4302537.4111774/94‑1 (MQ=60)
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AGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATG > NC_000913/3175652‑3175838
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
