Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,111,822	T→C	P77P (CCA→CCG)	fpr ←	ferredoxin‑NADP reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,111,822	0	T	C	100.0%	852.0 / NA	245	P77P (CCA→CCG)	fpr	ferredoxin‑NADP reductase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (130/115); total (130/115)

Only 100 of 249 total aligned reads displayed.

TTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGAC  >  NC_000913/4111732‑4111911

ttCGCAGTGCGGCCCTTCACCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCgg                                                                                         <  1:3936369/93‑1 (MQ=255)

ttCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCgg                                                                                         >  2:3147770/1‑93 (MQ=255)

    cAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCtt                                                                                     >  1:264432/1‑93 (MQ=255)

    cAGGGCGGCACTTCATCGAGCAAAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCtt                                                                                     <  2:860100/93‑1 (MQ=255)

     aGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTa                                                                                    >  2:3545606/1‑93 (MQ=255)

     aGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTa                                                                                    >  1:6271185/1‑93 (MQ=255)

      gTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTaa                                                                                   >  1:4177340/1‑93 (MQ=255)

      gTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTaa                                                                                   >  2:2405531/1‑93 (MQ=255)

      gTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTaa                                                                                   <  1:6189114/93‑1 (MQ=255)

         cGGCACTTCATCGAGCACAAAGAACCCTGCCGCTTCGCTAACCACCTGCACTTCAGCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAAttt                                                                                <  1:3721765/93‑1 (MQ=255)

          ggCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTg                                                                               <  1:1606528/93‑1 (MQ=255)

          ggCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTg                                                                               <  2:1634312/93‑1 (MQ=255)

          ggCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTg                                                                               >  1:2569020/1‑93 (MQ=255)

          ggCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCCGGCTTAATTTg                                                                               >  1:1909142/1‑93 (MQ=255)

           gCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGc                                                                              <  2:6426662/93‑1 (MQ=255)

           gCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGc                                                                              <  1:4099270/93‑1 (MQ=255)

           gCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGc                                                                              >  1:760095/1‑93 (MQ=255)

             aCTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCa                                                                            <  2:2160199/93‑1 (MQ=255)

              cTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCAt                                                                           >  2:3116497/1‑93 (MQ=255)

               ttCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATc                                                                          >  1:3492038/1‑93 (MQ=255)

               ttCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATc                                                                          <  1:4464518/93‑1 (MQ=255)

               ttCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATc                                                                          >  2:4263026/1‑93 (MQ=255)

                tCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCg                                                                         <  2:609982/93‑1 (MQ=255)

                 cATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCgg                                                                        >  2:5190720/1‑93 (MQ=255)

                  aTCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCggg                                                                       <  1:5922184/93‑1 (MQ=255)

                  aTCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCggg                                                                       <  1:5853713/93‑1 (MQ=255)

                     gAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGAc                                                                    <  2:1494757/93‑1 (MQ=255)

                     gAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGAc                                                                    <  1:2421762/93‑1 (MQ=255)

                       gCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACgg                                                                  >  1:6295158/1‑93 (MQ=255)

                       gCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACgg                                                                  <  1:5173878/93‑1 (MQ=255)

                        cacaAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGt                                                                 <  1:165623/93‑1 (MQ=255)

                         acaAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACgggg                                                                >  2:356495/1‑91 (MQ=255)

                          caAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCACCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGa                                                               >  2:4970260/1‑93 (MQ=255)

                          caAAGAATCCTGCCGCTTCCCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGa                                                               <  2:3923404/93‑1 (MQ=255)

                           aaaGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGAc                                                              <  1:1128922/93‑1 (MQ=255)

                            aaGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGAcc                                                             <  1:5225200/93‑1 (MQ=255)

                            aaGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGCGAcc                                                             >  1:6076690/1‑93 (MQ=255)

                               aaTCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAgg                                                          >  2:5647157/1‑93 (MQ=255)

                                aTCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGt                                                         >  1:1419584/1‑93 (MQ=255)

                                aTCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGt                                                         >  1:1928930/1‑93 (MQ=255)

                                 tCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTa                                                        >  1:2972127/1‑93 (MQ=255)

                                 tCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTa                                                        >  2:5484907/1‑93 (MQ=255)

                                    tGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTaaaa                                                     <  1:2069870/93‑1 (MQ=255)

                                     gCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAAc                                                    <  1:2449714/93‑1 (MQ=255)

                                       cGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTc                                                  >  2:29037/1‑93 (MQ=255)

                                        gCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTcc                                                 <  1:2310616/93‑1 (MQ=255)

                                         cTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCa                                                >  2:6045484/1‑93 (MQ=255)

                                         cTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCa                                                >  1:3331500/1‑93 (MQ=255)

                                           tCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGa                                              <  2:3909602/93‑1 (MQ=255)

                                              cTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCg                                           >  1:3646502/1‑93 (MQ=255)

                                               tAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCgg                                          <  1:1057814/93‑1 (MQ=255)

                                               tAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCgg                                          <  1:1186490/93‑1 (MQ=255)

                                                    cccTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTa                                     <  1:1703338/92‑1 (MQ=255)

                                                    accTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTa                                     >  2:2622404/1‑93 (MQ=255)

                                                    accTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTa                                     >  2:138727/1‑93 (MQ=255)

                                                     ccTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTAt                                    >  2:1453289/1‑93 (MQ=255)

                                                     ccTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTAt                                    >  2:6192598/1‑93 (MQ=255)

                                                       tGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCTAGATCGGGATTATCg                                  <  1:6387876/93‑1 (MQ=255)

                                                       cgCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCg                                  <  2:1866264/92‑1 (MQ=255)

                                                         cACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCggg                                <  2:4552454/93‑1 (MQ=255)

                                                         cACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCggg                                <  1:176342/93‑1 (MQ=255)

                                                          aCTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCATGTAAAACTCCAGATCGGGATTATCGGGc                               <  1:4885361/93‑1 (MQ=255)

                                                          aCTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGc                               >  1:4666243/1‑93 (MQ=255)

                                                             tCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAg                            <  1:6357199/93‑1 (MQ=255)

                                                               aTCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGtt                          >  1:55756/1‑93 (MQ=255)

                                                               aTCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGtt                          >  2:67504/1‑93 (MQ=255)

                                                                tCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGttt                         >  2:2208927/1‑93 (MQ=255)

                                                                  gCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGGTTATCGGGCGAGTTTAc                       >  2:2385456/1‑93 (MQ=255)

                                                                  gCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTAc                       >  2:1094508/1‑93 (MQ=255)

                                                                   ccTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACa                      <  2:6126713/93‑1 (MQ=255)

                                                                    cTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACAt                     <  2:1695262/93‑1 (MQ=255)

                                                                    cTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACAt                     >  2:750430/1‑93 (MQ=255)

                                                                    cTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACAt                     <  1:3540059/93‑1 (MQ=255)

                                                                    cTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACAt                     <  1:3822075/93‑1 (MQ=255)

                                                                     tGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATa                    <  2:4785334/93‑1 (MQ=255)

                                                                      ggTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAg                   >  2:2054964/1‑93 (MQ=255)

                                                                      ggTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAg                   >  2:5931538/1‑93 (MQ=255)

                                                                       gTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGGCGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAgg                  >  2:1165942/1‑93 (MQ=255)

                                                                       gTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAgg                  >  2:1369228/1‑93 (MQ=255)

                                                                        tttCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGa                 <  2:3380076/93‑1 (MQ=255)

                                                                           cAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTa              <  2:6058602/93‑1 (MQ=255)

                                                                           cAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTa              <  1:3865840/93‑1 (MQ=255)

                                                                           cAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTa              <  2:4208892/93‑1 (MQ=255)

                                                                            aGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAg             <  1:3248519/93‑1 (MQ=255)

                                                                             gTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAgg            >  1:2055033/1‑93 (MQ=255)

                                                                             gTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGCAgg            >  2:5290182/1‑93 (MQ=255)

                                                                              tGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGgc           >  1:1541216/1‑93 (MQ=255)

                                                                              tGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGgc           <  2:3271607/93‑1 (MQ=255)

                                                                               gccgccAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGgcg          <  1:4808124/93‑1 (MQ=255)

                                                                               gccgccAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGgcg          <  1:1474830/93‑1 (MQ=255)

                                                                                ccgccAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGgcgc         <  2:2794652/93‑1 (MQ=255)

                                                                                 cgccAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGgcgcg        >  2:3689275/1‑93 (MQ=255)

                                                                                 cgccAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGgcgcg        >  2:2582402/1‑93 (MQ=255)

                                                                                 cgccAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATC‑GGCGAGTTTACATTGGAGTAGgcgggc       >  1:2289527/1‑93 (MQ=255)

                                                                                   ccAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGgcgcgcg      >  1:1973348/1‑92 (MQ=255)

                                                                                    cAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTg     <  1:5501957/93‑1 (MQ=255)

                                                                                    cAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGCTTACATAGGAGTAGGCGCGCTg     >  2:380779/1‑93 (MQ=255)

                                                                                    cAGTCGCGGGCTTAATTTGCCATCGGCGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAATTTACATAGGAGTAGGCGCGCTg     <  2:5218380/93‑1 (MQ=255)

                                                                                       tCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGAc  <  1:4936080/93‑1 (MQ=255)

                                                                                       tCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGAc  >  1:3133219/1‑93 (MQ=255)

TTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGAC  >  NC_000913/4111732‑4111911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGT  >  NC_000913/4111729‑4111915

CGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGC                                                                                               >  SRR4302537.3379437/1‑94 (MQ=60)

  TTTCGCAGTGCGGCCCTTCATCGGGCAGAAAGAATCCTGCCGCTTCGCTAACCGCCTGCCCTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGG                                                                                             <  SRR4302537.624254/94‑1 (MQ=60)

  TTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGG                                                                                             >  SRR4302537.5812631/1‑94 (MQ=60)

  TTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGG                                                                                             >  SRR4302537.6380829/1‑94 (MQ=60)

   TTCGCAGTGCGGCCCTTCACCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGG                                                                                            <  SRR4302537.3963881/94‑1 (MQ=60)

      GCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTT                                                                                         <  SRR4302537.5547997/94‑1 (MQ=60)

      GCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTT                                                                                         >  SRR4302537.266290/1‑94 (MQ=60)

       CAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTA                                                                                        >  SRR4302537.6314224/1‑94 (MQ=60)

        AGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAA                                                                                       >  SRR4302537.4206503/1‑94 (MQ=60)

         GTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAAT                                                                                      <  SRR4302537.6231753/94‑1 (MQ=60)

          TGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATT                                                                                     >  SRR4302537.3190803/1‑94 (MQ=60)

           GCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTT                                                                                    <  SRR4302537.2444175/94‑1 (MQ=60)

            CGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTG                                                                                   <  SRR4302537.2657861/94‑1 (MQ=60)

            CGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTG                                                                                   >  SRR4302537.2587017/1‑94 (MQ=60)

            CGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCCGGCTTAATTTG                                                                                   >  SRR4302537.1922396/1‑94 (MQ=60)

            CGGCACTTCATCGAGCACAAAGAACCCTGCCGCTTCGCTAACCACCTGCACTTCAGCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTG                                                                                   <  SRR4302537.3747914/94‑1 (MQ=60)

             GGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGC                                                                                  <  SRR4302537.1617762/94‑1 (MQ=60)

             GGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGC                                                                                  >  SRR4302537.765289/1‑94 (MQ=60)

              GCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCC                                                                                 <  SRR4302537.4127887/94‑1 (MQ=60)

               CACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCA                                                                                >  SRR4302537.6235280/1‑94 (MQ=60)

                CCTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCAT                                                                               <  SRR4302537.5070798/94‑1 (MQ=60)

                ACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTACTTTGCCAT                                                                               >  SRR4302537.1341073/1‑94 (MQ=60)

                 CTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATC                                                                              >  SRR4302537.3516738/1‑94 (MQ=60)

                  TTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCG                                                                             <  SRR4302537.3827001/94‑1 (MQ=60)

                  TTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCG                                                                             <  SRR4302537.4495394/94‑1 (MQ=60)

                   TCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGG                                                                            >  SRR4302537.3421856/1‑94 (MQ=60)

                     ATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGG                                                                          >  SRR4302537.3918985/1‑94 (MQ=60)

                     ATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGG                                                                          <  SRR4302537.5893870/94‑1 (MQ=60)

                     ATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGG                                                                          <  SRR4302537.5962819/94‑1 (MQ=60)

                     ATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGG                                                                          <  SRR4302537.1514327/94‑1 (MQ=60)

                        GAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACG                                                                       <  SRR4302537.2438824/94‑1 (MQ=60)

                         AGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGG                                                                      >  SRR4302537.6338284/1‑94 (MQ=60)

                          GCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGT                                                                     <  SRR4302537.5209492/94‑1 (MQ=60)

                           CACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTG                                                                    >  SRR4302537.5036614/1‑94 (MQ=60)

                           CACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTG                                                                    <  SRR4302537.6098957/94‑1 (MQ=60)

                           CACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTG                                                                    <  SRR4302537.2872177/94‑1 (MQ=60)

                           CACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTG                                                                    <  SRR4302537.166807/94‑1 (MQ=60)

                           CACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTG                                                                    >  SRR4302537.6381374/1‑94 (MQ=60)

                             CAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGAC                                                                  >  SRR4302537.6282600/1‑94 (MQ=60)

                             CAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGAC                                                                  <  SRR4302537.1717727/94‑1 (MQ=60)

                              AAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACC                                                                 <  SRR4302537.1136753/94‑1 (MQ=60)

                              AAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACC                                                                 >  SRR4302537.1902732/1‑94 (MQ=60)

                              AAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGCGACC                                                                 >  SRR4302537.6118445/1‑94 (MQ=60)

                               AAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCA                                                                <  SRR4302537.5261133/94‑1 (MQ=60)

                               AAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCA                                                                >  SRR4302537.2320013/1‑94 (MQ=60)

                               AAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCA                                                                >  SRR4302537.3015155/1‑94 (MQ=60)

                                AGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAG                                                               >  SRR4302537.130117/1‑94 (MQ=60)

                                 GAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGG                                                              <  SRR4302537.4913948/94‑1 (MQ=60)

                                  AATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGT                                                             >  SRR4302537.1655843/1‑94 (MQ=60)

                                  AATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGT                                                             >  SRR4302537.1942317/1‑94 (MQ=60)

                                  AATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGT                                                             >  SRR4302537.1429462/1‑94 (MQ=60)

                                   ATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTA                                                            >  SRR4302537.2992952/1‑94 (MQ=60)

                                     CCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGGCGGTGACCAGGTAAA                                                          >  SRR4302537.1137985/1‑94 (MQ=60)

                                     CCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAA                                                          >  SRR4302537.4204782/1‑94 (MQ=60)

                                     CCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAA                                                          >  SRR4302537.5236858/1‑94 (MQ=60)

                                       TGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAAC                                                        <  SRR4302537.2084412/94‑1 (MQ=60)

                                        GCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACT                                                       <  SRR4302537.2466947/94‑1 (MQ=60)

                                         CCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTC                                                      >  SRR4302537.5996141/1‑94 (MQ=60)

                                           GCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCA                                                    >  SRR4302537.3355071/1‑94 (MQ=60)

                                           GCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCA                                                    <  SRR4302537.2326926/94‑1 (MQ=60)

                                            CTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAG                                                   <  SRR4302537.6326061/94‑1 (MQ=60)

                                            CTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAG                                                   >  SRR4302537.1929047/1‑94 (MQ=60)

                                              TCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGAT                                                 <  SRR4302537.2544125/94‑1 (MQ=60)

                                                GCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCG                                               >  SRR4302537.3672170/1‑94 (MQ=60)

                                                 CTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGG                                              >  SRR4302537.2078192/1‑94 (MQ=60)

                                                  TAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGG                                             <  SRR4302537.1194733/94‑1 (MQ=60)

                                                  TAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGG                                             <  SRR4302537.1065108/94‑1 (MQ=60)

                                                   AACCCCCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGA                                            <  SRR4302537.1580561/94‑1 (MQ=60)

                                                   AACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTACAGATCGGGA                                            >  SRR4302537.2344950/1‑94 (MQ=60)

                                                     CCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATT                                          <  SRR4302537.1522755/94‑1 (MQ=60)

                                                      CACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTA                                         <  SRR4302537.46030/94‑1 (MQ=60)

                                                       CCCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTAT                                        <  SRR4302537.1715245/94‑1 (MQ=60)

                                                       ACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTAT                                        <  SRR4302537.1996614/94‑1 (MQ=60)

                                                       ACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTAT                                        >  SRR4302537.4033822/1‑94 (MQ=60)

                                                        CCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATC                                       <  SRR4302537.3390374/94‑1 (MQ=60)

                                                        CCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATC                                       <  SRR4302537.4142672/94‑1 (MQ=60)

                                                          TGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCTAGATCGGGATTATCGG                                     <  SRR4302537.6431404/94‑1 (MQ=60)

                                                          TGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGG                                     >  SRR4302537.3724754/1‑94 (MQ=60)

                                                          TGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGG                                     <  SRR4302537.385721/94‑1 (MQ=60)

                                                          TGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGG                                     <  SRR4302537.2209990/94‑1 (MQ=60)

                                                            CACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGC                                   >  SRR4302537.4698526/1‑94 (MQ=60)

                                                            CACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGC                                   <  SRR4302537.177591/94‑1 (MQ=60)

                                                            CACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGC                                   <  SRR4302537.3940600/94‑1 (MQ=60)

                                                            CACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGC                                   >  SRR4302537.1649140/1‑94 (MQ=60)

                                                             ACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCATGTAAAACTCCAGATCGGGATTATCGGGCG                                  <  SRR4302537.4919098/94‑1 (MQ=60)

                                                             ACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCG                                  >  SRR4302537.4556224/1‑94 (MQ=60)

                                                                TCATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGT                               <  SRR4302537.6400587/94‑1 (MQ=60)

                                                                 CATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTT                              >  SRR4302537.3299692/1‑94 (MQ=60)

                                                                 CATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTT                              >  SRR4302537.56170/1‑94 (MQ=60)

                                                                 CATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTT                              <  SRR4302537.5889426/94‑1 (MQ=60)

                                                                  ATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTT                             <  SRR4302537.3164357/94‑1 (MQ=60)

                                                                  ATCGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTT                             <  SRR4302537.171874/94‑1 (MQ=60)

                                                                    CGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTAC                           >  SRR4302537.715295/1‑94 (MQ=60)

                                                                    CGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTAC                           <  SRR4302537.2155189/94‑1 (MQ=60)

                                                                    CGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTAC                           <  SRR4302537.1955638/94‑1 (MQ=60)

                                                                    CGCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTAC                           >  SRR4302537.5927836/1‑94 (MQ=60)

                                                                     GCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACA                          >  SRR4302537.1089263/1‑94 (MQ=60)

                                                                     GCCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACA                          <  SRR4302537.4422315/94‑1 (MQ=60)

                                                                      CCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACAT                         <  SRR4302537.3554513/94‑1 (MQ=60)

                                                                      CCTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACAT                         >  SRR4302537.3661336/1‑94 (MQ=60)

                                                                       CTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATA                        <  SRR4302537.3565061/94‑1 (MQ=60)

                                                                       CTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATA                        >  SRR4302537.4760371/1‑94 (MQ=60)

                                                                       CTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATA                        <  SRR4302537.3848873/94‑1 (MQ=60)

                                                                       CTGGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATA                        >  SRR4302537.1675809/1‑94 (MQ=60)

                                                                         GGTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGG                      >  SRR4302537.2396352/1‑94 (MQ=60)

                                                                          GTTTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGA                     >  SRR4302537.4933944/1‑94 (MQ=60)

                                                                          GTTTCAGGTCCGGCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGA                     <  SRR4302537.3788252/94‑1 (MQ=60)

                                                                            TTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGT                   <  SRR4302537.1446405/94‑1 (MQ=60)

                                                                            TTCAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGT                   >  SRR4302537.5522488/1‑94 (MQ=60)

                                                                              CAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAG                 >  SRR4302537.193789/1‑94 (MQ=60)

                                                                              CAGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAG                 <  SRR4302537.3892895/94‑1 (MQ=60)

                                                                               AGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGG                >  SRR4302537.2069452/1‑94 (MQ=60)

                                                                               AGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGG                <  SRR4302537.2937731/94‑1 (MQ=60)

                                                                               AGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGG                >  SRR4302537.3573885/1‑94 (MQ=60)

                                                                               AGTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGG                <  SRR4302537.3271416/94‑1 (MQ=60)

                                                                                GTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGC               <  SRR4302537.961300/94‑1 (MQ=60)

                                                                                GTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGC               <  SRR4302537.2557214/94‑1 (MQ=60)

                                                                                GTGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGC               >  SRR4302537.1551974/1‑94 (MQ=60)

                                                                                 TGCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACGCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCG              <  SRR4302537.6421511/94‑1 (MQ=60)

                                                                                  GCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGC             <  SRR4302537.4841311/94‑1 (MQ=60)

                                                                                  GCCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGC             <  SRR4302537.1485078/94‑1 (MQ=60)

                                                                                   CCGCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATC‑GGCGAGTTTACATTGGAGTAGGCGGGC           >  SRR4302537.2305693/1‑94 (MQ=60)

                                                                                     GCCAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCG          >  SRR4302537.1987065/1‑94 (MQ=60)

                                                                                       CAGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGG        <  SRR4302537.5539526/94‑1 (MQ=60)

                                                                                        AGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGA       >  SRR4302537.6191977/1‑94 (MQ=60)

                                                                                        AGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGA       >  SRR4302537.2013593/1‑94 (MQ=60)

                                                                                        AGTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGA       <  SRR4302537.4848241/94‑1 (MQ=60)

                                                                                         GTCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGAC      >  SRR4302537.3155204/1‑94 (MQ=60)

                                                                                          TCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACG     <  SRR4302537.4970124/94‑1 (MQ=60)

                                                                                          TCGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACG     <  SRR4302537.5499699/94‑1 (MQ=60)

                                                                                           CGCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGC    <  SRR4302537.4953318/94‑1 (MQ=60)

                                                                                            GCGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCG   >  SRR4302537.4051646/1‑94 (MQ=60)

                                                                                             CGGGCTTAATTTGCCATCGGGGGCGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGT  >  SRR4302537.1858308/1‑94 (MQ=60)

CGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGT  >  NC_000913/4111729‑4111915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`