Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,175,949 +G intergenic (+82/‑76) nusG → / → rplK NusG/50S ribosomal subunit protein L11

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,175,9471.G98.4% 831.9 / 4.4 242intergenic (+80/‑78)nusG/rplKNusG/50S ribosomal subunit protein L11
Reads supporting (aligned to +/- strand):  ref base . (2/2);  new base G (124/114);  total (126/116)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01

Only 100 of 265 total aligned reads displayed.

TGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA  >  NC_000913/4175855‑4176034
                                                                                              |                                                                                        
tGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAt                                                                                           <  2:3896502/93‑1 (MQ=255)
tGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAt                                                                                           <  1:6235170/93‑1 (MQ=255)
 gAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATg                                                                                         >  2:3961470/1‑93 (MQ=255)
 gAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATg                                                                                         >  1:2208759/1‑93 (MQ=255)
 gAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATg                                                                                         <  1:4644516/93‑1 (MQ=255)
  aaaaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATgg                                                                                        >  1:3380067/1‑93 (MQ=255)
   aaaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATggg                                                                                       >  1:1249916/1‑92 (MQ=255)
    aaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATgggc                                                                                      >  1:3550743/1‑91 (MQ=255)
     aaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATgggcc                                                                                     <  2:2554714/93‑4 (MQ=255)
     aaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATgggcc                                                                                     >  2:1980706/1‑90 (MQ=255)
     aaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATgggcc                                                                                     <  1:4315002/93‑4 (MQ=255)
      aGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATgggcct                                                                                    <  2:6154222/93‑5 (MQ=255)
          tAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGcc                                                                                >  2:4514737/1‑93 (MQ=255)
           aaCCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGccc                                                                               >  2:140815/1‑93 (MQ=255)
           aaCCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGccc                                                                               >  1:6226588/1‑93 (MQ=255)
               cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaa                                                                           <  2:2807920/93‑1 (MQ=255)
               cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaa                                                                           >  2:5727257/1‑93 (MQ=255)
                aGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaaa                                                                          <  2:921981/93‑1 (MQ=255)
                 gCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaaaa                                                                         >  1:5870541/1‑93 (MQ=255)
                 gCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaaaa                                                                         >  2:4187732/1‑93 (MQ=255)
                   gATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACg                                                                       >  1:708793/1‑93 (MQ=255)
                     tCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAt                                                                     <  1:551483/93‑1 (MQ=255)
                     tCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAt                                                                     >  2:4694714/1‑93 (MQ=255)
                     tCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAt                                                                     >  1:3081422/1‑93 (MQ=255)
                      cAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAtt                                                                    <  2:1123660/93‑1 (MQ=255)
                      cAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAtt                                                                    >  2:1661093/1‑93 (MQ=255)
                       aaaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAttt                                                                   <  1:411804/93‑1 (MQ=255)
                           aaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTta                                                               <  2:1782467/93‑1 (MQ=255)
                             gcggcgATTTAATCGTTGTACAAGGCGTGAGATTGGAATACAACTTCGCTCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTtata                                                             <  1:6317741/93‑1 (MQ=255)
                              cggcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTatat                                                            >  2:2178137/1‑93 (MQ=255)
                                gcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCa                                                          >  1:6405098/1‑93 (MQ=255)
                                 cgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCAc                                                         <  1:2388501/93‑1 (MQ=255)
                                  gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACg                                                        >  1:6277203/1‑93 (MQ=255)
                                  gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACg                                                        <  2:3696059/93‑1 (MQ=255)
                                  gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACg                                                        >  1:1067084/1‑93 (MQ=255)
                                   aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACgg                                                       >  2:5741140/1‑93 (MQ=255)
                                   aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACgg                                                       >  2:5347056/1‑93 (MQ=255)
                                    tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACggg                                                      <  1:1679928/93‑1 (MQ=255)
                                    tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACggg                                                      <  1:383551/93‑1 (MQ=255)
                                      tAATCGTTGCACAAGGGGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATTGGCCTTGCCCGTAAAACGAGTTTTTATATCACGGGGa                                                    >  1:6073788/1‑93 (MQ=255)
                                      tAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGa                                                    <  2:2152017/93‑1 (MQ=255)
                                      tAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGa                                                    >  2:384960/1‑93 (MQ=255)
                                      tAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGa                                                    >  1:4564613/1‑93 (MQ=255)
                                       aaTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAg                                                   >  2:2519546/1‑93 (MQ=255)
                                        aTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGc                                                  <  2:4306676/93‑1 (MQ=255)
                                        aTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGc                                                  >  1:3679357/1‑93 (MQ=255)
                                        aTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGc                                                  <  2:3429632/93‑1 (MQ=255)
                                         tCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGcc                                                 >  2:6028534/1‑93 (MQ=255)
                                           gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctc                                               <  2:806125/93‑1 (MQ=255)
                                           gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctc                                               <  1:3004460/93‑1 (MQ=255)
                                            ttGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctct                                              >  2:296669/1‑93 (MQ=255)
                                              gCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCa                                            <  2:2226636/93‑1 (MQ=255)
                                               cacaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCag                                           >  1:4444385/1‑93 (MQ=255)
                                               cacaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCag                                           >  2:4399792/1‑93 (MQ=255)
                                                acaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCaga                                          >  2:3136561/1‑93 (MQ=255)
                                                 caAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCagag                                         >  1:126420/1‑93 (MQ=255)
                                                  aaGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAgg                                        >  1:5434182/1‑93 (MQ=255)
                                                  aaGGCGTGAGATTGGAATACAATTGCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAgg                                        <  1:5843615/93‑1 (MQ=255)
                                                   aGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc                                       >  1:4831484/1‑93 (MQ=255)
                                                    ggCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCg                                      >  2:3823774/1‑93 (MQ=255)
                                                    ggCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCg                                      >  1:2827186/1‑93 (MQ=255)
                                                       gTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGtta                                   <  1:1612319/93‑1 (MQ=255)
                                                        tGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttat                                  >  1:2351413/1‑93 (MQ=255)
                                                        tGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttat                                  >  1:4977222/1‑93 (MQ=255)
                                                         gagaTTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatt                                 <  2:5020622/93‑1 (MQ=255)
                                                          agaTTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatta                                <  1:768879/93‑1 (MQ=255)
                                                          agaTTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTACCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatta                                >  1:3468363/1‑93 (MQ=255)
                                                            aTTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAcc                              <  1:3782971/93‑1 (MQ=255)
                                                              tGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCa                            <  2:976876/93‑1 (MQ=255)
                                                               ggAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCaa                           >  1:2036896/1‑93 (MQ=255)
                                                                gAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAAc                          <  1:2540587/93‑1 (MQ=255)
                                                                 aaTACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCCCGGGGAGCCTCTCAGAGGCGTTATTACCCAACt                         <  1:4896433/93‑1 (MQ=255)
                                                                 aaTACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACt                         <  2:2836992/93‑1 (MQ=255)
                                                                 aaTACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACt                         <  2:5937840/93‑1 (MQ=255)
                                                                 aaTACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACt                         <  1:5543311/93‑1 (MQ=255)
                                                                    aCAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGa                      >  2:3282064/1‑93 (MQ=255)
                                                                     cAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACTATTTTTTATATCACGGGTAGCCTCTCAGAGGCGTGATTACCATACTTGAg                     >  2:4809759/1‑93 (MQ=255)
                                                                      aaTTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAgg                    <  1:1035007/93‑1 (MQ=255)
                                                                      aaTTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAgg                    <  1:5214361/93‑1 (MQ=255)
                                                                        tttCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa                  >  2:2611481/1‑93 (MQ=255)
                                                                        tttCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa                  >  1:2084478/1‑93 (MQ=255)
                                                                        tttCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa                  >  1:5706416/1‑93 (MQ=255)
                                                                         ttCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAATCGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAt                 <  1:3209103/93‑1 (MQ=255)
                                                                          tCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAtt                <  1:6440957/93‑1 (MQ=255)
                                                                          tCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAtt                <  2:3507939/93‑1 (MQ=255)
                                                                           cgcgCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGTCGTTATTACCCAACTTGAGGAAttt               <  2:4558153/93‑1 (MQ=255)
                                                                            gcgcCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTta              >  2:4064527/1‑93 (MQ=255)
                                                                            gcgcCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTta              >  1:2749556/1‑93 (MQ=255)
                                                                             cgcCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTtat             >  2:639438/1‑93 (MQ=255)
                                                                              gcCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTtata            >  1:974286/1‑93 (MQ=255)
                                                                                cTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAt          <  1:634656/93‑1 (MQ=255)
                                                                                cTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAt          >  2:321805/1‑93 (MQ=255)
                                                                                cTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAt          >  2:1284649/1‑93 (MQ=255)
                                                                                 ttttGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATg         <  1:1478297/93‑1 (MQ=255)
                                                                                 ttttGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATg         >  2:5112298/1‑93 (MQ=255)
                                                                                   ttGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGc       >  2:5106648/1‑93 (MQ=255)
                                                                                     gTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTa     >  2:4617574/1‑93 (MQ=255)
                                                                                      tttttATGGTCCTTGCCCGTAAAGCGATTGTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTaa    <  1:4359491/93‑1 (MQ=255)
                                                                                       ttttATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAg   <  1:1861618/93‑1 (MQ=255)
                                                                                        tttATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGa  >  2:1513656/1‑93 (MQ=255)
                                                                                              |                                                                                        
TGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA  >  NC_000913/4175855‑4176034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA  >  NC_000913/4175856‑4176042
                                                                                                |                                                                                              
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG                                                                                                <  SRR4302537.4676634/94‑1 (MQ=60)
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG                                                                                                <  SRR4302537.5757598/94‑1 (MQ=60)
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG                                                                                                >  SRR4302537.3404018/1‑94 (MQ=60)
 AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG                                                                                              <  SRR4302537.108953/94‑1 (MQ=60)
 AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGG                                                                                              >  SRR4302537.1258618/1‑94 (MQ=60)
  AAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGC                                                                                             >  SRR4302537.3575820/1‑94 (MQ=60)
   AAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGgcc                                                                                             >  SRR4302537.3073341/1‑91 (MQ=60)
    AAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCT                                                                                            <  SRR4302537.4344992/94‑1 (MQ=60)
     AGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTT                                                                                           <  SRR4302537.2370359/94‑1 (MQ=60)
      GCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTG                                                                                          <  SRR4302537.3756064/94‑1 (MQ=60)
      GCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTG                                                                                          <  SRR4302537.5092919/94‑1 (MQ=60)
      GCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTG                                                                                          <  SRR4302537.5324568/94‑1 (MQ=60)
       CCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGC                                                                                         <  SRR4302537.6478002/94‑1 (MQ=60)
        CTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCC                                                                                        >  SRR4302537.1264264/1‑94 (MQ=60)
         TAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCC                                                                                       >  SRR4302537.6269436/1‑94 (MQ=60)
            CCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTA                                                                                    >  SRR4302537.3004/1‑94 (MQ=60)
             CCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAA                                                                                   >  SRR4302537.1974310/1‑94 (MQ=60)
              CAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAA                                                                                  >  SRR4302537.2316977/1‑94 (MQ=60)
               AGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAA                                                                                 >  SRR4302537.5910809/1‑94 (MQ=60)
                GCNANNNANANAGCGGCGANTNNNTCGTTGCACAAGGCGTGAGATNGGAATACAATTTCGCGCCTTTTGTTTTTATNGGCCTTGCCCGTAAAAC                                                                                <  SRR4302537.4787773/94‑1 (MQ=60)
                GCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAAC                                                                                >  SRR4302537.4432743/1‑94 (MQ=60)
                GCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAAC                                                                                <  SRR4302537.4383057/94‑1 (MQ=60)
                 CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACG                                                                               <  SRR4302537.4973824/94‑1 (MQ=60)
                 CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACG                                                                               >  SRR4302537.713644/1‑94 (MQ=60)
                 CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACG                                                                               <  SRR4302537.119455/94‑1 (MQ=60)
                   ATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAT                                                                             >  SRR4302537.3102883/1‑94 (MQ=60)
                   ATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAT                                                                             >  SRR4302537.198586/1‑94 (MQ=60)
                    TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATT                                                                            >  SRR4302537.2199399/1‑94 (MQ=60)
                    TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATT                                                                            <  SRR4302537.4637121/94‑1 (MQ=60)
                    TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATT                                                                            <  SRR4302537.3110390/94‑1 (MQ=60)
                    TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATT                                                                            <  SRR4302537.555276/94‑1 (MQ=60)
                      AAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTT                                                                          >  SRR4302537.3896516/1‑94 (MQ=60)
                      AAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTT                                                                          <  SRR4302537.414654/94‑1 (MQ=60)
                      AAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTT                                                                          <  SRR4302537.5259586/94‑1 (MQ=60)
                        AAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTT                                                                        <  SRR4302537.4815649/94‑1 (MQ=60)
                        AAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTT                                                                        >  SRR4302537.5564067/1‑94 (MQ=60)
                          AAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTAT                                                                      <  SRR4302537.2619134/94‑1 (MQ=60)
                          AAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTAT                                                                      <  SRR4302537.1283139/94‑1 (MQ=60)
                           AGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATA                                                                     >  SRR4302537.2159883/1‑94 (MQ=60)
                           AGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATA                                                                     >  SRR4302537.3704970/1‑94 (MQ=60)
                           AGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATA                                                                     <  SRR4302537.720833/94‑1 (MQ=60)
                            GCGGCGATTTAATCGTTGTACAAGGCGTGAGATTGGAATACAACTTCGCTCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATAT                                                                    <  SRR4302537.6360975/94‑1 (MQ=60)
                             CGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATC                                                                   <  SRR4302537.6409811/94‑1 (MQ=60)
                              GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACTATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCA                                                                  >  SRR4302537.6515480/1‑94 (MQ=60)
                              GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCA                                                                  >  SRR4302537.4377114/1‑94 (MQ=60)
                              GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCA                                                                  >  SRR4302537.3970091/1‑94 (MQ=60)
                              GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCA                                                                  >  SRR4302537.6448693/1‑94 (MQ=60)
                               GCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCAC                                                                 <  SRR4302537.3474872/94‑1 (MQ=60)
                                CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACG                                                                <  SRR4302537.2405323/94‑1 (MQ=60)
                                CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACG                                                                >  SRR4302537.1074436/1‑94 (MQ=60)
                                CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACG                                                                >  SRR4302537.6320095/1‑94 (MQ=60)
                                CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACG                                                                >  SRR4302537.6320268/1‑94 (MQ=60)
                                CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACG                                                                <  SRR4302537.1505403/94‑1 (MQ=60)
                                 GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGG                                                               >  SRR4302537.5525561/1‑94 (MQ=60)
                                 GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGG                                                               >  SRR4302537.3664706/1‑94 (MQ=60)
                                 GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGG                                                               >  SRR4302537.935637/1‑94 (MQ=60)
                                 GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGG                                                               >  SRR4302537.4871416/1‑94 (MQ=60)
                                  ATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGG                                                              <  SRR4302537.3234813/94‑1 (MQ=60)
                                   TTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGG                                                             <  SRR4302537.4975586/94‑1 (MQ=60)
                                   TTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGG                                                             <  SRR4302537.1691681/94‑1 (MQ=60)
                                   TTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGG                                                             >  SRR4302537.6236837/1‑94 (MQ=60)
                                   TTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGG                                                             <  SRR4302537.386209/94‑1 (MQ=60)
                                    TTAATCGTTGCACAAGGGGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATTGGCCTTGCCCGTAAAACGAGTTTTTATATCACGGGGA                                                            >  SRR4302537.6115528/1‑94 (MQ=60)
                                    TTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGA                                                            >  SRR4302537.4596210/1‑94 (MQ=60)
                                     TAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAG                                                           >  SRR4302537.3691574/1‑94 (MQ=60)
                                      AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC                                                          >  SRR4302537.1636584/1‑94 (MQ=60)
                                      AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC                                                          >  SRR4302537.6423275/1‑94 (MQ=60)
                                      AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC                                                          >  SRR4302537.3705243/1‑94 (MQ=60)
                                         CGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTC                                                       >  SRR4302537.3755810/1‑94 (MQ=60)
                                          GTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCT                                                      >  SRR4302537.799889/1‑94 (MQ=60)
                                          GTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCT                                                      <  SRR4302537.3025386/94‑1 (MQ=60)
                                             GCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAG                                                   >  SRR4302537.4475081/1‑94 (MQ=60)
                                              CACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGA                                                  >  SRR4302537.5524162/1‑94 (MQ=60)
                                              CACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGA                                                  >  SRR4302537.1510833/1‑94 (MQ=60)
                                               ACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAG                                                 >  SRR4302537.127325/1‑94 (MQ=60)
                                               ACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAG                                                 >  SRR4302537.6325870/1‑94 (MQ=60)
                                               ACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTCTATATCACGGGGAGCCTCTCAGAG                                                 >  SRR4302537.6325869/1‑94 (MQ=60)
                                                CAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGG                                                <  SRR4302537.2271315/94‑1 (MQ=60)
                                                CAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGG                                                >  SRR4302537.5471250/1‑94 (MQ=60)
                                                 AAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGC                                               >  SRR4302537.4864850/1‑94 (MQ=60)
                                                 AAGGCGTGAGATTGGAATACAATTGCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGC                                               <  SRR4302537.5883682/94‑1 (MQ=60)
                                                  AGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCG                                              <  SRR4302537.5845021/94‑1 (MQ=60)
                                                  AGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCG                                              >  SRR4302537.306538/1‑94 (MQ=60)
                                                  AGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCG                                              >  SRR4302537.2846945/1‑94 (MQ=60)
                                                   GGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGT                                             >  SRR4302537.6275259/1‑94 (MQ=60)
                                                      GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTAT                                          >  SRR4302537.2367967/1‑94 (MQ=60)
                                                      GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTAT                                          >  SRR4302537.5011525/1‑94 (MQ=60)
                                                      GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTAT                                          <  SRR4302537.1623586/94‑1 (MQ=60)
                                                      GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTAT                                          <  SRR4302537.6088824/94‑1 (MQ=60)
                                                       TGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATT                                         <  SRR4302537.3840017/94‑1 (MQ=60)
                                                        GAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTA                                        <  SRR4302537.3421832/94‑1 (MQ=60)
                                                        GAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTA                                        <  SRR4302537.2761769/94‑1 (MQ=60)
                                                        GAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTACCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTA                                        >  SRR4302537.3492899/1‑94 (MQ=60)
                                                         AGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAC                                       <  SRR4302537.774151/94‑1 (MQ=60)
                                                          GATTGGAATTCAATCTCGCGCTTTTGGTTTATATGTGCCTTACCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACC                                      <  SRR4302537.5800636/94‑1 (MQ=60)
                                                           ATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCC                                     <  SRR4302537.4166887/94‑1 (MQ=60)
                                                           ATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCC                                     <  SRR4302537.3809531/94‑1 (MQ=60)
                                                             TGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAA                                   >  SRR4302537.2051096/1‑94 (MQ=60)
                                                             TGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAA                                   >  SRR4302537.3549392/1‑94 (MQ=60)
                                                               GAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACT                                 >  SRR4302537.4572506/1‑94 (MQ=60)
                                                               GAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACT                                 <  SRR4302537.1477331/94‑1 (MQ=60)
                                                               GAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACT                                 <  SRR4302537.2558402/94‑1 (MQ=60)
                                                                AATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCCCGGGGAGCCTCTCAGAGGCGTTATTACCCAACTT                                <  SRR4302537.4930236/94‑1 (MQ=60)
                                                                AATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTT                                <  SRR4302537.5581161/94‑1 (MQ=60)
                                                                AATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTT                                <  SRR4302537.2447610/94‑1 (MQ=60)
                                                                 ATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTG                               >  SRR4302537.1835856/1‑94 (MQ=60)
                                                                 ATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTG                               <  SRR4302537.2920424/94‑1 (MQ=60)
                                                                    CAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGG                            <  SRR4302537.5886447/94‑1 (MQ=60)
                                                                     AATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGA                           <  SRR4302537.1042138/94‑1 (MQ=60)
                                                                     AATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGA                           <  SRR4302537.5250214/94‑1 (MQ=60)
                                                                      ATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAA                          >  SRR4302537.2099166/1‑94 (MQ=60)
                                                                      ATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAA                          >  SRR4302537.5745467/1‑94 (MQ=60)
                                                                      ATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAA                          <  SRR4302537.6455043/94‑1 (MQ=60)
                                                                       TTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAT                         <  SRR4302537.2077328/94‑1 (MQ=60)
                                                                        TTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAATCGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT                        <  SRR4302537.3231663/94‑1 (MQ=60)
                                                                        TTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT                        >  SRR4302537.5154863/1‑94 (MQ=60)
                                                                        TTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT                        <  SRR4302537.4642929/94‑1 (MQ=60)
                                                                        TTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT                        >  SRR4302537.6367061/1‑94 (MQ=60)
                                                                        TTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT                        <  SRR4302537.5074440/94‑1 (MQ=60)
                                                                         TCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTT                       <  SRR4302537.6484669/94‑1 (MQ=60)
                                                                         TCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTT                       <  SRR4302537.6229458/94‑1 (MQ=60)
                                                                          CGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTA                      >  SRR4302537.2768738/1‑94 (MQ=60)
                                                                           GCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTAT                     >  SRR4302537.475266/1‑94 (MQ=60)
                                                                            CGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATA                    >  SRR4302537.981003/1‑94 (MQ=60)
                                                                            CGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATA                    <  SRR4302537.6297205/94‑1 (MQ=60)
                                                                              CCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAT                  <  SRR4302537.2777231/94‑1 (MQ=60)
                                                                              CCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAT                  >  SRR4302537.3828333/1‑94 (MQ=60)
                                                                               CTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG                 >  SRR4302537.5627651/1‑94 (MQ=60)
                                                                               CTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG                 <  SRR4302537.638969/94‑1 (MQ=60)
                                                                                TTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGG                <  SRR4302537.5907612/94‑1 (MQ=60)
                                                                                TTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGG                <  SRR4302537.1488575/94‑1 (MQ=60)
                                                                                  TTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCT              <  SRR4302537.2520564/94‑1 (MQ=60)
                                                                                  TTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCT              <  SRR4302537.755970/94‑1 (MQ=60)
                                                                                   TGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTA             <  SRR4302537.1812644/94‑1 (MQ=60)
                                                                                    GTTTTTATTGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAA            >  SRR4302537.1070025/1‑94 (MQ=60)
                                                                                    GTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAA            >  SRR4302537.5579977/1‑94 (MQ=60)
                                                                                    GTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAA            >  SRR4302537.3384563/1‑94 (MQ=60)
                                                                                     TTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAG           <  SRR4302537.4389661/94‑1 (MQ=60)
                                                                                     TTTTTATGGTCCTTGCCCGTAAAGCGATTGTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAG           <  SRR4302537.4389660/94‑1 (MQ=60)
                                                                                      TTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA          <  SRR4302537.1874583/94‑1 (MQ=60)
                                                                                        TTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAA        >  SRR4302537.4226366/1‑94 (MQ=60)
                                                                                        TTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAA        <  SRR4302537.2612823/94‑1 (MQ=60)
                                                                                        TTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAA        <  SRR4302537.2064492/94‑1 (MQ=60)
                                                                                         TATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAG       <  SRR4302537.5436991/94‑1 (MQ=60)
                                                                                            tgGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTA     <  SRR4302537.1921179/92‑1 (MQ=60)
                                                                                              GGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA   <  SRR4302537.4807832/94‑1 (MQ=60)
                                                                                              GGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA   >  SRR4302537.4187012/1‑94 (MQ=60)
                                                                                                GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA  <  SRR4302537.5095369/94‑1 (MQ=60)
                                                                                                GCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA  <  SRR4302537.3665001/94‑1 (MQ=60)
                                                                                                |                                                                                              
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA  >  NC_000913/4175856‑4176042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: