Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,175,949 |
+G |
intergenic (+82/‑76) |
nusG → / → rplK |
NusG/50S ribosomal subunit protein L11 |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,175,947 | 1 | . | G | 98.4%
| 831.9
/ 4.4
| 242 | intergenic (+80/‑78) | nusG/rplK | NusG/50S ribosomal subunit protein L11 |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base G (124/114); total (126/116) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 |
Only 100 of 265 total aligned reads displayed.
TGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑GG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA > NC_000913/4175855‑4176034
|
tGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑t < 2:3896502/93‑1 (MQ=255)
tGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑t < 1:6235170/93‑1 (MQ=255)
gAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑g > 2:3961470/1‑93 (MQ=255)
gAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑g > 1:2208759/1‑93 (MQ=255)
gAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑g < 1:4644516/93‑1 (MQ=255)
aaaaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑gg > 1:3380067/1‑93 (MQ=255)
aaaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑ggg > 1:1249916/1‑92 (MQ=255)
aaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑gggc > 1:3550743/1‑91 (MQ=255)
aaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑gggcc < 2:2554714/93‑4 (MQ=255)
aaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑gggcc > 2:1980706/1‑90 (MQ=255)
aaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑gggcc < 1:4315002/93‑4 (MQ=255)
aGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑gggcct < 2:6154222/93‑5 (MQ=255)
tAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGcc > 2:4514737/1‑93 (MQ=255)
aaCCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGccc > 2:140815/1‑93 (MQ=255)
aaCCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGccc > 1:6226588/1‑93 (MQ=255)
cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTaa < 2:2807920/93‑1 (MQ=255)
cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTaa > 2:5727257/1‑93 (MQ=255)
aGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTaaa < 2:921981/93‑1 (MQ=255)
gCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTaaaa > 1:5870541/1‑93 (MQ=255)
gCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTaaaa > 2:4187732/1‑93 (MQ=255)
gATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACg > 1:708793/1‑93 (MQ=255)
tCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGAt < 1:551483/93‑1 (MQ=255)
tCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGAt > 2:4694714/1‑93 (MQ=255)
tCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGAt > 1:3081422/1‑93 (MQ=255)
cAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGAtt < 2:1123660/93‑1 (MQ=255)
cAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGAtt > 2:1661093/1‑93 (MQ=255)
aaaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGAttt < 1:411804/93‑1 (MQ=255)
aaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTta < 2:1782467/93‑1 (MQ=255)
gcggcgATTTAATCGTTGTACAAGGCGTGAGATTGGAATACAACTTCGCTCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTtata < 1:6317741/93‑1 (MQ=255)
cggcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTatat > 2:2178137/1‑93 (MQ=255)
gcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCa > 1:6405098/1‑93 (MQ=255)
cgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCAc < 1:2388501/93‑1 (MQ=255)
gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACg > 1:6277203/1‑93 (MQ=255)
gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACg < 2:3696059/93‑1 (MQ=255)
gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACg > 1:1067084/1‑93 (MQ=255)
aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACgg > 2:5741140/1‑93 (MQ=255)
aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACgg > 2:5347056/1‑93 (MQ=255)
tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACggg < 1:1679928/93‑1 (MQ=255)
tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACggg < 1:383551/93‑1 (MQ=255)
tAATCGTTGCACAAGGGGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATT‑GG‑CCTTGCCCGTAAAACGAGTTTTTATATCACGGGGa > 1:6073788/1‑93 (MQ=255)
tAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGa < 2:2152017/93‑1 (MQ=255)
tAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGa > 2:384960/1‑93 (MQ=255)
tAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGa > 1:4564613/1‑93 (MQ=255)
aaTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAg > 2:2519546/1‑93 (MQ=255)
aTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGc < 2:4306676/93‑1 (MQ=255)
aTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGc > 1:3679357/1‑93 (MQ=255)
aTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGc < 2:3429632/93‑1 (MQ=255)
tCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGcc > 2:6028534/1‑93 (MQ=255)
gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctc < 2:806125/93‑1 (MQ=255)
gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctc < 1:3004460/93‑1 (MQ=255)
ttGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctct > 2:296669/1‑93 (MQ=255)
gCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCa < 2:2226636/93‑1 (MQ=255)
cacaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCag > 1:4444385/1‑93 (MQ=255)
cacaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCag > 2:4399792/1‑93 (MQ=255)
acaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCaga > 2:3136561/1‑93 (MQ=255)
caAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCagag > 1:126420/1‑93 (MQ=255)
aaGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAgg > 1:5434182/1‑93 (MQ=255)
aaGGCGTGAGATTGGAATACAATTGCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAgg < 1:5843615/93‑1 (MQ=255)
aGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc > 1:4831484/1‑93 (MQ=255)
ggCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCg > 2:3823774/1‑93 (MQ=255)
ggCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCg > 1:2827186/1‑93 (MQ=255)
gTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGtta < 1:1612319/93‑1 (MQ=255)
tGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttat > 1:2351413/1‑93 (MQ=255)
tGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttat > 1:4977222/1‑93 (MQ=255)
gagaTTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatt < 2:5020622/93‑1 (MQ=255)
agaTTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatta < 1:768879/93‑1 (MQ=255)
agaTTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTACCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatta > 1:3468363/1‑93 (MQ=255)
aTTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAcc < 1:3782971/93‑1 (MQ=255)
tGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCa < 2:976876/93‑1 (MQ=255)
ggAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCaa > 1:2036896/1‑93 (MQ=255)
gAATACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAAc < 1:2540587/93‑1 (MQ=255)
aaTACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCCCGGGGAGCCTCTCAGAGGCGTTATTACCCAACt < 1:4896433/93‑1 (MQ=255)
aaTACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACt < 2:2836992/93‑1 (MQ=255)
aaTACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACt < 2:5937840/93‑1 (MQ=255)
aaTACAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACt < 1:5543311/93‑1 (MQ=255)
aCAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGa > 2:3282064/1‑93 (MQ=255)
cAATTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACTATTTTTTATATCACGGGTAGCCTCTCAGAGGCGTGATTACCATACTTGAg > 2:4809759/1‑93 (MQ=255)
aaTTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAgg < 1:1035007/93‑1 (MQ=255)
aaTTTCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAgg < 1:5214361/93‑1 (MQ=255)
tttCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa > 2:2611481/1‑93 (MQ=255)
tttCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa > 1:2084478/1‑93 (MQ=255)
tttCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa > 1:5706416/1‑93 (MQ=255)
ttCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAATCGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAt < 1:3209103/93‑1 (MQ=255)
tCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAtt < 1:6440957/93‑1 (MQ=255)
tCGCGCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAtt < 2:3507939/93‑1 (MQ=255)
cgcgCCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGTCGTTATTACCCAACTTGAGGAAttt < 2:4558153/93‑1 (MQ=255)
gcgcCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTta > 2:4064527/1‑93 (MQ=255)
gcgcCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTta > 1:2749556/1‑93 (MQ=255)
cgcCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTtat > 2:639438/1‑93 (MQ=255)
gcCTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTtata > 1:974286/1‑93 (MQ=255)
cTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAt < 1:634656/93‑1 (MQ=255)
cTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAt > 2:321805/1‑93 (MQ=255)
cTTTTGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAt > 2:1284649/1‑93 (MQ=255)
ttttGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATg < 1:1478297/93‑1 (MQ=255)
ttttGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATg > 2:5112298/1‑93 (MQ=255)
ttGTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGc > 2:5106648/1‑93 (MQ=255)
gTTTTTA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTa > 2:4617574/1‑93 (MQ=255)
tttttA‑T‑GGTCCTTGCCCGTAAAGCGATTGTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTaa < 1:4359491/93‑1 (MQ=255)
ttttA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAg < 1:1861618/93‑1 (MQ=255)
tttA‑TGGG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGa > 2:1513656/1‑93 (MQ=255)
|
TGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑GG‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA > NC_000913/4175855‑4176034
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑G‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA > NC_000913/4175856‑4176042
|
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑G‑G < SRR4302537.4676634/94‑1 (MQ=60)
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑G‑G < SRR4302537.5757598/94‑1 (MQ=60)
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑G‑G > SRR4302537.3404018/1‑94 (MQ=60)
AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑G‑G‑G < SRR4302537.108953/94‑1 (MQ=60)
AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑G‑G‑G > SRR4302537.1258618/1‑94 (MQ=60)
AAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑G‑G‑GC > SRR4302537.3575820/1‑94 (MQ=60)
AAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑G‑Ggcc > SRR4302537.3073341/1‑91 (MQ=60)
AAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCT < SRR4302537.4344992/94‑1 (MQ=60)
AGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTT < SRR4302537.2370359/94‑1 (MQ=60)
GCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTG < SRR4302537.3756064/94‑1 (MQ=60)
GCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTG < SRR4302537.5092919/94‑1 (MQ=60)
GCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTG < SRR4302537.5324568/94‑1 (MQ=60)
CCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGC < SRR4302537.6478002/94‑1 (MQ=60)
CTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCC > SRR4302537.1264264/1‑94 (MQ=60)
TAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCC > SRR4302537.6269436/1‑94 (MQ=60)
CCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTA > SRR4302537.3004/1‑94 (MQ=60)
CCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAA > SRR4302537.1974310/1‑94 (MQ=60)
CAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAA > SRR4302537.2316977/1‑94 (MQ=60)
AGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAA > SRR4302537.5910809/1‑94 (MQ=60)
GCNANNNANANAGCGGCGANTNNNTCGTTGCACAAGGCGTGAGATNGGAATACAATTTCGCGCCTTTTGTTTTTA‑TNG‑G‑CCTTGCCCGTAAAAC < SRR4302537.4787773/94‑1 (MQ=60)
GCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAAC > SRR4302537.4432743/1‑94 (MQ=60)
GCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAAC < SRR4302537.4383057/94‑1 (MQ=60)
CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACG < SRR4302537.4973824/94‑1 (MQ=60)
CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACG > SRR4302537.713644/1‑94 (MQ=60)
CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACG < SRR4302537.119455/94‑1 (MQ=60)
ATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGAT > SRR4302537.3102883/1‑94 (MQ=60)
ATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGAT > SRR4302537.198586/1‑94 (MQ=60)
TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATT > SRR4302537.2199399/1‑94 (MQ=60)
TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATT < SRR4302537.4637121/94‑1 (MQ=60)
TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATT < SRR4302537.3110390/94‑1 (MQ=60)
TCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATT < SRR4302537.555276/94‑1 (MQ=60)
AAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTT > SRR4302537.3896516/1‑94 (MQ=60)
AAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTT < SRR4302537.414654/94‑1 (MQ=60)
AAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTT < SRR4302537.5259586/94‑1 (MQ=60)
AAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTT < SRR4302537.4815649/94‑1 (MQ=60)
AAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTT > SRR4302537.5564067/1‑94 (MQ=60)
AAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTAT < SRR4302537.2619134/94‑1 (MQ=60)
AAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTAT < SRR4302537.1283139/94‑1 (MQ=60)
AGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATA > SRR4302537.2159883/1‑94 (MQ=60)
AGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATA > SRR4302537.3704970/1‑94 (MQ=60)
AGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATA < SRR4302537.720833/94‑1 (MQ=60)
GCGGCGATTTAATCGTTGTACAAGGCGTGAGATTGGAATACAACTTCGCTCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATAT < SRR4302537.6360975/94‑1 (MQ=60)
CGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATC < SRR4302537.6409811/94‑1 (MQ=60)
GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACTATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCA > SRR4302537.6515480/1‑94 (MQ=60)
GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCA > SRR4302537.4377114/1‑94 (MQ=60)
GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCA > SRR4302537.3970091/1‑94 (MQ=60)
GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCA > SRR4302537.6448693/1‑94 (MQ=60)
GCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCAC < SRR4302537.3474872/94‑1 (MQ=60)
CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACG < SRR4302537.2405323/94‑1 (MQ=60)
CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACG > SRR4302537.1074436/1‑94 (MQ=60)
CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACG > SRR4302537.6320095/1‑94 (MQ=60)
CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACG > SRR4302537.6320268/1‑94 (MQ=60)
CGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACG < SRR4302537.1505403/94‑1 (MQ=60)
GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGG > SRR4302537.5525561/1‑94 (MQ=60)
GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGG > SRR4302537.3664706/1‑94 (MQ=60)
GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGG > SRR4302537.935637/1‑94 (MQ=60)
GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGG > SRR4302537.4871416/1‑94 (MQ=60)
ATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGG < SRR4302537.3234813/94‑1 (MQ=60)
TTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGG < SRR4302537.4975586/94‑1 (MQ=60)
TTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGG < SRR4302537.1691681/94‑1 (MQ=60)
TTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGG > SRR4302537.6236837/1‑94 (MQ=60)
TTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGG < SRR4302537.386209/94‑1 (MQ=60)
TTAATCGTTGCACAAGGGGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATT‑G‑G‑CCTTGCCCGTAAAACGAGTTTTTATATCACGGGGA > SRR4302537.6115528/1‑94 (MQ=60)
TTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGA > SRR4302537.4596210/1‑94 (MQ=60)
TAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAG > SRR4302537.3691574/1‑94 (MQ=60)
AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC > SRR4302537.1636584/1‑94 (MQ=60)
AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC > SRR4302537.6423275/1‑94 (MQ=60)
AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC > SRR4302537.3705243/1‑94 (MQ=60)
CGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTC > SRR4302537.3755810/1‑94 (MQ=60)
GTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCT > SRR4302537.799889/1‑94 (MQ=60)
GTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCT < SRR4302537.3025386/94‑1 (MQ=60)
GCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAG > SRR4302537.4475081/1‑94 (MQ=60)
CACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGA > SRR4302537.5524162/1‑94 (MQ=60)
CACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGA > SRR4302537.1510833/1‑94 (MQ=60)
ACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAG > SRR4302537.127325/1‑94 (MQ=60)
ACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAG > SRR4302537.6325870/1‑94 (MQ=60)
ACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTCTATATCACGGGGAGCCTCTCAGAG > SRR4302537.6325869/1‑94 (MQ=60)
CAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGG < SRR4302537.2271315/94‑1 (MQ=60)
CAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGG > SRR4302537.5471250/1‑94 (MQ=60)
AAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGC > SRR4302537.4864850/1‑94 (MQ=60)
AAGGCGTGAGATTGGAATACAATTGCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGC < SRR4302537.5883682/94‑1 (MQ=60)
AGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCG < SRR4302537.5845021/94‑1 (MQ=60)
AGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCG > SRR4302537.306538/1‑94 (MQ=60)
AGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCG > SRR4302537.2846945/1‑94 (MQ=60)
GGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGT > SRR4302537.6275259/1‑94 (MQ=60)
GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTAT > SRR4302537.2367967/1‑94 (MQ=60)
GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTAT > SRR4302537.5011525/1‑94 (MQ=60)
GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTAT < SRR4302537.1623586/94‑1 (MQ=60)
GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTAT < SRR4302537.6088824/94‑1 (MQ=60)
TGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATT < SRR4302537.3840017/94‑1 (MQ=60)
GAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTA < SRR4302537.3421832/94‑1 (MQ=60)
GAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTA < SRR4302537.2761769/94‑1 (MQ=60)
GAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTACCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTA > SRR4302537.3492899/1‑94 (MQ=60)
AGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAC < SRR4302537.774151/94‑1 (MQ=60)
GATTGGAATTCAATCTCGCGCTTTTGGTTTATA‑T‑GTG‑CCTTACCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACC < SRR4302537.5800636/94‑1 (MQ=60)
ATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCC < SRR4302537.4166887/94‑1 (MQ=60)
ATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCC < SRR4302537.3809531/94‑1 (MQ=60)
TGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAA > SRR4302537.2051096/1‑94 (MQ=60)
TGGAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAA > SRR4302537.3549392/1‑94 (MQ=60)
GAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACT > SRR4302537.4572506/1‑94 (MQ=60)
GAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACT < SRR4302537.1477331/94‑1 (MQ=60)
GAATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACT < SRR4302537.2558402/94‑1 (MQ=60)
AATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCCCGGGGAGCCTCTCAGAGGCGTTATTACCCAACTT < SRR4302537.4930236/94‑1 (MQ=60)
AATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTT < SRR4302537.5581161/94‑1 (MQ=60)
AATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTT < SRR4302537.2447610/94‑1 (MQ=60)
ATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTG > SRR4302537.1835856/1‑94 (MQ=60)
ATACAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTG < SRR4302537.2920424/94‑1 (MQ=60)
CAATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGG < SRR4302537.5886447/94‑1 (MQ=60)
AATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGA < SRR4302537.1042138/94‑1 (MQ=60)
AATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGA < SRR4302537.5250214/94‑1 (MQ=60)
ATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAA > SRR4302537.2099166/1‑94 (MQ=60)
ATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAA > SRR4302537.5745467/1‑94 (MQ=60)
ATTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAA < SRR4302537.6455043/94‑1 (MQ=60)
TTTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAT < SRR4302537.2077328/94‑1 (MQ=60)
TTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAATCGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT < SRR4302537.3231663/94‑1 (MQ=60)
TTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT > SRR4302537.5154863/1‑94 (MQ=60)
TTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT < SRR4302537.4642929/94‑1 (MQ=60)
TTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT > SRR4302537.6367061/1‑94 (MQ=60)
TTCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT < SRR4302537.5074440/94‑1 (MQ=60)
TCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTT < SRR4302537.6484669/94‑1 (MQ=60)
TCGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTT < SRR4302537.6229458/94‑1 (MQ=60)
CGCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTA > SRR4302537.2768738/1‑94 (MQ=60)
GCGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTAT > SRR4302537.475266/1‑94 (MQ=60)
CGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATA > SRR4302537.981003/1‑94 (MQ=60)
CGCCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATA < SRR4302537.6297205/94‑1 (MQ=60)
CCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAT < SRR4302537.2777231/94‑1 (MQ=60)
CCTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAT > SRR4302537.3828333/1‑94 (MQ=60)
CTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG > SRR4302537.5627651/1‑94 (MQ=60)
CTTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG < SRR4302537.638969/94‑1 (MQ=60)
TTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGG < SRR4302537.5907612/94‑1 (MQ=60)
TTTTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGG < SRR4302537.1488575/94‑1 (MQ=60)
TTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCT < SRR4302537.2520564/94‑1 (MQ=60)
TTGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCT < SRR4302537.755970/94‑1 (MQ=60)
TGTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTA < SRR4302537.1812644/94‑1 (MQ=60)
GTTTTTATT‑G‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAA > SRR4302537.1070025/1‑94 (MQ=60)
GTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAA > SRR4302537.5579977/1‑94 (MQ=60)
GTTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAA > SRR4302537.3384563/1‑94 (MQ=60)
TTTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAG < SRR4302537.4389661/94‑1 (MQ=60)
TTTTTA‑T‑G‑GTCCTTGCCCGTAAAGCGATTGTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAG < SRR4302537.4389660/94‑1 (MQ=60)
TTTTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA < SRR4302537.1874583/94‑1 (MQ=60)
TTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAA > SRR4302537.4226366/1‑94 (MQ=60)
TTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAA < SRR4302537.2612823/94‑1 (MQ=60)
TTA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAA < SRR4302537.2064492/94‑1 (MQ=60)
TA‑TGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAG < SRR4302537.5436991/94‑1 (MQ=60)
tgG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTA < SRR4302537.1921179/92‑1 (MQ=60)
G‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA < SRR4302537.4807832/94‑1 (MQ=60)
G‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA > SRR4302537.4187012/1‑94 (MQ=60)
G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA < SRR4302537.5095369/94‑1 (MQ=60)
G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA < SRR4302537.3665001/94‑1 (MQ=60)
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GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTA‑T‑G‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA > NC_000913/4175856‑4176042
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |