Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,355,838	T→C	T120A (ACC→GCC)	cadA ←	lysine decarboxylase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,355,838	0	T	C	100.0%	979.5 / NA	285	T120A (ACC→GCC)	cadA	lysine decarboxylase 1
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (155/130); total (155/130)

Only 100 of 289 total aligned reads displayed.

GGAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGTCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACAT  >  NC_000913/4355747‑4355927

ggAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGC‑TTAGTCAGCGGAGGCAGAATAGTGTTGATATATTTGTCAGTGGCCt                                                                                         >  2:653779/1‑93 (MQ=255)

 gAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCt                                                                                         >  2:4671513/1‑93 (MQ=255)

  aGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTg                                                                                        <  1:5179692/93‑1 (MQ=255)

  aGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTg                                                                                        >  1:2713068/1‑93 (MQ=255)

   gTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGc                                                                                       <  1:1484285/93‑1 (MQ=255)

   gTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGc                                                                                       >  2:448571/1‑93 (MQ=255)

    tACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCt                                                                                      <  2:275327/93‑1 (MQ=255)

    tACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCt                                                                                      >  1:3894396/1‑93 (MQ=255)

    tACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCt                                                                                      >  1:3391071/1‑93 (MQ=255)

    tACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCt                                                                                      >  1:5900374/1‑93 (MQ=255)

    tACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCt                                                                                      <  2:4812009/93‑1 (MQ=255)

     aCAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCtt                                                                                     <  1:824122/93‑1 (MQ=255)

       aGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGa                                                                                   >  2:3010991/1‑93 (MQ=255)

        gAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGAt                                                                                  >  1:2228743/1‑93 (MQ=255)

         aaaGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATc                                                                                 <  2:2539220/93‑1 (MQ=255)

          aaGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCt                                                                                >  1:1127814/1‑93 (MQ=255)

           aGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCtt                                                                               >  1:1001713/1‑93 (MQ=255)

           aGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCtt                                                                               >  1:4712102/1‑93 (MQ=255)

             tataTTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCttat                                                                             >  2:818487/1‑93 (MQ=255)

             tataTTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCttat                                                                             >  1:5917536/1‑93 (MQ=255)

             tataTTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCttat                                                                             <  1:1762758/93‑1 (MQ=255)

             tataTTTACATTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCttat                                                                             <  1:6211466/93‑1 (MQ=255)

              atatTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCttatt                                                                            >  2:4336844/1‑93 (MQ=255)

              atatTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCttatt                                                                            <  2:6165207/93‑1 (MQ=255)

               tatTTACCTTCAGGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCttatta                                                                           >  1:3485676/1‑93 (MQ=255)

                atTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAg                                                                          >  1:3592820/1‑93 (MQ=255)

                 tttACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGc                                                                         >  1:2135919/1‑93 (MQ=255)

                   tACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCaa                                                                       <  1:3146567/93‑1 (MQ=255)

                   tACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCaa                                                                       <  2:3650810/93‑1 (MQ=255)

                    aCCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAat                                                                      <  2:4391811/93‑1 (MQ=255)

                     ccTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAata                                                                     >  1:5702891/1‑93 (MQ=255)

                      cTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAatat                                                                    <  2:3181708/93‑1 (MQ=255)

                      cTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAatat                                                                    <  1:2967108/93‑1 (MQ=255)

                       ttCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATc                                                                   <  1:6185609/93‑1 (MQ=255)

                          aCGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTc                                                                <  2:5355042/93‑1 (MQ=255)

                          aCGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTc                                                                >  1:5282282/1‑93 (MQ=255)

                          aCGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTc                                                                <  2:719923/93‑1 (MQ=255)

                          aCGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTc                                                                <  1:4412681/93‑1 (MQ=255)

                          aCGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTc                                                                <  2:3296953/93‑1 (MQ=255)

                           cGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTca                                                               <  1:5099046/93‑1 (MQ=255)

                           cGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTca                                                               <  1:5626003/93‑1 (MQ=255)

                           cGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTca                                                               >  1:2696993/1‑93 (MQ=255)

                             aaCATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTcagc                                                             >  2:122423/1‑93 (MQ=255)

                              aCATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTcagca                                                            >  2:2148061/1‑93 (MQ=255)

                               cATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTcagcag                                                           >  1:4976522/1‑93 (MQ=255)

                               cATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTcagcag                                                           <  2:5972423/93‑1 (MQ=255)

                                atatTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCagcagc                                                          >  1:4182311/1‑93 (MQ=255)

                                  atTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCAc                                                        >  1:1418358/1‑93 (MQ=255)

                                  atTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCAc                                                        >  2:2441563/1‑93 (MQ=255)

                                   tttAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCAcc                                                       >  2:1144460/1‑93 (MQ=255)

                                          aGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCa                                                >  2:1286705/1‑93 (MQ=255)

                                           gTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCat                                               >  1:1558306/1‑93 (MQ=255)

                                            tGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCata                                              <  1:4933449/93‑1 (MQ=255)

                                             gCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCatat                                             <  2:3139195/93‑1 (MQ=255)

                                             gCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCatat                                             >  2:5528214/1‑93 (MQ=255)

                                               tttAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTc                                           >  2:1496056/1‑93 (MQ=255)

                                                ttAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCa                                          <  2:1574067/93‑1 (MQ=255)

                                                ttAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCa                                          >  1:2519233/1‑93 (MQ=255)

                                                 tAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCaa                                         >  2:4785673/1‑93 (MQ=255)

                                                   gTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAaag                                       >  1:746272/1‑93 (MQ=255)

                                                    tCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAaaga                                      <  1:5785620/93‑1 (MQ=255)

                                                    tCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAaaga                                      >  1:2280748/1‑93 (MQ=255)

                                                     cAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAaagaa                                     <  1:6016497/93‑1 (MQ=255)

                                                      aGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATAGTCAaagaag                                    <  2:6242874/93‑1 (MQ=255)

                                                       gCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGc                                   >  2:5055120/1‑93 (MQ=255)

                                                       gCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGc                                   <  2:5015864/93‑1 (MQ=255)

                                                       acGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGc                                   <  2:3975335/92‑1 (MQ=255)

                                                          gAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGTGCATATTCAAAAAAGATaa                                >  2:4891733/1‑93 (MQ=255)

                                                          gAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTaa                                >  2:3445111/1‑93 (MQ=255)

                                                          gAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTaa                                <  2:390991/93‑1 (MQ=255)

                                                          gAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTaa                                <  2:4275855/93‑1 (MQ=255)

                                                            ggCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATc                              <  2:2894094/93‑1 (MQ=255)

                                                             gCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCt                             >  2:5560987/1‑93 (MQ=255)

                                                             gCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCt                             >  2:168259/1‑93 (MQ=255)

                                                               aGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGt                           >  1:5245535/1‑93 (MQ=255)

                                                                gAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTa                          <  1:5559117/93‑1 (MQ=255)

                                                                gAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTa                          >  1:751366/1‑93 (MQ=255)

                                                                gAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTa                          >  1:1882439/1‑93 (MQ=255)

                                                                 aaTAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTaa                         <  1:6447712/93‑1 (MQ=255)

                                                                 aaTAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTaa                         >  2:1391076/1‑93 (MQ=255)

                                                                 aaTAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTaa                         >  2:3093522/1‑93 (MQ=255)

                                                                      tgtTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCa                    <  2:5171867/93‑1 (MQ=255)

                                                                      tgtTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCa                    >  1:3414463/1‑93 (MQ=255)

                                                                      tgtTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCa                    <  1:4867040/93‑1 (MQ=255)

                                                                      tgtTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCa                    <  1:3829023/93‑1 (MQ=255)

                                                                       gtTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAg                   >  1:5200910/1‑93 (MQ=255)

                                                                           atatatTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCa               <  2:542152/93‑1 (MQ=255)

                                                                             atatTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCAtt             >  2:1948747/1‑93 (MQ=255)

                                                                              tatTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTc            <  2:4726580/93‑1 (MQ=255)

                                                                              tatTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTc            >  2:5452790/1‑93 (MQ=255)

                                                                              tatTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTc            <  2:1542045/93‑1 (MQ=255)

                                                                               atTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATGTGTAAACGCACGTCATTCa           <  2:6325905/93‑1 (MQ=255)

                                                                                ttCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAg          <  2:5770234/93‑1 (MQ=255)

                                                                                 tCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAgg         <  2:1864975/93‑1 (MQ=255)

                                                                                  cGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGc        >  2:4364703/1‑93 (MQ=255)

                                                                                    tCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCtt      >  1:458186/1‑93 (MQ=255)

                                                                                     cAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTa     <  2:3702935/93‑1 (MQ=255)

                                                                                     cAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTa     >  1:997682/1‑93 (MQ=255)

                                                                                      aGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTAc    >  1:2330141/1‑93 (MQ=255)

                                                                                       gTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACa   >  1:1571134/1‑93 (MQ=255)

GGAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGTCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACAT  >  NC_000913/4355747‑4355927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGGAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGTCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACATCGAG  >  NC_000913/4355746‑4355931

AGGAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCC                                                                                              >  SRR4302537.2266345/1‑94 (MQ=60)

 GGAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCT                                                                                             <  SRR4302537.4516309/94‑1 (MQ=60)

 GGAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCT                                                                                             >  SRR4302537.753974/1‑94 (MQ=60)

 GGAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCT                                                                                             <  SRR4302537.3755116/94‑1 (MQ=60)

  GAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTG                                                                                            <  SRR4302537.834814/94‑1 (MQ=60)

  GAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTG                                                                                            >  SRR4302537.2732016/1‑94 (MQ=60)

   AGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGC                                                                                           <  SRR4302537.5215337/94‑1 (MQ=60)

    GTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCT                                                                                          <  SRR4302537.1494615/94‑1 (MQ=60)

    GTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCT                                                                                          >  SRR4302537.3921621/1‑94 (MQ=60)

    GTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCT                                                                                          >  SRR4302537.5005951/1‑94 (MQ=60)

    GTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCT                                                                                          >  SRR4302537.3415094/1‑94 (MQ=60)

    GTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCT                                                                                          >  SRR4302537.5940863/1‑94 (MQ=60)

     TACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTT                                                                                         <  SRR4302537.828514/94‑1 (MQ=60)

      ACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTG                                                                                        >  SRR4302537.5171241/1‑94 (MQ=60)

      ACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTG                                                                                        <  SRR4302537.4583122/94‑1 (MQ=60)

      ACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTG                                                                                        <  SRR4302537.829774/94‑1 (MQ=60)

      ACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTG                                                                                        <  SRR4302537.4278818/94‑1 (MQ=60)

       CAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGA                                                                                       >  SRR4302537.1576611/1‑94 (MQ=60)

       CAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGA                                                                                       >  SRR4302537.3988695/1‑94 (MQ=60)

        AGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGAT                                                                                      >  SRR4302537.2244458/1‑94 (MQ=60)

        AGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGAT                                                                                      <  SRR4302537.5784985/94‑1 (MQ=60)

          AAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCT                                                                                    >  SRR4302537.4762757/1‑94 (MQ=60)

          AAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCT                                                                                    >  SRR4302537.5952720/1‑94 (MQ=60)

          AAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCT                                                                                    >  SRR4302537.1135637/1‑94 (MQ=60)

           AAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTT                                                                                   >  SRR4302537.4744698/1‑94 (MQ=60)

           AAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTT                                                                                   >  SRR4302537.1008625/1‑94 (MQ=60)

             GTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTAT                                                                                 >  SRR4302537.5958143/1‑94 (MQ=60)

             GTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTAT                                                                                 >  SRR4302537.2347546/1‑94 (MQ=60)

              TATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTTTT                                                                                >  SRR4302537.4911725/1‑94 (MQ=60)

              TATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATT                                                                                <  SRR4302537.1775037/94‑1 (MQ=60)

              TATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATT                                                                                >  SRR4302537.4148139/1‑94 (MQ=60)

              TATATTTACATTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATT                                                                                <  SRR4302537.6254254/94‑1 (MQ=60)

               ATATTTACCTTCAGGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTA                                                                               >  SRR4302537.3510329/1‑94 (MQ=60)

                TATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAG                                                                              >  SRR4302537.3618147/1‑94 (MQ=60)

                TATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAG                                                                              >  SRR4302537.5057067/1‑94 (MQ=60)

                TATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAG                                                                              >  SRR4302537.2538015/1‑94 (MQ=60)

                 ATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGC                                                                             >  SRR4302537.2150958/1‑94 (MQ=60)

                   TTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAA                                                                           >  SRR4302537.5849104/1‑94 (MQ=60)

                   TTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAA                                                                           <  SRR4302537.6185320/94‑1 (MQ=60)

                    TACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAAT                                                                          >  SRR4302537.6250816/1‑94 (MQ=60)

                    TACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAAT                                                                          >  SRR4302537.3352314/1‑94 (MQ=60)

                    TACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAAT                                                                          <  SRR4302537.3168642/94‑1 (MQ=60)

                     ACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATA                                                                         >  SRR4302537.5741918/1‑94 (MQ=60)

                      CCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATAT                                                                        <  SRR4302537.3564740/94‑1 (MQ=60)

                       CTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATC                                                                       <  SRR4302537.2987919/94‑1 (MQ=60)

                        TTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCT                                                                      <  SRR4302537.6228219/94‑1 (MQ=60)

                        TTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCT                                                                      <  SRR4302537.750720/94‑1 (MQ=60)

                         TCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTT                                                                     <  SRR4302537.4779958/94‑1 (MQ=60)

                          CACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTC                                                                    >  SRR4302537.5318613/1‑94 (MQ=60)

                           ACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCA                                                                   >  SRR4302537.5115572/1‑94 (MQ=60)

                           ACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCA                                                                   <  SRR4302537.313770/94‑1 (MQ=60)

                           ACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCA                                                                   >  SRR4302537.2715834/1‑94 (MQ=60)

                           ACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCA                                                                   <  SRR4302537.4443137/94‑1 (MQ=60)

                           ACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATGCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCA                                                                   >  SRR4302537.2722117/1‑94 (MQ=60)

                            CGAACATATTTAAACAGTGCTTTAGTCAGCGGAGTCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAG                                                                  <  SRR4302537.6161053/94‑1 (MQ=60)

                            CGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAG                                                                  >  SRR4302537.2152729/1‑94 (MQ=60)

                            CGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAG                                                                  <  SRR4302537.5134170/94‑1 (MQ=60)

                            CGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAG                                                                  <  SRR4302537.5664476/94‑1 (MQ=60)

                             GAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGC                                                                 >  SRR4302537.5965584/1‑94 (MQ=60)

                              AACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCA                                                                >  SRR4302537.784144/1‑94 (MQ=60)

                               ACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAG                                                               >  SRR4302537.5010823/1‑94 (MQ=60)

                               ACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAG                                                               <  SRR4302537.5272215/94‑1 (MQ=60)

                                CATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGC                                                              >  SRR4302537.4211512/1‑94 (MQ=60)

                                  TATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCAC                                                            >  SRR4302537.1428231/1‑94 (MQ=60)

                                   ATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACC                                                           <  SRR4302537.4629512/94‑1 (MQ=60)

                                   ATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACC                                                           >  SRR4302537.1297818/1‑94 (MQ=60)

                                    TTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCC                                                          >  SRR4302537.2003797/1‑94 (MQ=60)

                                    TTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCC                                                          >  SRR4302537.1866766/1‑94 (MQ=60)

                                    TTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCC                                                          <  SRR4302537.5954146/94‑1 (MQ=60)

                                       AAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGC                                                       >  SRR4302537.831175/1‑94 (MQ=60)

                                       AAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGC                                                       >  SRR4302537.1858203/1‑94 (MQ=60)

                                       AAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGCTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGC                                                       >  SRR4302537.2578526/1‑94 (MQ=60)

                                        AACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCG                                                      >  SRR4302537.3426734/1‑94 (MQ=60)

                                        AACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCG                                                      <  SRR4302537.3438149/94‑1 (MQ=60)

                                        AACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCG                                                      >  SRR4302537.2334113/1‑94 (MQ=60)

                                        AACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCG                                                      >  SRR4302537.5851207/1‑94 (MQ=60)

                                          CAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCA                                                    >  SRR4302537.5968999/1‑94 (MQ=60)

                                           AGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCAT                                                   >  SRR4302537.1569180/1‑94 (MQ=60)

                                             TGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATAT                                                 <  SRR4302537.4967477/94‑1 (MQ=60)

                                             TGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATAT                                                 >  SRR4302537.1475528/1‑94 (MQ=60)

                                               CTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCGGCACCCAGCGCATATTC                                               >  SRR4302537.5615959/1‑94 (MQ=60)

                                               CTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTC                                               <  SRR4302537.2888344/94‑1 (MQ=60)

                                                TTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCA                                              >  SRR4302537.2536927/1‑94 (MQ=60)

                                                 TTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAA                                             >  SRR4302537.1555158/1‑94 (MQ=60)

                                                  TAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAA                                            <  SRR4302537.52228/94‑1 (MQ=60)

                                                  TAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAA                                            >  SRR4302537.3233926/1‑94 (MQ=60)

                                                   AGTCAGCGGAGGCATAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAG                                           <  SRR4302537.3782706/94‑1 (MQ=60)

                                                   AGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAG                                           >  SRR4302537.751363/1‑94 (MQ=60)

                                                   AGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAG                                           >  SRR4302537.1200533/1‑94 (MQ=60)

                                                    GTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGA                                          >  SRR4302537.2296843/1‑94 (MQ=60)

                                                    GTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGA                                          >  SRR4302537.2729649/1‑94 (MQ=60)

                                                     TCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAA                                         <  SRR4302537.5244527/94‑1 (MQ=60)

                                                     TCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAA                                         <  SRR4302537.5825288/94‑1 (MQ=60)

                                                      CAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAG                                        >  SRR4302537.5132625/1‑94 (MQ=60)

                                                      CAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAG                                        <  SRR4302537.6057835/94‑1 (MQ=60)

                                                       AGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGC                                       >  SRR4302537.4685615/1‑94 (MQ=60)

                                                       AGCGGAGGCACAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGC                                       >  SRR4302537.3554281/1‑94 (MQ=60)

                                                         CGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTA                                     <  SRR4302537.5653337/94‑1 (MQ=60)

                                                         CGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTA                                     <  SRR4302537.2346336/94‑1 (MQ=60)

                                                          GGAGGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAA                                    <  SRR4302537.2290854/94‑1 (MQ=60)

                                                             GGCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCT                                 <  SRR4302537.3031469/94‑1 (MQ=60)

                                                              GCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTG                                >  SRR4302537.2204924/1‑94 (MQ=60)

                                                              GCAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCATCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTG                                <  SRR4302537.155021/94‑1 (MQ=60)

                                                               CAGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGT                               >  SRR4302537.5281630/1‑94 (MQ=60)

                                                                AGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTA                              >  SRR4302537.756489/1‑94 (MQ=60)

                                                                AGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTA                              >  SRR4302537.1895529/1‑94 (MQ=60)

                                                                AGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTA                              >  SRR4302537.451189/1‑94 (MQ=60)

                                                                AGAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTA                              >  SRR4302537.3449995/1‑94 (MQ=60)

                                                                AGAATAGTGTTCATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTA                              <  SRR4302537.5785291/94‑1 (MQ=60)

                                                                 GAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAA                             <  SRR4302537.5215684/94‑1 (MQ=60)

                                                                 GAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAA                             <  SRR4302537.5597105/94‑1 (MQ=60)

                                                                 GAATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAA                             <  SRR4302537.5309321/94‑1 (MQ=60)

                                                                  AATAGTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAA                            <  SRR4302537.6491445/94‑1 (MQ=60)

                                                                   ATAGTGTTGATATATTCGTCAGCGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAAC                           >  SRR4302537.6464479/1‑94 (MQ=60)

                                                                      GTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCA                        <  SRR4302537.176088/94‑1 (MQ=60)

                                                                      GTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCA                        >  SRR4302537.3438640/1‑94 (MQ=60)

                                                                      GTGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCA                        <  SRR4302537.5297407/94‑1 (MQ=60)

                                                                       TGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAG                       >  SRR4302537.2027441/1‑94 (MQ=60)

                                                                       TGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAG                       <  SRR4302537.3855866/94‑1 (MQ=60)

                                                                       TGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAG                       >  SRR4302537.5236687/1‑94 (MQ=60)

                                                                       TGTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAG                       <  SRR4302537.4900626/94‑1 (MQ=60)

                                                                        GTTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGG                      >  SRR4302537.727758/1‑94 (MQ=60)

                                                                         TTGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGT                     >  SRR4302537.5207953/1‑94 (MQ=60)

                                                                          TGATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTC                    >  SRR4302537.1113279/1‑94 (MQ=60)

                                                                           GATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCA                   >  SRR4302537.1577463/1‑94 (MQ=60)

                                                                            ATATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCAT                  <  SRR4302537.5703199/94‑1 (MQ=60)

                                                                              ATATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTC                >  SRR4302537.3653621/1‑94 (MQ=60)

                                                                                ATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAG              <  SRR4302537.6415212/94‑1 (MQ=60)

                                                                                ATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAG              <  SRR4302537.289097/94‑1 (MQ=60)

                                                                                ATTCGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAG              >  SRR4302537.391324/1‑94 (MQ=60)

                                                                                   CGTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCT           >  SRR4302537.5328470/1‑94 (MQ=60)

                                                                                    GTCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTT          >  SRR4302537.461345/1‑94 (MQ=60)

                                                                                     TCAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTA         >  SRR4302537.1004565/1‑94 (MQ=60)

                                                                                      CAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTAC        >  SRR4302537.6243856/1‑94 (MQ=60)

                                                                                      CAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTAC        <  SRR4302537.3895949/94‑1 (MQ=60)

                                                                                      CAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTAC        >  SRR4302537.2346573/1‑94 (MQ=60)

                                                                                      CAGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTAC        <  SRR4302537.1471436/94‑1 (MQ=60)

                                                                                       AGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACA       >  SRR4302537.1582096/1‑94 (MQ=60)

                                                                                       AGTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACA       >  SRR4302537.5327197/1‑94 (MQ=60)

                                                                                        GTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACAT      <  SRR4302537.4293789/94‑1 (MQ=60)

                                                                                        GTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACAT      <  SRR4302537.1714409/94‑1 (MQ=60)

                                                                                        GTGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACAT      <  SRR4302537.5005223/94‑1 (MQ=60)

                                                                                         TGGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACATC     <  SRR4302537.2391349/94‑1 (MQ=60)

                                                                                          GGCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACATCG    <  SRR4302537.4590334/94‑1 (MQ=60)

                                                                                           GCCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACATCGA   >  SRR4302537.2120973/1‑94 (MQ=60)

                                                                                            CCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACATCGAG  >  SRR4302537.1281425/1‑94 (MQ=60)

AGGAGTACAGAAAGTATATTTACCTTCACGAACATATTTAAACAGTGCTTTAGTCAGCGGAGGCAGAATAGTGTTGATATATTCGTCAGTGGTCTGCTTGATCTTATTAGCAATATCTTCAGCAGCACCCAGCGCATATTCAAAGAAGCTAATCTGTAAACGCAGGTCATTCAGGCTTACATCGAG  >  NC_000913/4355746‑4355931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`