Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,439,829 T→C intergenic (‑76/‑130) msrA ← / → ytfM peptide methionine sulfoxide reductase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,439,8290TC100.0% 1114.1 / NA 316intergenic (‑76/‑130)msrA/ytfMpeptide methionine sulfoxide reductase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (139/177);  total (139/177)

Only 100 of 321 total aligned reads displayed.

ATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACG  >  NC_000913/4439739‑4439918
                                                                                          |                                                                                         
  cAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAAt                                                                                       <  2:2229435/93‑1 (MQ=255)
  cAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAAt                                                                                       >  1:5788598/1‑93 (MQ=255)
   aaaTAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATa                                                                                      >  2:3333086/1‑93 (MQ=255)
   aaaTAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATa                                                                                      <  2:3535935/93‑1 (MQ=255)
   aaaTAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATa                                                                                      <  2:4243967/93‑1 (MQ=255)
    aaTAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAg                                                                                     <  1:4456162/93‑1 (MQ=255)
    aaTAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAg                                                                                     <  2:5762353/93‑1 (MQ=255)
      tAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGt                                                                                   >  2:939505/1‑93 (MQ=255)
      tAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGt                                                                                   >  1:6207904/1‑93 (MQ=255)
       aaaCTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTc                                                                                  <  2:2841481/93‑1 (MQ=255)
        aaCTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCt                                                                                 >  2:4441674/1‑93 (MQ=255)
        aaCTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCt                                                                                 >  1:5238419/1‑93 (MQ=255)
         aCTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTa                                                                                <  1:3899901/93‑1 (MQ=255)
          cTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTaa                                                                               <  2:3160989/93‑1 (MQ=255)
           tCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTaaa                                                                              >  2:4979591/1‑93 (MQ=255)
           tCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTaaa                                                                              >  2:4538601/1‑93 (MQ=255)
             aTGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGt                                                                            <  1:4743433/93‑1 (MQ=255)
              tGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTa                                                                           >  2:1332775/1‑93 (MQ=255)
               ggTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTaa                                                                          <  2:1568193/93‑1 (MQ=255)
               ggTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTaa                                                                          <  2:4706031/93‑1 (MQ=255)
               ggTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTaa                                                                          <  1:1643211/93‑1 (MQ=255)
                gtgtCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTaaa                                                                         <  1:402469/93‑1 (MQ=255)
                 tgtCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTaaaa                                                                        <  1:2784625/93‑1 (MQ=255)
                 tgtCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTaaaa                                                                        <  2:623127/93‑1 (MQ=255)
                  gtCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAAc                                                                       <  1:4774568/93‑1 (MQ=255)
                     gCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATa                                                                    <  1:2432212/93‑1 (MQ=255)
                        ctcCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGa                                                                 <  1:5526259/93‑1 (MQ=255)
                         tcCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGaa                                                                >  1:425315/1‑93 (MQ=255)
                         tcCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGaa                                                                <  2:6369289/93‑1 (MQ=255)
                            cGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAata                                                             >  1:5113988/1‑93 (MQ=255)
                            cGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAata                                                             >  1:2333981/1‑93 (MQ=255)
                              aaaaTCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATAtt                                                           >  2:5438479/1‑93 (MQ=255)
                               aaaTCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATAttt                                                          >  2:2507204/1‑93 (MQ=255)
                               aaaTCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATAttt                                                          <  2:2365218/93‑1 (MQ=255)
                                aaTCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTg                                                         >  1:773868/1‑93 (MQ=255)
                                 aTCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTgg                                                        >  2:893323/1‑93 (MQ=255)
                                  tCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTggg                                                       <  2:1113845/93‑1 (MQ=255)
                                  tCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTggg                                                       <  2:1006342/93‑1 (MQ=255)
                                      tCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGttt                                                   <  1:5444557/93‑1 (MQ=255)
                                       cATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTa                                                  >  2:3960363/1‑93 (MQ=255)
                                        aTTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAg                                                 >  1:3308587/1‑93 (MQ=255)
                                        aTTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAg                                                 <  1:587210/93‑1 (MQ=255)
                                          tGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTc                                               <  1:4209593/93‑1 (MQ=255)
                                           ggggTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCt                                              <  1:1940672/93‑1 (MQ=255)
                                             ggTTAAGGTTGTAGCAAGAGGCGTATTTGCACACAATACCCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGc                                            <  2:5306445/93‑1 (MQ=255)
                                               ttAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAg                                                 <  1:6411582/86‑1 (MQ=255)
                                               ttAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCtt                                          >  1:21635/1‑93 (MQ=255)
                                                 aaGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCtttt                                        >  2:1288880/1‑93 (MQ=255)
                                                  aGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCttttt                                       <  1:154985/93‑1 (MQ=255)
                                                   ggTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTa                                      >  1:6434106/1‑93 (MQ=255)
                                                    gTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTaa                                     <  1:929456/93‑1 (MQ=255)
                                                    gTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTaa                                     <  2:1513286/93‑1 (MQ=255)
                                                     ttGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAAt                                    >  2:2804289/1‑93 (MQ=255)
                                                     ttGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAAt                                    <  2:4179681/93‑1 (MQ=255)
                                                     ttGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAAt                                    <  2:2133628/93‑1 (MQ=255)
                                                      tGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATc                                   >  1:1118116/1‑93 (MQ=255)
                                                      tGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATc                                   <  1:1269710/93‑1 (MQ=255)
                                                       tgtaCAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATcc                                  <  2:5577019/90‑1 (MQ=255)
                                                       gTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATcc                                  <  2:493449/93‑1 (MQ=255)
                                                         aaCAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCat                                >  1:2562433/1‑93 (MQ=255)
                                                         aaCAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCat                                <  2:3011162/93‑1 (MQ=255)
                                                          aCAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCtta                               >  2:1191079/1‑93 (MQ=255)
                                                           cAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCatat                              >  1:267812/1‑93 (MQ=255)
                                                             agagGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATAttc                            >  2:5940218/1‑92 (MQ=255)
                                                             agagGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTa                            >  2:3446376/1‑93 (MQ=255)
                                                             agagGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTa                            <  1:2216949/93‑1 (MQ=255)
                                                             agagGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTa                            >  1:1870931/1‑93 (MQ=255)
                                                             agagGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTa                            <  2:1435058/93‑1 (MQ=255)
                                                              gagGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTAc                           <  2:6045486/93‑1 (MQ=255)
                                                               agGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACt                          >  1:6292915/1‑93 (MQ=255)
                                                                ggCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTg                         >  2:6457251/1‑93 (MQ=255)
                                                                   gTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAt                      <  2:3061047/93‑1 (MQ=255)
                                                                   gTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAt                      >  1:1038637/1‑93 (MQ=255)
                                                                    tATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAtt                     >  2:656982/1‑93 (MQ=255)
                                                                     aTTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAttt                    >  1:1716696/1‑93 (MQ=255)
                                                                     aTTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAttt                    >  1:5717685/1‑93 (MQ=255)
                                                                     aTTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAttt                    <  2:5088269/93‑1 (MQ=255)
                                                                     aTTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAttt                    <  1:3462347/93‑1 (MQ=255)
                                                                        tGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTg                 <  2:1479455/93‑1 (MQ=255)
                                                                        tGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTg                 <  2:484487/93‑1 (MQ=255)
                                                                         gCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGt                >  1:2287827/1‑93 (MQ=255)
                                                                         gCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGt                <  2:5218352/93‑1 (MQ=255)
                                                                            cacaATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTaa             <  1:3036594/93‑1 (MQ=255)
                                                                              caATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGc           >  1:3760572/1‑93 (MQ=255)
                                                                              caATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGc           >  1:4415131/1‑93 (MQ=255)
                                                                               aaTAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGcc          >  1:1380263/1‑93 (MQ=255)
                                                                                 tAACCACCGCGAATAGGTCTAAAGTAAAACATAAGCAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGt        >  2:4082034/1‑93 (MQ=255)
                                                                                 tAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGt        >  2:4754164/1‑93 (MQ=255)
                                                                                   accaccGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGttt      <  1:5028774/93‑1 (MQ=255)
                                                                                    ccaccGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTa     <  2:4296314/93‑1 (MQ=255)
                                                                                    ccaccGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTa     <  2:2930813/93‑1 (MQ=255)
                                                                                    ccaccGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTa     <  2:6334198/93‑1 (MQ=255)
                                                                                    ccaccGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTa     >  2:3656573/1‑93 (MQ=255)
                                                                                    ccaccGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTa     >  1:368352/1‑93 (MQ=255)
                                                                                     caccGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTaa    <  1:4609505/93‑1 (MQ=255)
                                                                                     caccGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTaa    >  1:381728/1‑93 (MQ=255)
                                                                                      accGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAAc   <  1:4912580/93‑1 (MQ=255)
                                                                                      accGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAAc   >  2:5651315/1‑93 (MQ=255)
                                                                                      accGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAAc   >  1:5981739/1‑93 (MQ=255)
                                                                                       ccGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACg  <  2:1813765/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACG  >  NC_000913/4439739‑4439918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGT  >  NC_000913/4439736‑4439922
                                                                                             |                                                                                             
TTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGC                                                                                               >  SRR4302537.3182600/1‑94 (MQ=60)
TTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGC                                                                                               <  SRR4302537.4510134/94‑1 (MQ=60)
 TTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCG                                                                                              <  SRR4302537.1032300/94‑1 (MQ=60)
 TTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCG                                                                                              <  SRR4302537.1915602/94‑1 (MQ=60)
  TATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGA                                                                                             >  SRR4302537.4146315/1‑94 (MQ=60)
   ATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAA                                                                                            >  SRR4302537.2233686/1‑94 (MQ=60)
    TCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAAT                                                                                           >  SRR4302537.5828293/1‑94 (MQ=60)
      AAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAG                                                                                         <  SRR4302537.3854183/94‑1 (MQ=60)
       AATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGG                                                                                        >  SRR4302537.2145716/1‑94 (MQ=60)
       AATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGG                                                                                        <  SRR4302537.4486935/94‑1 (MQ=60)
       AATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGG                                                                                        >  SRR4302537.1677232/1‑94 (MQ=60)
        ATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATACCCACCGCGAATAGGT                                                                                       <  SRR4302537.2509414/94‑1 (MQ=60)
        ATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGT                                                                                       <  SRR4302537.2662463/94‑1 (MQ=60)
        ATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGT                                                                                       >  SRR4302537.6250676/1‑94 (MQ=60)
         TAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTC                                                                                      <  SRR4302537.4369231/94‑1 (MQ=60)
          AAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCT                                                                                     >  SRR4302537.5274463/1‑94 (MQ=60)
          AAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCT                                                                                     <  SRR4302537.2407492/94‑1 (MQ=60)
            ACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAA                                                                                   <  SRR4302537.3927164/94‑1 (MQ=60)
             CTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGGTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAA                                                                                  >  SRR4302537.4971699/1‑94 (MQ=60)
              TCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAG                                                                                 <  SRR4302537.354548/94‑1 (MQ=60)
              TCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAG                                                                                 <  SRR4302537.2691175/94‑1 (MQ=60)
              TCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAG                                                                                 <  SRR4302537.5685504/94‑1 (MQ=60)
               CATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGT                                                                                <  SRR4302537.579490/94‑1 (MQ=60)
                ATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTA                                                                               >  SRR4302537.3824993/1‑94 (MQ=60)
                ATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTA                                                                               <  SRR4302537.4032003/94‑1 (MQ=60)
                ATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTA                                                                               >  SRR4302537.5927473/1‑94 (MQ=60)
                ATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTA                                                                               <  SRR4302537.4776213/94‑1 (MQ=60)
                 TGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAA                                                                              <  SRR4302537.5078657/94‑1 (MQ=60)
                 TGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAA                                                                              <  SRR4302537.3895391/94‑1 (MQ=60)
                  GGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAA                                                                             <  SRR4302537.4027324/94‑1 (MQ=60)
                  GGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAA                                                                             <  SRR4302537.1654721/94‑1 (MQ=60)
                   GTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAA                                                                            <  SRR4302537.1669302/94‑1 (MQ=60)
                   GTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAA                                                                            >  SRR4302537.2199956/1‑94 (MQ=60)
                   GTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAA                                                                            <  SRR4302537.405257/94‑1 (MQ=60)
                    TGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAAC                                                                           >  SRR4302537.757513/1‑94 (MQ=60)
                    TGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAAC                                                                           <  SRR4302537.2804090/94‑1 (MQ=60)
                     GTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACA                                                                          <  SRR4302537.4524267/94‑1 (MQ=60)
                     GTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACA                                                                          >  SRR4302537.279028/1‑94 (MQ=60)
                     GTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACA                                                                          <  SRR4302537.4807532/94‑1 (MQ=60)
                     GTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACA                                                                          >  SRR4302537.6472864/1‑94 (MQ=60)
                     GTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACA                                                                          <  SRR4302537.5101359/94‑1 (MQ=60)
                        GCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAA                                                                       <  SRR4302537.3762306/94‑1 (MQ=60)
                        GCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAA                                                                       <  SRR4302537.2449348/94‑1 (MQ=60)
                        CCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAA                                                                       <  SRR4302537.966302/94‑1 (MQ=60)
                         CTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAG                                                                      >  SRR4302537.3611679/1‑94 (MQ=60)
                          TCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGA                                                                     >  SRR4302537.620626/1‑94 (MQ=60)
                           CTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAA                                                                    <  SRR4302537.5563979/94‑1 (MQ=60)
                           CTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAA                                                                    >  SRR4302537.428264/1‑94 (MQ=60)
                           CTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAA                                                                    >  SRR4302537.2229346/1‑94 (MQ=60)
                           CTCCCGAAAATCGGTCATTGGGGTTAAGGCTGTAACAAGAGGCGTATTTGCACACAATAACCACGGCGAATAAGTCTAAAGTAAAACATAAGAA                                                                    >  SRR4302537.3740757/1‑94 (MQ=60)
                             CCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAAT                                                                  <  SRR4302537.4346080/94‑1 (MQ=60)
                             CCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAAT                                                                  >  SRR4302537.4481892/1‑94 (MQ=60)
                              CCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATA                                                                 >  SRR4302537.5149237/1‑94 (MQ=60)
                              CCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATA                                                                 >  SRR4302537.2350434/1‑94 (MQ=60)
                               CGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATAT                                                                <  SRR4302537.1635588/94‑1 (MQ=60)
                                GAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGACATATT                                                               >  SRR4302537.1628160/1‑94 (MQ=60)
                                GAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATT                                                               >  SRR4302537.4448844/1‑94 (MQ=60)
                                 AAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTT                                                              >  SRR4302537.809801/1‑94 (MQ=60)
                                  AAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTG                                                             >  SRR4302537.779169/1‑94 (MQ=60)
                                  AAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTG                                                             <  SRR4302537.1308788/94‑1 (MQ=60)
                                    ATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGG                                                           <  SRR4302537.2345844/94‑1 (MQ=60)
                                      CGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGT                                                         >  SRR4302537.1833907/1‑94 (MQ=60)
                                      CGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGT                                                         <  SRR4302537.5251663/94‑1 (MQ=60)
                                       GGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTT                                                        >  SRR4302537.3183110/1‑94 (MQ=60)
                                        GTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTT                                                       <  SRR4302537.1062060/94‑1 (MQ=60)
                                        GTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTT                                                       <  SRR4302537.4711116/94‑1 (MQ=60)
                                        GTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTT                                                       <  SRR4302537.667846/94‑1 (MQ=60)
                                         TCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTA                                                      >  SRR4302537.4993287/1‑94 (MQ=60)
                                         TCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTA                                                      <  SRR4302537.5481699/94‑1 (MQ=60)
                                          CATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAG                                                     >  SRR4302537.551731/1‑94 (MQ=60)
                                          CATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAG                                                     <  SRR4302537.3725717/94‑1 (MQ=60)
                                          CATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAG                                                     >  SRR4302537.5796917/1‑94 (MQ=60)
                                          CATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAG                                                     >  SRR4302537.3331991/1‑94 (MQ=60)
                                           ttccgtGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGT                                                    <  SRR4302537.6455200/88‑1 (MQ=60)
                                           ATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAGCCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGT                                                    >  SRR4302537.4587522/1‑94 (MQ=60)
                                           ATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGT                                                    >  SRR4302537.4280433/1‑94 (MQ=60)
                                           ATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGT                                                    <  SRR4302537.591222/94‑1 (MQ=60)
                                           ATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGT                                                    <  SRR4302537.2281685/94‑1 (MQ=60)
                                             TGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCT                                                  >  SRR4302537.4250097/1‑94 (MQ=60)
                                             TGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCT                                                  >  SRR4302537.4515012/1‑94 (MQ=60)
                                             TGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCT                                                  <  SRR4302537.4238958/94‑1 (MQ=60)
                                              GGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTG                                                 >  SRR4302537.3963438/1‑94 (MQ=60)
                                              GGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTG                                                 <  SRR4302537.1954166/94‑1 (MQ=60)
                                              GGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTG                                                 >  SRR4302537.1440630/1‑94 (MQ=60)
                                                GGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCT                                               <  SRR4302537.4896215/94‑1 (MQ=60)
                                                GGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCT                                               <  SRR4302537.112983/94‑1 (MQ=60)
                                                 GTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACCTAAGAAATATTTGGGGTTTAGTCTGCTT                                              >  SRR4302537.6259551/1‑94 (MQ=60)
                                                 GTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTT                                              >  SRR4302537.2863036/1‑94 (MQ=60)
                                                 GTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTT                                              >  SRR4302537.21800/1‑94 (MQ=60)
                                                 GTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTT                                              >  SRR4302537.588664/1‑94 (MQ=60)
                                                 GTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTT                                              <  SRR4302537.591744/94‑1 (MQ=60)
                                                  TTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTT                                             <  SRR4302537.2454414/94‑1 (MQ=60)
                                                   TAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTT                                            <  SRR4302537.5193737/94‑1 (MQ=60)
                                                   TAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTT                                            <  SRR4302537.6362577/94‑1 (MQ=60)
                                                   TAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTT                                            <  SRR4302537.6112214/94‑1 (MQ=60)
                                                     AGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTA                                          >  SRR4302537.5356232/1‑94 (MQ=60)
                                                     AGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTA                                          <  SRR4302537.1904519/94‑1 (MQ=60)
                                                     AGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTA                                          <  SRR4302537.3247712/94‑1 (MQ=60)
                                                     AGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTA                                          >  SRR4302537.6477801/1‑94 (MQ=60)
                                                     AGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTA                                          <  SRR4302537.156089/94‑1 (MQ=60)
                                                      GGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAA                                         >  SRR4302537.5352090/1‑94 (MQ=60)
                                                       GTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAAT                                        <  SRR4302537.935861/94‑1 (MQ=60)
                                                       GTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAAT                                        <  SRR4302537.6306982/94‑1 (MQ=60)
                                                        TTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATC                                       >  SRR4302537.1125854/1‑94 (MQ=60)
                                                        TTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATC                                       <  SRR4302537.5883605/94‑1 (MQ=60)
                                                        TTGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATC                                       >  SRR4302537.148037/1‑94 (MQ=60)
                                                         TGTAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCC                                      <  SRR4302537.1278542/94‑1 (MQ=60)
                                                           TAACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCAT                                    >  SRR4302537.2580383/1‑94 (MQ=60)
                                                             ACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATAT                                  >  SRR4302537.5509478/1‑94 (MQ=60)
                                                             ACAAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATAT                                  >  SRR4302537.269696/1‑94 (MQ=60)
                                                               AAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTA                                <  SRR4302537.2309680/94‑1 (MQ=60)
                                                               AAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTA                                >  SRR4302537.1883950/1‑94 (MQ=60)
                                                               AAGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTA                                >  SRR4302537.5082840/1‑94 (MQ=60)
                                                                AGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTAC                               <  SRR4302537.1051762/94‑1 (MQ=60)
                                                                AGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTAC                               >  SRR4302537.4080644/1‑94 (MQ=60)
                                                                AGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTAC                               <  SRR4302537.2232581/94‑1 (MQ=60)
                                                                AGAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGATTAGTCTGCTTTTTAATCCATATTAC                               >  SRR4302537.3661607/1‑94 (MQ=60)
                                                                 GAGGCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACT                              >  SRR4302537.6336033/1‑94 (MQ=60)
                                                                    GCGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGA                           <  SRR4302537.1842205/94‑1 (MQ=60)
                                                                     CGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAT                          <  SRR4302537.3412150/94‑1 (MQ=60)
                                                                     CGTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAT                          >  SRR4302537.1045787/1‑94 (MQ=60)
                                                                      GTATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATT                         <  SRR4302537.2126317/94‑1 (MQ=60)
                                                                       TATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTT                        >  SRR4302537.1638455/1‑94 (MQ=60)
                                                                       TATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTT                        >  SRR4302537.1728678/1‑94 (MQ=60)
                                                                       TATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTT                        >  SRR4302537.5756817/1‑94 (MQ=60)
                                                                        ATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTT                       <  SRR4302537.3369072/94‑1 (MQ=60)
                                                                        ATTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTT                       <  SRR4302537.3486825/94‑1 (MQ=60)
                                                                         TTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTT                      <  SRR4302537.852811/94‑1 (MQ=60)
                                                                         TTTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTT                      <  SRR4302537.4790396/94‑1 (MQ=60)
                                                                          TTGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTG                     <  SRR4302537.2430403/94‑1 (MQ=60)
                                                                           TGCACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGT                    >  SRR4302537.2303963/1‑94 (MQ=60)
                                                                             CACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTA                  >  SRR4302537.1165330/1‑94 (MQ=60)
                                                                              ACACAATAACCGCCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAA                 <  SRR4302537.2196644/94‑1 (MQ=60)
                                                                              ACACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAA                 <  SRR4302537.3800671/94‑1 (MQ=60)
                                                                               CACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAG                >  SRR4302537.951319/1‑94 (MQ=60)
                                                                               CACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAG                <  SRR4302537.3057761/94‑1 (MQ=60)
                                                                               CACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAG                <  SRR4302537.4743960/94‑1 (MQ=60)
                                                                                ACAATAACCACCGCGAATAGTTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGC               <  SRR4302537.5623085/94‑1 (MQ=60)
                                                                                ACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGC               >  SRR4302537.3786972/1‑94 (MQ=60)
                                                                                ACAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGC               >  SRR4302537.4445611/1‑94 (MQ=60)
                                                                                 CAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCC              >  SRR4302537.1389893/1‑94 (MQ=60)
                                                                                 CAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCC              <  SRR4302537.633138/94‑1 (MQ=60)
                                                                                 CAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCC              >  SRR4302537.479269/1‑94 (MQ=60)
                                                                                 CAATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCC              >  SRR4302537.6467263/1‑94 (MQ=60)
                                                                                  AATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCG             >  SRR4302537.129838/1‑94 (MQ=60)
                                                                                  AATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCG             <  SRR4302537.2637867/94‑1 (MQ=60)
                                                                                   ATAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGT            >  SRR4302537.4879873/1‑94 (MQ=60)
                                                                                    TAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTT           >  SRR4302537.6387347/1‑94 (MQ=60)
                                                                                    TAACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTT           <  SRR4302537.2767793/94‑1 (MQ=60)
                                                                                     AACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTT          >  SRR4302537.2997355/1‑94 (MQ=60)
                                                                                      ACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTA         >  SRR4302537.370907/1‑94 (MQ=60)
                                                                                      ACCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTA         <  SRR4302537.5063397/94‑1 (MQ=60)
                                                                                       CCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAA        >  SRR4302537.384375/1‑94 (MQ=60)
                                                                                       CCACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAA        <  SRR4302537.193424/94‑1 (MQ=60)
                                                                                        CACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAAC       <  SRR4302537.4641419/94‑1 (MQ=60)
                                                                                        CACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAAC       >  SRR4302537.6022803/1‑94 (MQ=60)
                                                                                         ACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACG      <  SRR4302537.4946484/94‑1 (MQ=60)
                                                                                         ACCGCGAATAGGTCTAAAGTAAAACATAAGAAATATGTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACT      <  SRR4302537.5799321/94‑1 (MQ=60)
                                                                                          CCGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGG     >  SRR4302537.4183491/1‑94 (MQ=60)
                                                                                           CGCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGC    >  SRR4302537.5678256/1‑94 (MQ=60)
                                                                                           CGCGAATAGGACTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGC    <  SRR4302537.2807757/94‑1 (MQ=60)
                                                                                            GCGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCG   >  SRR4302537.2604944/1‑94 (MQ=60)
                                                                                             CGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGT  >  SRR4302537.5191800/1‑94 (MQ=60)
                                                                                             |                                                                                             
TTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGT  >  NC_000913/4439736‑4439922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑