Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,574,258 |
A→G |
M355V (ATG→GTG) |
mcrD → |
McrD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,574,258 | 0 | A | G | 99.7%
| 1021.0
/ ‑5.2
| 292 | M355V (ATG→GTG) | mcrD | McrD |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (145/146); minor base T (1/0); total (146/146) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
Only 100 of 302 total aligned reads displayed.
TTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAG > NC_000913/4574168‑4574347
|
ttCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTg > 1:4041456/1‑93 (MQ=255)
tCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCAACCAGGGGGTgg < 2:3947539/93‑1 (MQ=255)
cGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTggg < 2:577126/93‑1 (MQ=255)
gACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGc < 1:5762224/93‑1 (MQ=255)
gACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGc > 2:2666398/1‑93 (MQ=255)
gACTCGCCGCGAGATATCCCACACCATCGTAATCAGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGc < 1:6168672/93‑1 (MQ=255)
aCTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTgggat < 2:5345282/93‑3 (MQ=255)
aCTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCt > 2:3860033/1‑93 (MQ=255)
cTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTa > 2:2031630/1‑93 (MQ=255)
cTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTa > 2:2862521/1‑93 (MQ=255)
ccgccgcGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTAc < 1:6442039/92‑1 (MQ=255)
gccgcGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTg < 1:3431672/93‑1 (MQ=255)
cgcgcgATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGgc < 1:1405903/93‑1 (MQ=255)
gcgATATCCCTCACCATCGTAAACTGACGGTGAGTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCa > 1:6047343/1‑93 (MQ=255)
gcgATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCa < 2:3630521/93‑1 (MQ=255)
cgATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCAt > 1:2863070/1‑93 (MQ=255)
cgATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCAt > 2:2138799/1‑93 (MQ=255)
gATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATc < 1:3546898/93‑1 (MQ=255)
atttCCCTCACCACCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCa < 2:6454922/90‑1 (MQ=255)
atatCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGTCGCATCa > 2:4438720/1‑93 (MQ=255)
tatCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCaa > 1:3906692/1‑93 (MQ=255)
atCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAAc > 1:2997275/1‑93 (MQ=255)
tCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACt < 1:4370886/93‑1 (MQ=255)
cccTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACtt > 1:3098252/1‑93 (MQ=255)
cccTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACtt < 2:4884714/93‑1 (MQ=255)
cccTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACtt > 1:4730276/1‑93 (MQ=255)
cTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACtttt > 1:2300626/1‑93 (MQ=255)
tCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTc > 2:603448/1‑93 (MQ=255)
tCACCATCGTAAACTGACGGTGACTTTTCAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTc < 1:6219794/93‑1 (MQ=255)
ccATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATc < 1:5621639/93‑1 (MQ=255)
ccATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATc < 1:6310136/93‑1 (MQ=255)
ccATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATc < 2:5475099/93‑1 (MQ=255)
ccATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATc > 2:2938808/1‑93 (MQ=255)
cGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCaa > 1:2008635/1‑93 (MQ=255)
cGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAAATTTTCATCGcca > 2:4617660/1‑91 (MQ=255)
gTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGACCAGGGGGTGGGCTACTGGCGCATCAATTTTTCATCGCaag > 1:1032934/1‑92 (MQ=255)
tAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATg > 2:230141/1‑93 (MQ=255)
aaaCTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCCATgg > 2:1254865/1‑93 (MQ=255)
aaaCTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATgg < 2:2751436/93‑1 (MQ=255)
aaaCTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATgg < 1:2552424/93‑1 (MQ=255)
aaCTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTTATCGCAATGGc > 2:4367965/1‑93 (MQ=255)
aCTGACGGTGACTTTTGAGGATGGTCAGTTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCa < 1:940872/93‑1 (MQ=255)
aCTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCa < 2:904296/93‑1 (MQ=255)
aCTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCa < 2:6375910/93‑1 (MQ=255)
cTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCAt < 2:3218616/93‑1 (MQ=255)
cTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCAt < 1:5175969/93‑1 (MQ=255)
tGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCAtt < 1:2214809/93‑1 (MQ=255)
tGACGGGGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGTGTGGTCTACTGGCGCATCAACTTTTCATCGCAATGGCAtt > 2:2085679/1‑93 (MQ=255)
gACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTa < 2:1515380/93‑1 (MQ=255)
aCGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTAc > 1:5441572/1‑93 (MQ=255)
gTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACttt > 1:685852/1‑93 (MQ=255)
gTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACttt > 2:4492976/1‑93 (MQ=255)
gACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGa > 2:4074447/1‑93 (MQ=255)
aCTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGAt > 2:2722165/1‑93 (MQ=255)
cTTTTGATGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGAtt > 1:1861016/1‑93 (MQ=255)
cTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGAtt < 1:3786500/93‑1 (MQ=255)
cTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGAtt < 1:3214729/93‑1 (MQ=255)
tttGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTc > 1:5546532/1‑93 (MQ=255)
gAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCcgc < 1:5523202/93‑1 (MQ=255)
ggATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGa < 2:112936/93‑1 (MQ=255)
ggATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGa > 1:2689222/1‑93 (MQ=255)
tGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGa < 1:5687889/93‑1 (MQ=255)
tGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGa < 2:1770397/93‑1 (MQ=255)
tGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGa < 2:3728280/93‑1 (MQ=255)
tGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGa < 1:5883923/93‑1 (MQ=255)
tGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGa < 2:5936657/93‑1 (MQ=255)
ggTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGAc < 1:1722830/93‑1 (MQ=255)
gTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACg > 1:3720775/1‑93 (MQ=255)
tCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGt < 2:4727519/93‑1 (MQ=255)
cAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtt < 2:3038734/93‑1 (MQ=255)
ggTATTGAAGATCCGCTTGGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttt > 1:4813061/1‑92 (MQ=255)
ggTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttc < 1:6361586/93‑1 (MQ=255)
agTATTGAAGACCCGCATCGATCAGGGTGTGGGCTACTGGCGCAGCAACTTTTCATCGCAATGGCATTGCTTTGATTTCCGCGATGACGtttc < 2:5023303/92‑1 (MQ=255)
gTATTGAAGATCCGCTTCGATCAGGGGTTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttct > 2:2471637/1‑93 (MQ=255)
tATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttctt > 1:4135269/1‑93 (MQ=255)
aTTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttcttt < 1:2631352/93‑1 (MQ=255)
aTTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttcttt > 2:5709576/1‑93 (MQ=255)
ttGAAGATGCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACGTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttctttc < 1:5362113/93‑1 (MQ=255)
gAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCa > 2:1957048/1‑93 (MQ=255)
aaGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAg > 2:1611865/1‑93 (MQ=255)
gATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGtt > 1:1774967/1‑93 (MQ=255)
tCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAg < 2:495430/93‑1 (MQ=255)
ccGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGt < 1:1304402/93‑1 (MQ=255)
cGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTc < 2:4187851/93‑1 (MQ=255)
gCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCa < 2:2588523/93‑1 (MQ=255)
ttCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaa > 1:833944/1‑93 (MQ=255)
ttCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGACATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaa < 2:3501717/93‑1 (MQ=255)
tCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaaa < 1:1575084/93‑1 (MQ=255)
gATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTATTCAAAATg < 2:6284464/93‑1 (MQ=255)
gATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATg > 2:5575432/1‑93 (MQ=255)
gATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATg > 2:459775/1‑93 (MQ=255)
aTCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATgg > 1:4908090/1‑93 (MQ=255)
aTCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATgg > 1:5963858/1‑93 (MQ=255)
tCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGc > 2:5836154/1‑93 (MQ=255)
tCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGc > 2:3392094/1‑93 (MQ=255)
tCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGc < 1:2760329/93‑1 (MQ=255)
tCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGc < 2:4310768/93‑1 (MQ=255)
cAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCt < 2:5216662/93‑1 (MQ=255)
aGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTc < 1:3378527/93‑1 (MQ=255)
ggggTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAg < 1:4471149/93‑1 (MQ=255)
|
TTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAG > NC_000913/4574168‑4574347
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCT > NC_000913/4574165‑4574351
|
GTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGG > SRR4302537.5005102/1‑94 (MQ=60)
GTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGG > SRR4302537.381907/1‑94 (MQ=60)
GTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGG < SRR4302537.4444069/94‑1 (MQ=60)
TGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGT < SRR4302537.5790883/94‑1 (MQ=60)
GTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTG < SRR4302537.4755423/94‑1 (MQ=60)
GTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTG > SRR4302537.3973296/1‑94 (MQ=60)
GTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTG > SRR4302537.4069725/1‑94 (MQ=60)
TTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGG < SRR4302537.4116182/94‑1 (MQ=60)
CGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGC > SRR4302537.807465/1‑94 (MQ=60)
CGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGC < SRR4302537.665918/94‑1 (MQ=60)
GACTCGCCGCGCGATATCCCTCTCCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCT < SRR4302537.2840120/94‑1 (MQ=60)
GACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCT > SRR4302537.5336945/1‑94 (MQ=60)
GACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCT < SRR4302537.5801698/94‑1 (MQ=60)
GACTCGCCGCGAGATATCCCACACCATCGTAATCAGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCT < SRR4302537.6211150/94‑1 (MQ=60)
ACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTA > SRR4302537.5649556/1‑94 (MQ=60)
ACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTA > SRR4302537.3925826/1‑94 (MQ=60)
CCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACT < SRR4302537.6485755/94‑1 (MQ=60)
CGCCGCGCGATATCCCTCACCATCGTAAACTGACGGGGACTTTTGAGGATGGTCAGGTATTTAAGATCCGCTTCGATCAGGGGGTGGGCTACTG > SRR4302537.427843/1‑94 (MQ=60)
GCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGG < SRR4302537.3455962/94‑1 (MQ=60)
CGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCG < SRR4302537.5558632/94‑1 (MQ=60)
CGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCG < SRR4302537.5614845/94‑1 (MQ=60)
CGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCG < SRR4302537.1415692/94‑1 (MQ=60)
GCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGC > SRR4302537.5844713/1‑94 (MQ=60)
CGCGATATCCCTCACCATCGTAAACTGACGGTGAGTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCA > SRR4302537.6088872/1‑94 (MQ=60)
GCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCAT > SRR4302537.2883144/1‑94 (MQ=60)
CGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATC > SRR4302537.5742330/1‑94 (MQ=60)
CGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATC < SRR4302537.1138006/94‑1 (MQ=60)
GATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCA < SRR4302537.3571954/94‑1 (MQ=60)
ATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAA > SRR4302537.3934002/1‑94 (MQ=60)
ATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTACTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAA < SRR4302537.3485760/94‑1 (MQ=60)
TATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAAC > SRR4302537.3018171/1‑94 (MQ=60)
TCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTT > SRR4302537.4762961/1‑94 (MQ=60)
TCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTT > SRR4302537.3119877/1‑94 (MQ=60)
TCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTT < SRR4302537.4401089/94‑1 (MQ=60)
CCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTT > SRR4302537.2316867/1‑94 (MQ=60)
CCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTT < SRR4302537.2820594/94‑1 (MQ=60)
CTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTC < SRR4302537.478740/94‑1 (MQ=60)
CTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTC > SRR4302537.2299886/1‑94 (MQ=60)
TCACCATCGTAAACTGACGGTGACTTTTCAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCA < SRR4302537.6262616/94‑1 (MQ=60)
CACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCAT > SRR4302537.3597881/1‑94 (MQ=60)
CCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCG < SRR4302537.6353339/94‑1 (MQ=60)
CCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCG < SRR4302537.5660074/94‑1 (MQ=60)
CATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGC > SRR4302537.5174876/1‑94 (MQ=60)
CATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGC > SRR4302537.2450281/1‑94 (MQ=60)
CATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGC > SRR4302537.4081925/1‑94 (MQ=60)
ATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCA > SRR4302537.6459181/1‑94 (MQ=60)
TCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAA < SRR4302537.5482784/94‑1 (MQ=60)
TCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAA > SRR4302537.2022634/1‑94 (MQ=60)
TCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAA < SRR4302537.4507859/94‑1 (MQ=60)
CGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGACCAGGGGGTGGGCTACTGGCGCATCAATTTTTCATCGCAAG > SRR4302537.1040049/1‑94 (MQ=60)
GTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATG > SRR4302537.4911471/1‑94 (MQ=60)
GTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATG > SRR4302537.5693770/1‑94 (MQ=60)
TAAACTGACGGTGACTGTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGG < SRR4302537.1504605/94‑1 (MQ=60)
AAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGC < SRR4302537.2570324/94‑1 (MQ=60)
AAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGC < SRR4302537.6186230/94‑1 (MQ=60)
AAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGC > SRR4302537.3429885/1‑94 (MQ=60)
AACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCA > SRR4302537.5817161/1‑94 (MQ=60)
AACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCA > SRR4302537.3445165/1‑94 (MQ=60)
ACTGACGGTGACTTTTGAGGATGGTCAGTTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCAT < SRR4302537.947359/94‑1 (MQ=60)
ACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCAT < SRR4302537.3809378/94‑1 (MQ=60)
CTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATT < SRR4302537.5211595/94‑1 (MQ=60)
TGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTA > SRR4302537.5693339/1‑94 (MQ=60)
TGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTA < SRR4302537.2230429/94‑1 (MQ=60)
GACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTAC > SRR4302537.5478691/1‑94 (MQ=60)
GACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTAC > SRR4302537.768327/1‑94 (MQ=60)
ACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCGATGGCATTACT < SRR4302537.159246/94‑1 (MQ=60)
ACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACT > SRR4302537.1799759/1‑94 (MQ=60)
ACGGTGACTTTTGAGGATGGTCAGGGATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACT > SRR4302537.661455/1‑94 (MQ=60)
GGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTT > SRR4302537.690556/1‑94 (MQ=60)
GTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTG > SRR4302537.2683427/1‑94 (MQ=60)
TGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGT > SRR4302537.4224782/1‑94 (MQ=60)
GACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGAT > SRR4302537.6395194/1‑94 (MQ=60)
GACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGAT < SRR4302537.3366233/94‑1 (MQ=60)
ACTTTTGATGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATT > SRR4302537.1873975/1‑94 (MQ=60)
ACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATT < SRR4302537.3927870/94‑1 (MQ=60)
CTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTT < SRR4302537.3813087/94‑1 (MQ=60)
CTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTT < SRR4302537.3237352/94‑1 (MQ=60)
CTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTT < SRR4302537.6310830/94‑1 (MQ=60)
TTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTC > SRR4302537.5584407/1‑94 (MQ=60)
TTGTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTC < SRR4302537.2586234/94‑1 (MQ=60)
TTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCC < SRR4302537.3589423/94‑1 (MQ=60)
TTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCG > SRR4302537.4485432/1‑94 (MQ=60)
TTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCG > SRR4302537.5433414/1‑94 (MQ=60)
TTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCG < SRR4302537.6007960/94‑1 (MQ=60)
GAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCG < SRR4302537.3457538/94‑1 (MQ=60)
GAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCG < SRR4302537.5560906/94‑1 (MQ=60)
GAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCG < SRR4302537.5034455/94‑1 (MQ=60)
GAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCG > SRR4302537.598930/1‑94 (MQ=60)
AGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGA > SRR4302537.2707991/1‑94 (MQ=60)
AGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGA > SRR4302537.601324/1‑94 (MQ=60)
AGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGA > SRR4302537.1720352/1‑94 (MQ=60)
GGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGAT > SRR4302537.5414821/1‑94 (MQ=60)
GATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATG < SRR4302537.6097734/94‑1 (MQ=60)
GATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATG < SRR4302537.639382/94‑1 (MQ=60)
TGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGAC < SRR4302537.2741174/94‑1 (MQ=60)
TGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGAC < SRR4302537.3774732/94‑1 (MQ=60)
TGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGAC < SRR4302537.925220/94‑1 (MQ=60)
TGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGAC < SRR4302537.6224501/94‑1 (MQ=60)
TGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGAC < SRR4302537.5726793/94‑1 (MQ=60)
TGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGAC < SRR4302537.5924296/94‑1 (MQ=60)
TGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATCTCCGCGATGAC < SRR4302537.2117936/94‑1 (MQ=60)
GGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACG < SRR4302537.1734870/94‑1 (MQ=60)
GGTCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACG > SRR4302537.3746918/1‑94 (MQ=60)
TCAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTT < SRR4302537.2274095/94‑1 (MQ=60)
CAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTT > SRR4302537.2905724/1‑94 (MQ=60)
CAGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTT < SRR4302537.1911985/94‑1 (MQ=60)
AGGTATTGAAGATCCGCTTGGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTT > SRR4302537.4846285/1‑94 (MQ=60)
AGGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTC < SRR4302537.2641080/94‑1 (MQ=60)
GGTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCT < SRR4302537.6404987/94‑1 (MQ=60)
GTATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTT > SRR4302537.4164121/1‑94 (MQ=60)
ATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTC < SRR4302537.5372272/94‑1 (MQ=60)
ATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTC < SRR4302537.6304468/94‑1 (MQ=60)
ATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTC < SRR4302537.2649776/94‑1 (MQ=60)
ATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTC > SRR4302537.139171/1‑94 (MQ=60)
ATTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTC > SRR4302537.1353256/1‑94 (MQ=60)
TTGAAGATGCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACGTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCC < SRR4302537.5398822/94‑1 (MQ=60)
TTGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCC < SRR4302537.5580486/94‑1 (MQ=60)
TGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCA > SRR4302537.2042423/1‑94 (MQ=60)
TGAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCA < SRR4302537.5741568/94‑1 (MQ=60)
GAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAG < SRR4302537.1842738/94‑1 (MQ=60)
GAAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAG > SRR4302537.4815184/1‑94 (MQ=60)
AAGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGT < SRR4302537.3243275/94‑1 (MQ=60)
AGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTT < SRR4302537.3034229/94‑1 (MQ=60)
AGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTT > SRR4302537.2510404/1‑94 (MQ=60)
AGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTT < SRR4302537.3138734/94‑1 (MQ=60)
AGATCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTT > SRR4302537.1787326/1‑94 (MQ=60)
TCTGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGT < SRR4302537.4487793/94‑1 (MQ=60)
TCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGT > SRR4302537.1878232/1‑94 (MQ=60)
TCCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGT < SRR4302537.4668133/94‑1 (MQ=60)
CCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTC < SRR4302537.2946181/94‑1 (MQ=60)
CCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTC < SRR4302537.5942157/94‑1 (MQ=60)
CCGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTC < SRR4302537.1313471/94‑1 (MQ=60)
CGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCA < SRR4302537.4006622/94‑1 (MQ=60)
CGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCA < SRR4302537.1769471/94‑1 (MQ=60)
CGCTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCA > SRR4302537.2742443/1‑94 (MQ=60)
CTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAA > SRR4302537.839651/1‑94 (MQ=60)
CTTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAA > SRR4302537.3215317/1‑94 (MQ=60)
TTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAA > SRR4302537.91745/1‑94 (MQ=60)
TTCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAA < SRR4302537.3070461/94‑1 (MQ=60)
TCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAAT < SRR4302537.2684366/94‑1 (MQ=60)
TCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAAT < SRR4302537.1586070/94‑1 (MQ=60)
TCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAAT < SRR4302537.146717/94‑1 (MQ=60)
TCGATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAAT > SRR4302537.62289/1‑94 (MQ=60)
GATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGG > SRR4302537.6004792/1‑94 (MQ=60)
GATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGG > SRR4302537.4928049/1‑94 (MQ=60)
GATCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGG > SRR4302537.4941967/1‑94 (MQ=60)
TCAGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCT < SRR4302537.2779590/94‑1 (MQ=60)
AGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCA < SRR4302537.1102783/94‑1 (MQ=60)
AGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCA < SRR4302537.3402468/94‑1 (MQ=60)
AGGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCA < SRR4302537.5582481/94‑1 (MQ=60)
GGGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAG < SRR4302537.6459755/94‑1 (MQ=60)
GGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGG < SRR4302537.4502075/94‑1 (MQ=60)
GGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGG < SRR4302537.176465/94‑1 (MQ=60)
GGGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGG > SRR4302537.5227358/1‑94 (MQ=60)
GGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGC > SRR4302537.2010989/1‑94 (MQ=60)
GGGTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGC > SRR4302537.3294212/1‑94 (MQ=60)
GTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCT < SRR4302537.889431/94‑1 (MQ=60)
GTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCT < SRR4302537.842607/94‑1 (MQ=60)
GTGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCT < SRR4302537.4740120/94‑1 (MQ=60)
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GTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCT > NC_000913/4574165‑4574351
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
