Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,614,238	G→T	L133I (CTA→ATA)	yjjI ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,614,238	0	G	T	100.0%	945.9 / NA	264	L133I (CTA→ATA)	yjjI	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (117/147); total (117/147)

Only 100 of 270 total aligned reads displayed.

CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAGAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG  >  NC_000913/4614148‑4614327

 gATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAt                                                                                        >  1:1026028/1‑93 (MQ=255)

 gATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAt                                                                                        <  2:2369459/93‑1 (MQ=255)

 gATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAt                                                                                        <  1:6321829/93‑1 (MQ=255)

 gATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAt                                                                                        >  2:3771343/1‑93 (MQ=255)

 gATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAt                                                                                        >  1:2561555/1‑93 (MQ=255)

   tatTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTc                                                                                      <  1:4624288/93‑1 (MQ=255)

   tatTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTc                                                                                      >  1:4346025/1‑93 (MQ=255)

   tatTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTc                                                                                      <  1:2191533/93‑1 (MQ=255)

    atTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCt                                                                                     >  1:564878/1‑93 (MQ=255)

      tGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTaa                                                                                   <  2:5365339/93‑1 (MQ=255)

       tgCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAAc                                                                                  <  1:150464/92‑1 (MQ=255)

       ggCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAAc                                                                                  <  1:3568015/93‑1 (MQ=255)

        gCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACa                                                                                 <  1:16567/93‑1 (MQ=255)

         cGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACAt                                                                                <  1:2377813/93‑1 (MQ=255)

          gTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATa                                                                               <  2:347257/93‑1 (MQ=255)

          gTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATa                                                                               >  2:593882/1‑93 (MQ=255)

           tGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATAc                                                                              <  2:1417897/93‑1 (MQ=255)

            gCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACg                                                                             <  1:1331012/93‑1 (MQ=255)

             gaTAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACgg                                                                            <  1:6207434/92‑1 (MQ=255)

             cATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACgg                                                                            <  1:849541/93‑1 (MQ=255)

             cATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACgg                                                                            <  2:3848150/93‑1 (MQ=255)

             cATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACgg                                                                            <  1:2652370/93‑1 (MQ=255)

               tAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGtt                                                                          <  2:1483795/93‑1 (MQ=255)

               tAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGtt                                                                          <  2:5407739/93‑1 (MQ=255)

               tAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGtt                                                                          <  2:2473844/93‑1 (MQ=255)

               tAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGtt                                                                          <  1:5629207/93‑1 (MQ=255)

               tAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTATAACATACGGtt                                                                          <  1:3121563/93‑1 (MQ=255)

               tAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAATCTAACATAAGGtg                                                                          >  2:1842768/1‑92 (MQ=255)

                  aGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGca                                                                       >  2:4857391/1‑93 (MQ=255)

                   ggCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGaaa                                                                      >  2:4758733/1‑93 (MQ=255)

                     cGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaaca                                                                    <  2:3097260/93‑1 (MQ=255)

                      gTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaacaa                                                                   <  1:1162844/93‑1 (MQ=255)

                      gTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaacaa                                                                   >  1:5038870/1‑93 (MQ=255)

                       tCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCaacaac                                                                  >  1:1398793/1‑93 (MQ=255)

                         tGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGc                                                                <  2:333161/93‑1 (MQ=255)

                            cAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATc                                                             <  2:41995/93‑1 (MQ=255)

                             aGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATcc                                                            >  2:3206858/1‑93 (MQ=255)

                              gggTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCa                                                           >  1:1738279/1‑93 (MQ=255)

                              gggTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCa                                                           >  2:2620190/1‑93 (MQ=255)

                               ggTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAg                                                          <  2:4831383/93‑1 (MQ=255)

                               ggTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAg                                                          >  2:518636/1‑93 (MQ=255)

                                gTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGt                                                         <  2:1260855/93‑1 (MQ=255)

                                 ttCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGtt                                                        <  1:5527285/93‑1 (MQ=255)

                                 ttCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGtt                                                        >  2:2117904/1‑93 (MQ=255)

                                 ttCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGtt                                                        <  2:4030496/93‑1 (MQ=255)

                                 ttCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACCGTTGCAACAACGCATCCAGtt                                                        <  1:6421144/93‑1 (MQ=255)

                                   cTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGc                                                      >  2:6250407/1‑93 (MQ=255)

                                    tGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGcc                                                     >  2:5523267/1‑93 (MQ=255)

                                    tGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGcc                                                     >  2:5997811/1‑93 (MQ=255)

                                     gTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGccc                                                    <  2:2098592/93‑1 (MQ=255)

                                      tCGAGGTAACGCCAGAAACGTTTTATTCGAACATCTATCTCGTCTTGTGTTATAATGCTAACATACGGTTGCAACAACGCATCCAGTTGcccc                                                   <  1:3292260/93‑1 (MQ=255)

                                        gAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAg                                                 >  1:6011917/1‑93 (MQ=255)

                                        gAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAg                                                 <  1:2139045/93‑1 (MQ=255)

                                              aCGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAc                                           >  1:4264529/1‑93 (MQ=255)

                                              aCGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAc                                           <  1:4803319/93‑1 (MQ=255)

                                                    gAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCAt                                     <  1:2264271/93‑1 (MQ=255)

                                                     aaaCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATc                                    <  2:3158832/93‑1 (MQ=255)

                                                      aaCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCg                                   >  2:1167267/1‑93 (MQ=255)

                                                       aCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGa                                  <  2:715865/93‑1 (MQ=255)

                                                       aCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGa                                  >  1:3859868/1‑93 (MQ=255)

                                                         gTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAtg                                >  2:2479149/1‑93 (MQ=255)

                                                         gTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAtg                                >  2:1708427/1‑93 (MQ=255)

                                                          ttttATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAtgt                               <  1:1697868/93‑1 (MQ=255)

                                                           tttATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAtgtg                              <  2:2265300/93‑1 (MQ=255)

                                                           tttATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAtgtg                              >  2:6054371/1‑93 (MQ=255)

                                                             tATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGAc                            >  1:3765997/1‑93 (MQ=255)

                                                              aTTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGAcc                           >  2:5683069/1‑93 (MQ=255)

                                                              aTTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGAcc                           >  1:5752248/1‑93 (MQ=255)

                                                               ttCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCg                          >  1:6187976/1‑93 (MQ=255)

                                                                tCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGa                         <  2:3243499/93‑1 (MQ=255)

                                                                tCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGa                         >  1:2892969/1‑93 (MQ=255)

                                                                tCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGa                         <  2:4981412/93‑1 (MQ=255)

                                                                 cGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGAc                        <  2:1658031/93‑1 (MQ=255)

                                                                  gAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACg                       <  2:580094/93‑1 (MQ=255)

                                                                  gAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACg                       >  1:105405/1‑93 (MQ=255)

                                                                   aaCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACgg                      >  2:4551232/1‑93 (MQ=255)

                                                                    aCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGt                     >  2:1751029/1‑93 (MQ=255)

                                                                    aCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGt                     >  1:3452413/1‑93 (MQ=255)

                                                                    aCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGt                     >  2:4260517/1‑93 (MQ=255)

                                                                    aCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGt                     >  2:3131186/1‑93 (MQ=255)

                                                                     cATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTa                    <  1:594761/93‑1 (MQ=255)

                                                                     aaTCGATCTCGTCTTGTGTTATTATTCTAACCTACGGTTTCAACAACCCATCCAGTTTCCCCAGGTAGGCCGGCATCGATGTGACCGACGGTa                    <  2:5024564/92‑1 (MQ=255)

                                                                      aTCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCATTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAc                   <  2:3385653/93‑1 (MQ=255)

                                                                      aTCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAc                   >  2:2567169/1‑93 (MQ=255)

                                                                      aTCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAc                   >  2:6383160/1‑93 (MQ=255)

                                                                      aTCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAc                   >  2:2674775/1‑93 (MQ=255)

                                                                        cGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACgt                 <  1:446254/93‑1 (MQ=255)

                                                                        cGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACgt                 <  2:4450320/93‑1 (MQ=255)

                                                                         gATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACgtg                >  1:1987703/1‑93 (MQ=255)

                                                                           tctcGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCAGCCAGTTGACCCAGGTAGACCAGCATCGATTTGACCGACGGTACggggt              <  2:3943418/93‑1 (MQ=255)

                                                                             tcGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGtggtgg            <  1:5316146/93‑1 (MQ=255)

                                                                                 cTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTaaa        >  1:5254307/1‑93 (MQ=255)

                                                                                 cTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTaaa        <  1:1807062/93‑1 (MQ=255)

                                                                                  ttGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAg       >  2:6138182/1‑93 (MQ=255)

                                                                                   tgtgTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGa      <  2:4309051/93‑1 (MQ=255)

                                                                                    gtgtTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGaa     <  1:4058807/93‑1 (MQ=255)

                                                                                      gtTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATg   <  1:748545/93‑1 (MQ=255)

                                                                                      gtTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATg   <  1:1974574/93‑1 (MQ=255)

                                                                                       ttATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATgg  >  2:1603545/1‑93 (MQ=255)

                                                                                       ttATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATgg  >  1:4875301/1‑93 (MQ=255)

CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAGAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG  >  NC_000913/4614148‑4614327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAGAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTCAG  >  NC_000913/4614145‑4614331

GGCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAT                                                                                               <  SRR4302537.1800248/94‑1 (MQ=60)

GGCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAT                                                                                               <  SRR4302537.1800249/94‑1 (MQ=60)

GGCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAT                                                                                               <  SRR4302537.4259254/94‑1 (MQ=60)

 GCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATA                                                                                              <  SRR4302537.1997382/94‑1 (MQ=60)

 GCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATA                                                                                              >  SRR4302537.4211925/1‑94 (MQ=60)

  CCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAA                                                                                             >  SRR4302537.7094/1‑94 (MQ=60)

  CCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAA                                                                                             <  SRR4302537.4888947/94‑1 (MQ=60)

   CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAT                                                                                            >  SRR4302537.1033093/1‑94 (MQ=60)

   CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAT                                                                                            >  SRR4302537.2579499/1‑94 (MQ=60)

   CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAT                                                                                            <  SRR4302537.5700344/94‑1 (MQ=60)

   CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAT                                                                                            >  SRR4302537.5012402/1‑94 (MQ=60)

    GATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATT                                                                                           <  SRR4302537.6365083/94‑1 (MQ=60)

     ATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTC                                                                                          >  SRR4302537.4376154/1‑94 (MQ=60)

     ATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTC                                                                                          >  SRR4302537.4063030/1‑94 (MQ=60)

     ATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTAGAACATCGATCTCGTCTTGTGTTATAATTC                                                                                          >  SRR4302537.4376155/1‑94 (MQ=60)

      TATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCT                                                                                         <  SRR4302537.4656292/94‑1 (MQ=60)

      TATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCT                                                                                         >  SRR4302537.568762/1‑94 (MQ=60)

      TATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCT                                                                                         <  SRR4302537.2206974/94‑1 (MQ=60)

          TGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACA                                                                                     <  SRR4302537.151540/94‑1 (MQ=60)

          GGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACA                                                                                     <  SRR4302537.3593175/94‑1 (MQ=60)

          GGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACA                                                                                     <  SRR4302537.5013088/94‑1 (MQ=60)

           GCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACAT                                                                                    <  SRR4302537.16702/94‑1 (MQ=60)

            CGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATA                                                                                   <  SRR4302537.2394568/94‑1 (MQ=60)

              TGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACG                                                                                 >  SRR4302537.6052056/1‑94 (MQ=60)

               GCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGG                                                                                >  SRR4302537.3641422/1‑94 (MQ=60)

               GCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGG                                                                                <  SRR4302537.3175991/94‑1 (MQ=60)

               GCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGG                                                                                <  SRR4302537.1340289/94‑1 (MQ=60)

                GATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGT                                                                               <  SRR4302537.6250205/94‑1 (MQ=60)

                CATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGT                                                                               <  SRR4302537.2670917/94‑1 (MQ=60)

                CATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGT                                                                               <  SRR4302537.855364/94‑1 (MQ=60)

                 ATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTT                                                                              <  SRR4302537.1640552/94‑1 (MQ=60)

                 ATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTT                                                                              <  SRR4302537.635914/94‑1 (MQ=60)

                  TAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTG                                                                             <  SRR4302537.2253052/94‑1 (MQ=60)

                  TAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTG                                                                             <  SRR4302537.1040146/94‑1 (MQ=60)

                  TAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTG                                                                             <  SRR4302537.5667716/94‑1 (MQ=60)

                  TAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTATAACATACGGTTG                                                                             <  SRR4302537.3143397/94‑1 (MQ=60)

                    AAGGCGTCTGGCAGGGTTCTGCCGAGGTAACGCCACAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTCTAATTTTAACATACGGTTGCA                                                                           >  SRR4302537.107758/1‑94 (MQ=60)

                     AGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAA                                                                          <  SRR4302537.6427712/94‑1 (MQ=60)

                        CGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAA                                                                       >  SRR4302537.5073558/1‑94 (MQ=60)

                         GTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAAC                                                                      >  SRR4302537.1465482/1‑94 (MQ=60)

                         GTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAAC                                                                      >  SRR4302537.1408545/1‑94 (MQ=60)

                         GTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAAC                                                                      <  SRR4302537.1170930/94‑1 (MQ=60)

                         GTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGGTGCAAAAAC                                                                      >  SRR4302537.5677149/1‑94 (MQ=60)

                            TGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCA                                                                   <  SRR4302537.3873110/94‑1 (MQ=60)

                            TGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCA                                                                   <  SRR4302537.879368/94‑1 (MQ=60)

                             GGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCAT                                                                  <  SRR4302537.3123214/94‑1 (MQ=60)

                                AGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCA                                                               >  SRR4302537.1750400/1‑94 (MQ=60)

                                 GGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAG                                                              <  SRR4302537.2315204/94‑1 (MQ=60)

                                  GGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGT                                                             <  SRR4302537.4487463/94‑1 (MQ=60)

                                  GGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGT                                                             <  SRR4302537.5881339/94‑1 (MQ=60)

                                    TTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTG                                                           <  SRR4302537.5565015/94‑1 (MQ=60)

                                    TTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTG                                                           >  SRR4302537.1352317/1‑94 (MQ=60)

                                    TTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTG                                                           >  SRR4302537.624283/1‑94 (MQ=60)

                                    TTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACCGTTGCAACAACGCATCCAGTTG                                                           <  SRR4302537.6464793/94‑1 (MQ=60)

                                     TCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGC                                                          <  SRR4302537.2067119/94‑1 (MQ=60)

                                     TCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGC                                                          >  SRR4302537.25529/1‑94 (MQ=60)

                                         TCGAGGTAACGCCAGAAACGTTTTATTCGAACATCTATCTCGTCTTGTGTTATAATGCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCA                                                      <  SRR4302537.3315521/94‑1 (MQ=60)

                                          CGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAG                                                     >  SRR4302537.6053225/1‑94 (MQ=60)

                                           GAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGG                                                    <  SRR4302537.2154103/94‑1 (MQ=60)

                                           GAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGG                                                    >  SRR4302537.4142504/1‑94 (MQ=60)

                                            AGGTAACGCCAGAAACGTTTTGTTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGT                                                   <  SRR4302537.4649140/94‑1 (MQ=60)

                                            AGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGT                                                   <  SRR4302537.3507795/94‑1 (MQ=60)

                                             GGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTA                                                  <  SRR4302537.84347/94‑1 (MQ=60)

                                             GGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTA                                                  <  SRR4302537.2329338/94‑1 (MQ=60)

                                               TAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGA                                                <  SRR4302537.4340465/94‑1 (MQ=60)

                                                AACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAC                                               >  SRR4302537.4294162/1‑94 (MQ=60)

                                                 ACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACC                                              <  SRR4302537.4836453/94‑1 (MQ=60)

                                                 ACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACC                                              <  SRR4302537.3041769/94‑1 (MQ=60)

                                                  CGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCG                                             >  SRR4302537.3657922/1‑94 (MQ=60)

                                                      AGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCAT                                         >  SRR4302537.1066112/1‑94 (MQ=60)

                                                      AGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCAT                                         >  SRR4302537.5788202/1‑94 (MQ=60)

                                                      AGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCAT                                         >  SRR4302537.1974925/1‑94 (MQ=60)

                                                      AGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCAT                                         >  SRR4302537.2157151/1‑94 (MQ=60)

                                                       GAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATC                                        <  SRR4302537.2280253/94‑1 (MQ=60)

                                                        AAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCG                                       <  SRR4302537.3275625/94‑1 (MQ=60)

                                                        AAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCG                                       <  SRR4302537.5381593/94‑1 (MQ=60)

                                                         AACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGA                                      >  SRR4302537.3886887/1‑94 (MQ=60)

                                                          ACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAT                                     <  SRR4302537.4610590/94‑1 (MQ=60)

                                                          ACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAT                                     >  SRR4302537.5872688/1‑94 (MQ=60)

                                                          ACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAT                                     <  SRR4302537.5574994/94‑1 (MQ=60)

                                                           CGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATG                                    >  SRR4302537.564506/1‑94 (MQ=60)

                                                            GTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGT                                   >  SRR4302537.5273763/1‑94 (MQ=60)

                                                             TTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTG                                  <  SRR4302537.1709741/94‑1 (MQ=60)

                                                               TTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGAC                                >  SRR4302537.3892407/1‑94 (MQ=60)

                                                               TTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGAC                                >  SRR4302537.3792437/1‑94 (MQ=60)

                                                                TATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACC                               >  SRR4302537.5434666/1‑94 (MQ=60)

                                                                TATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACC                               >  SRR4302537.5791649/1‑94 (MQ=60)

                                                                 ATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCG                              >  SRR4302537.6230603/1‑94 (MQ=60)

                                                                  TTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGA                             >  SRR4302537.2913279/1‑94 (MQ=60)

                                                                    CGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACG                           >  SRR4302537.106162/1‑94 (MQ=60)

                                                                    CGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACG                           >  SRR4302537.1989191/1‑94 (MQ=60)

                                                                     GAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGG                          >  SRR4302537.6359824/1‑94 (MQ=60)

                                                                      AACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGT                         >  SRR4302537.2139304/1‑94 (MQ=60)

                                                                      AACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGT                         >  SRR4302537.3476829/1‑94 (MQ=60)

                                                                        CATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAC                       <  SRR4302537.1670228/94‑1 (MQ=60)

                                                                        CATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAC                       >  SRR4302537.2199040/1‑94 (MQ=60)

                                                                        CATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAC                       <  SRR4302537.598830/94‑1 (MQ=60)

                                                                         ATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACG                      >  SRR4302537.4882044/1‑94 (MQ=60)

                                                                          TCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGT                     <  SRR4302537.1663884/94‑1 (MQ=60)

                                                                           CGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTG                    <  SRR4302537.449350/94‑1 (MQ=60)

                                                                           CGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTG                    >  SRR4302537.2758915/1‑94 (MQ=60)

                                                                           CGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTG                    <  SRR4302537.5130492/94‑1 (MQ=60)

                                                                           CGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTG                    >  SRR4302537.2001523/1‑94 (MQ=60)

                                                                            GATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGG                   >  SRR4302537.4692213/1‑94 (MQ=60)

                                                                             ATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGT                  <  SRR4302537.1746708/94‑1 (MQ=60)

                                                                             ATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGG                  >  SRR4302537.6231310/1‑94 (MQ=60)

                                                                              TCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTG                 >  SRR4302537.1411114/1‑94 (MQ=60)

                                                                              TCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTG                 >  SRR4302537.1793362/1‑94 (MQ=60)

                                                                               CTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGG                >  SRR4302537.2417388/1‑94 (MQ=60)

                                                                                TCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGT               <  SRR4302537.5352651/94‑1 (MQ=60)

                                                                                 CGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTA              <  SRR4302537.4758463/94‑1 (MQ=60)

                                                                                   TCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAGCGGCATCGATGTGACCGACGGTACGTGGTGGGAAA            >  SRR4302537.1710769/1‑94 (MQ=60)

                                                                                   TCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAA            <  SRR4302537.2890119/94‑1 (MQ=60)

                                                                                   TCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAA            >  SRR4302537.5290462/1‑94 (MQ=60)

                                                                                    CTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAG           <  SRR4302537.1791850/94‑1 (MQ=60)

                                                                                    CTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAG           <  SRR4302537.1819668/94‑1 (MQ=60)

                                                                                     TTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGTCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGA          <  SRR4302537.6465964/94‑1 (MQ=60)

                                                                                     TTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGA          >  SRR4302537.2661653/1‑94 (MQ=60)

                                                                                     TTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGA          <  SRR4302537.131063/94‑1 (MQ=60)

                                                                                      TGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAA         <  SRR4302537.6200493/94‑1 (MQ=60)

                                                                                       GTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAAT        <  SRR4302537.4087173/94‑1 (MQ=60)

                                                                                       GTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAAT        >  SRR4302537.6028205/1‑94 (MQ=60)

                                                                                       GTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAAT        <  SRR4302537.3465411/94‑1 (MQ=60)

                                                                                       GTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAAT        <  SRR4302537.1084996/94‑1 (MQ=60)

                                                                                        TGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATG       <  SRR4302537.350456/94‑1 (MQ=60)

                                                                                         GTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG      <  SRR4302537.1821466/94‑1 (MQ=60)

                                                                                         GTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG      >  SRR4302537.4908953/1‑94 (MQ=60)

                                                                                         GTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG      <  SRR4302537.790726/94‑1 (MQ=60)

                                                                                         GTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG      <  SRR4302537.753651/94‑1 (MQ=60)

                                                                                         GTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG      <  SRR4302537.5335373/94‑1 (MQ=60)

                                                                                         GTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG      <  SRR4302537.1988300/94‑1 (MQ=60)

                                                                                          TTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGT     <  SRR4302537.1335037/94‑1 (MQ=60)

                                                                                          TTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGT     <  SRR4302537.4150961/94‑1 (MQ=60)

                                                                                          TTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGT     >  SRR4302537.5328386/1‑94 (MQ=60)

                                                                                           TATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTC    <  SRR4302537.1515182/94‑1 (MQ=60)

                                                                                           TATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTC    >  SRR4302537.4115042/1‑94 (MQ=60)

                                                                                           TATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTC    >  SRR4302537.4036522/1‑94 (MQ=60)

                                                                                           TATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTC    <  SRR4302537.6180641/94‑1 (MQ=60)

                                                                                            ATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTCA   <  SRR4302537.1307823/94‑1 (MQ=60)

                                                                                             TAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTTGTGGTAAAGAATGGTCAG  >  SRR4302537.3044550/1‑94 (MQ=60)

                                                                                             TAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTCAG  <  SRR4302537.530980/94‑1 (MQ=60)

GGCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAGAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTCAG  >  NC_000913/4614145‑4614331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`