Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,701,551 |
T→C |
Q178R (CAG→CGG) |
rnc ← |
RNase III |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,701,551 | 0 | T | C | 88.5%
| 739.4
/ 80.9
| 286 | Q178R (CAG→CGG) | rnc | RNase III |
| Reads supporting (aligned to +/- strand): ref base T (13/20); new base C (110/143); total (123/163) |
| Fisher's exact test for biased strand distribution p-value = 7.11e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.85e-01 |
Only 100 of 287 total aligned reads displayed.
CGGCTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGGGCTA > NC_000913/2701461‑2701643
|
aaCCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCa > 1:38608/1‑93 (MQ=255)
aaCCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCa < 1:3956056/93‑1 (MQ=255)
gccTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAg > 1:4870840/2‑93 (MQ=255)
ccTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGa < 2:271931/93‑1 (MQ=255)
tgtgCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATa < 1:675374/93‑1 (MQ=255)
gtgCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATaa < 2:5769214/93‑1 (MQ=255)
gtgCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATaa < 1:6492168/93‑1 (MQ=255)
gtgCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATaa < 1:1071204/93‑1 (MQ=255)
tgCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAg > 1:3156682/1‑93 (MQ=255)
tgCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAg < 2:2104139/93‑1 (MQ=255)
aaCCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcgg > 2:613722/1‑93 (MQ=255)
accaccGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggc > 1:2706145/1‑93 (MQ=255)
caccGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcag > 1:4199002/1‑93 (MQ=255)
accGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagc > 1:720575/1‑93 (MQ=255)
accGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagc < 2:3317171/93‑1 (MQ=255)
accGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagc > 2:5094877/1‑93 (MQ=255)
accGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagc < 2:748859/93‑1 (MQ=255)
ccGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagcg > 1:4110682/1‑93 (MQ=255)
cGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagcgg > 1:4984810/1‑93 (MQ=255)
cGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagcgg < 1:3902999/93‑1 (MQ=255)
ggTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagcggc > 1:2254602/1‑93 (MQ=255)
gTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagcggca < 2:2438238/93‑1 (MQ=255)
gTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagcggca < 2:522573/93‑1 (MQ=255)
gTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTcggcagcggca > 1:1570764/1‑93 (MQ=255)
cTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATgg > 1:3800695/1‑93 (MQ=255)
cAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTAACAGATAAGTCGGCAGCGGCAGATGGCg < 1:5647485/93‑1 (MQ=255)
aGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGa < 2:3123157/93‑1 (MQ=255)
aGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGa < 2:1924770/93‑1 (MQ=255)
aGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGa < 1:5595033/93‑1 (MQ=255)
aGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGa < 2:651260/93‑1 (MQ=255)
ggCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGAc < 2:2593099/93‑1 (MQ=255)
ggCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGAc > 2:5611624/1‑93 (MQ=255)
ggCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGAc > 1:5541074/1‑93 (MQ=255)
gCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGAcc < 2:3803975/93‑1 (MQ=255)
ccGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGAccc < 1:6639176/93‑1 (MQ=255)
ccGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGAccc < 2:16470/93‑1 (MQ=255)
cGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCt > 2:2262197/1‑93 (MQ=255)
gCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTg > 2:1106651/1‑93 (MQ=255)
cTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGc < 2:250498/93‑1 (MQ=255)
cTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGc < 1:4385134/93‑1 (MQ=255)
aCCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCaaa < 2:4072382/93‑1 (MQ=255)
aCCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCaaa < 1:2609524/93‑1 (MQ=255)
ccTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAat > 2:2768235/1‑93 (MQ=255)
cTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAata > 2:5470186/1‑93 (MQ=255)
tGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAatat < 2:1954231/93‑1 (MQ=255)
tGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAatat > 2:4530440/1‑93 (MQ=255)
gCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTc < 2:4323907/93‑1 (MQ=255)
gCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTc > 2:2517850/1‑93 (MQ=255)
gTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTg > 2:1530434/1‑93 (MQ=255)
tGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGc > 1:1089813/1‑93 (MQ=255)
ggATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCa > 1:6066770/1‑93 (MQ=255)
gATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCaa > 2:1271860/1‑93 (MQ=255)
aTAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAg < 2:3614624/93‑1 (MQ=255)
tAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAgc < 2:5342331/93‑1 (MQ=255)
aGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAgcg > 1:2029265/1‑93 (MQ=255)
gTAAATTCCTGATCGTGCGCTTCGCTACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAgcgc < 1:4695108/93‑1 (MQ=255)
tAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGcgcg > 1:6309713/1‑93 (MQ=255)
aaaTTCCTGATCGTGCGCTTCGCCGCGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGt < 2:6997918/93‑1 (MQ=255)
aaaTTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGt < 2:1712280/93‑1 (MQ=255)
aaTTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGtt > 1:1016041/1‑93 (MQ=255)
ttCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGtttt > 1:1332310/1‑93 (MQ=255)
ttCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGtttt > 2:3957666/1‑93 (MQ=255)
tCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTc < 1:3441721/93‑1 (MQ=255)
tCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTc < 1:2954911/93‑1 (MQ=255)
cTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCgg > 1:36828/1‑93 (MQ=255)
cTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCgg < 1:694098/93‑1 (MQ=255)
tGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGa < 1:1708101/93‑1 (MQ=255)
tGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGa < 1:865190/93‑1 (MQ=255)
gATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGAt < 2:6660797/93‑1 (MQ=255)
gATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGAt < 1:6443009/93‑1 (MQ=255)
gATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGAt > 1:5144794/1‑93 (MQ=255)
gATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGAt < 2:4195846/93‑1 (MQ=255)
tCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCt > 2:63279/1‑93 (MQ=255)
tCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCt < 2:5868011/93‑1 (MQ=255)
tGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCtttt > 1:2851950/1‑93 (MQ=255)
tGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCtttt < 1:6134610/93‑1 (MQ=255)
tGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCtttt < 1:1370296/93‑1 (MQ=255)
gcTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGt > 2:7250740/1‑93 (MQ=255)
gcTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGt < 1:7503430/93‑1 (MQ=255)
gcTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGt < 2:1573628/93‑1 (MQ=255)
gcTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGt > 1:4061404/1‑93 (MQ=255)
gcTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGt > 1:7326582/1‑93 (MQ=255)
gcTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGt > 2:2988488/1‑93 (MQ=255)
gcTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGt > 2:3199456/1‑93 (MQ=255)
ttCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGttt < 1:4541238/93‑1 (MQ=255)
tCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTa < 2:1468023/93‑1 (MQ=255)
cGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTAt < 2:3902246/93‑1 (MQ=255)
cGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTAt < 2:3405724/93‑1 (MQ=255)
gCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATc < 1:3527942/93‑1 (MQ=255)
gCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATc > 1:5366135/1‑93 (MQ=255)
gCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATc < 2:6062033/93‑1 (MQ=255)
cACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGc > 2:2368898/1‑93 (MQ=255)
aCGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGcc > 2:1341030/1‑93 (MQ=255)
cGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCt < 1:1446172/93‑1 (MQ=255)
cGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCt < 1:2210805/93‑1 (MQ=255)
gTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGcccg > 1:2417312/1‑91 (MQ=255)
tACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTgg > 1:3929455/1‑93 (MQ=255)
tACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTgg > 1:5850382/1‑93 (MQ=255)
tACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTgg < 2:7059625/93‑1 (MQ=255)
tGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGGGCTa < 2:4870840/93‑1 (MQ=255)
|
CGGCTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGGGCTA > NC_000913/2701461‑2701643
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGACGGCTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGGGCT > NC_000913/2701458‑2701642
|
CGACGGCTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCC < SRR4302542.2314245/94‑1 (MQ=60)
CGACGGCTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCC > SRR4302542.7365913/1‑94 (MQ=60)
CGGCTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGA > SRR4302542.4137692/1‑94 (MQ=60)
GGCTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGAC < SRR4302542.3860989/94‑1 (MQ=60)
GGCTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGAC < SRR4302542.3948677/94‑1 (MQ=60)
CTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTA > SRR4302542.4501548/1‑94 (MQ=60)
CTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTA > SRR4302542.5017370/1‑94 (MQ=60)
GAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCA < SRR4302542.5069367/94‑1 (MQ=60)
GAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCA > SRR4302542.38952/1‑94 (MQ=60)
AGCCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAG > SRR4302542.4918253/1‑94 (MQ=60)
AACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAG < SRR4302542.3995112/94‑1 (MQ=60)
CTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATA > SRR4302542.4604347/1‑94 (MQ=60)
TGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAA < SRR4302542.681207/94‑1 (MQ=60)
GTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAG < SRR4302542.5322931/94‑1 (MQ=60)
GTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAG < SRR4302542.6556138/94‑1 (MQ=60)
GTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAG > SRR4302542.3186654/1‑94 (MQ=60)
GTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAG < SRR4302542.1080406/94‑1 (MQ=60)
TGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGT < SRR4302542.6509316/94‑1 (MQ=60)
TGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGT < SRR4302542.2815232/94‑1 (MQ=60)
TGCCAACCACCGGTTCACACAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGT < SRR4302542.4046067/94‑1 (MQ=60)
GCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTC < SRR4302542.778927/94‑1 (MQ=60)
AACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGC < SRR4302542.752025/94‑1 (MQ=60)
AACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGC > SRR4302542.2732249/1‑94 (MQ=60)
AACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGC < SRR4302542.6860857/94‑1 (MQ=60)
ACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCA < SRR4302542.2241716/94‑1 (MQ=60)
CCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAG > SRR4302542.4240402/1‑94 (MQ=60)
CACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGC > SRR4302542.726787/1‑94 (MQ=60)
CACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGC < SRR4302542.2887530/94‑1 (MQ=60)
CACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGC > SRR4302542.6365956/1‑94 (MQ=60)
ACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCG > SRR4302542.4151201/1‑94 (MQ=60)
CCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGG < SRR4302542.2167921/94‑1 (MQ=60)
CCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGG < SRR4302542.3636265/94‑1 (MQ=60)
CCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGG > SRR4302542.5033180/1‑94 (MQ=60)
CGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGC < SRR4302542.3941523/94‑1 (MQ=60)
CGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGC > SRR4302542.2686383/1‑94 (MQ=60)
CGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGC > SRR4302542.2273986/1‑94 (MQ=60)
GGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCA > SRR4302542.1584330/1‑94 (MQ=60)
GGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCA > SRR4302542.6151165/1‑94 (MQ=60)
GTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAG < SRR4302542.1399115/94‑1 (MQ=60)
GTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAG > SRR4302542.3975555/1‑94 (MQ=60)
GTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAG > SRR4302542.1083985/1‑94 (MQ=60)
TTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGA > SRR4302542.6128972/1‑94 (MQ=60)
TCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGAT < SRR4302542.263122/94‑1 (MQ=60)
TCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGAT < SRR4302542.2345039/94‑1 (MQ=60)
CACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATG > SRR4302542.731967/1‑94 (MQ=60)
CACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATG < SRR4302542.4857330/94‑1 (MQ=60)
ACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGG > SRR4302542.4938075/1‑94 (MQ=60)
ACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGG > SRR4302542.3894860/1‑94 (MQ=60)
ACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGG > SRR4302542.3838319/1‑94 (MQ=60)
CTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGC < SRR4302542.4275976/94‑1 (MQ=60)
TCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCG < SRR4302542.4503432/94‑1 (MQ=60)
CAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGA > SRR4302542.3536401/1‑94 (MQ=60)
CAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTAACAGATAAGTCGGCAGCGGCAGATGGCGA < SRR4302542.5702327/94‑1 (MQ=60)
AGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGAC < SRR4302542.5649396/94‑1 (MQ=60)
AGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGAC < SRR4302542.5649395/94‑1 (MQ=60)
AGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGAC > SRR4302542.5594934/1‑94 (MQ=60)
GGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACC > SRR4302542.7277102/1‑94 (MQ=60)
GCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCC < SRR4302542.3540895/94‑1 (MQ=60)
CCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGgctccct > SRR4302542.4151965/1‑87 (MQ=60)
CCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCT < SRR4302542.2565254/94‑1 (MQ=60)
CCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCT < SRR4302542.6704614/94‑1 (MQ=60)
CCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCT < SRR4302542.1093576/94‑1 (MQ=60)
CGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTG < SRR4302542.4099627/94‑1 (MQ=60)
CTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCA < SRR4302542.5665807/94‑1 (MQ=60)
CTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCA > SRR4302542.2333195/1‑94 (MQ=60)
CTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCA < SRR4302542.4428159/94‑1 (MQ=60)
CTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCA > SRR4302542.3310000/1‑94 (MQ=60)
TGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAA > SRR4302542.1050793/1‑94 (MQ=60)
ACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAAT < SRR4302542.2634753/94‑1 (MQ=60)
ACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAAT > SRR4302542.3776453/1‑94 (MQ=60)
CCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATA > SRR4302542.3899952/1‑94 (MQ=60)
CTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATAT < SRR4302542.2883482/94‑1 (MQ=60)
GGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTC < SRR4302542.5897046/94‑1 (MQ=60)
GGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTC < SRR4302542.413979/94‑1 (MQ=60)
GCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCT < SRR4302542.5793157/94‑1 (MQ=60)
CAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTT < SRR4302542.6656335/94‑1 (MQ=60)
CAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTT > SRR4302542.1766969/1‑94 (MQ=60)
AGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTG < SRR4302542.1567502/94‑1 (MQ=60)
GTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGC < SRR4302542.6387468/94‑1 (MQ=60)
GTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGC > SRR4302542.1099153/1‑94 (MQ=60)
TGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCA > SRR4302542.6409920/1‑94 (MQ=60)
TGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCA > SRR4302542.4218421/1‑94 (MQ=60)
TGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCA > SRR4302542.6125526/1‑94 (MQ=60)
TGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCA > SRR4302542.4383541/1‑94 (MQ=60)
GGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAA > SRR4302542.5587404/1‑94 (MQ=60)
GATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAG < SRR4302542.4231459/94‑1 (MQ=60)
TAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCG > SRR4302542.2046821/1‑94 (MQ=60)
AGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGC < SRR4302542.3725530/94‑1 (MQ=60)
AGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGC < SRR4302542.6733977/94‑1 (MQ=60)
AGTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGC < SRR4302542.5610683/94‑1 (MQ=60)
GTAAATTCCTGATCGTGCGCTTCGCTACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCG < SRR4302542.4740946/94‑1 (MQ=60)
GTAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCG > SRR4302542.6371882/1‑94 (MQ=60)
TAAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGT < SRR4302542.856932/94‑1 (MQ=60)
AAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTT > SRR4302542.1024793/1‑94 (MQ=60)
AAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTT < SRR4302542.1131007/94‑1 (MQ=60)
AAATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTT > SRR4302542.3908485/1‑94 (MQ=60)
ATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTT < SRR4302542.1365884/94‑1 (MQ=60)
ATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTT > SRR4302542.1343786/1‑94 (MQ=60)
ATTCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTT < SRR4302542.5433949/94‑1 (MQ=60)
TTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTC < SRR4302542.1477856/94‑1 (MQ=60)
TCCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTC < SRR4302542.1221551/94‑1 (MQ=60)
TCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCG < SRR4302542.90554/94‑1 (MQ=60)
TCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCG < SRR4302542.3473941/94‑1 (MQ=60)
TCCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCG < SRR4302542.2983193/94‑1 (MQ=60)
CCTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGG > SRR4302542.37156/1‑94 (MQ=60)
CTGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGA < SRR4302542.700098/94‑1 (MQ=60)
TGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGAT < SRR4302542.872644/94‑1 (MQ=60)
TGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGAT > SRR4302542.5194808/1‑94 (MQ=60)
TGATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGAT < SRR4302542.1722942/94‑1 (MQ=60)
GATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATC < SRR4302542.6506460/94‑1 (MQ=60)
GATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATC < SRR4302542.6506459/94‑1 (MQ=60)
ATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCT > SRR4302542.7125997/1‑94 (MQ=60)
ATCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCT < SRR4302542.7470759/94‑1 (MQ=60)
TCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTT < SRR4302542.1441648/94‑1 (MQ=60)
TCGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTT < SRR4302542.539065/94‑1 (MQ=60)
CGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTT < SRR4302542.2688943/94‑1 (MQ=60)
CGTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTT > SRR4302542.4613458/1‑94 (MQ=60)
GTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTT > SRR4302542.2879359/1‑94 (MQ=60)
GTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTT < SRR4302542.6252338/94‑1 (MQ=60)
GTGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTT < SRR4302542.1649093/94‑1 (MQ=60)
TGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTT < SRR4302542.6193959/94‑1 (MQ=60)
TGCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTT < SRR4302542.1382143/94‑1 (MQ=60)
GCGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTG < SRR4302542.5691530/94‑1 (MQ=60)
CGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGT > SRR4302542.4101456/1‑94 (MQ=60)
CGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGT > SRR4302542.7398352/1‑94 (MQ=60)
CGCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGT > SRR4302542.1373872/1‑94 (MQ=60)
GCTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTT < SRR4302542.7577232/94‑1 (MQ=60)
CTTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCGAGCGCGTTTTCGGATCTTTTTGTTT > SRR4302542.5121565/1‑94 (MQ=60)
CTTCGCCACGCACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTT > SRR4302542.6941885/1‑94 (MQ=60)
TTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTA < SRR4302542.5943159/94‑1 (MQ=60)
TTCGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTA < SRR4302542.4585694/94‑1 (MQ=60)
TCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTAT < SRR4302542.1621596/94‑1 (MQ=60)
CGCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATC > SRR4302542.5418287/1‑94 (MQ=60)
GCCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCG < SRR4302542.3560915/94‑1 (MQ=60)
CCACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGC > SRR4302542.3151713/1‑94 (MQ=60)
CACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCC > SRR4302542.2155359/1‑94 (MQ=60)
ACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCT < SRR4302542.3958279/94‑1 (MQ=60)
ACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCT < SRR4302542.2265178/94‑1 (MQ=60)
ACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCT < SRR4302542.6807149/94‑1 (MQ=60)
ACGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCA < SRR4302542.3313773/94‑1 (MQ=60)
CGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTG < SRR4302542.1458649/94‑1 (MQ=60)
CGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTG < SRR4302542.2768238/94‑1 (MQ=60)
CGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTG < SRR4302542.2229833/94‑1 (MQ=60)
CGTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCCG > SRR4302542.2440812/1‑94 (MQ=60)
GTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGG < SRR4302542.3578312/94‑1 (MQ=60)
GTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGG > SRR4302542.5907124/1‑94 (MQ=60)
GTACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGG > SRR4302542.3968227/1‑94 (MQ=60)
TACCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGGG < SRR4302542.6681824/94‑1 (MQ=60)
CCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGGGCT > SRR4302542.1229657/1‑94 (MQ=60)
CCCGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGGGCT > SRR4302542.6158991/1‑94 (MQ=60)
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CGACGGCTTGAACCTGTGCCAACCACCGGTTCACTCAGGCCGCTGACCTGGCAGTGGATAGTAAATTCCTGATCGTGCGCTTCGCCACGTACCTGGACTACCAGATAAGTCGGCAGCGGCAGATGGCGACCCTGCAAATATTCTTGCAAGCGCGTTTTCGGATCTTTTTGTTTATCGCCTGGGCT > NC_000913/2701458‑2701642
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
