Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,115,116 +C coding (2013/2028 nt) b2974 ← putative endoglucanase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,115,1151.C99.7% 978.4 / ‑4.6 283coding (2014/2028 nt)b2974putative endoglucanase
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base C (136/146);  total (137/146)
Fisher's exact test for biased strand distribution p-value = 4.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 300 total aligned reads displayed.

GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCC  >  NC_000913/3115023‑3115202
                                                                                             |                                                                                       
gTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCAttt                                                                                          <  2:2939828/93‑1 (MQ=255)
 tttGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑c                                                                                        <  1:6041869/93‑1 (MQ=255)
 tttGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGCCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑c                                                                                        <  1:6214194/93‑1 (MQ=255)
  ttGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑cc                                                                                       >  1:1464029/1‑92 (MQ=255)
   tGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑cct                                                                                      <  1:6439455/93‑3 (MQ=255)
    gCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑cctg                                                                                     <  2:7043541/93‑4 (MQ=255)
    gCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑cctg                                                                                     <  2:1216000/93‑4 (MQ=255)
    gCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑cctg                                                                                     <  1:2056720/93‑4 (MQ=255)
     cTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑cctgc                                                                                    <  1:7189896/93‑5 (MQ=255)
       ggTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCgg                                                                                   >  2:1913770/1‑93 (MQ=255)
       ggTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCgg                                                                                   >  1:5641088/1‑93 (MQ=255)
         tATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGAt                                                                                 >  2:4824739/1‑93 (MQ=255)
          aTCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATc                                                                                <  2:4125673/93‑1 (MQ=255)
          aTCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATc                                                                                <  1:6946795/93‑1 (MQ=255)
             tGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCgag                                                                             >  1:7401641/1‑93 (MQ=255)
              gCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCgaga                                                                            <  2:1834350/93‑1 (MQ=255)
              gCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCgaga                                                                            >  1:5508866/1‑93 (MQ=255)
               cACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGAt                                                                           <  1:4691371/93‑1 (MQ=255)
                aCGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATc                                                                          <  1:1938702/93‑1 (MQ=255)
                 cGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCg                                                                         <  2:6288169/93‑1 (MQ=255)
                  gCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGc                                                                        <  2:6774514/93‑1 (MQ=255)
                   cAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGcc                                                                       >  1:4202854/1‑93 (MQ=255)
                     gCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCAt                                                                     >  2:2706622/1‑93 (MQ=255)
                     gCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCAt                                                                     >  1:7056566/1‑93 (MQ=255)
                      cGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATa                                                                    <  2:461557/93‑1 (MQ=255)
                      cGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATa                                                                    <  2:5136230/93‑1 (MQ=255)
                        ggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGc                                                                  >  2:928185/1‑93 (MQ=255)
                          aTTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTa                                                                <  2:7297729/93‑1 (MQ=255)
                           ttGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTAc                                                               >  1:789143/1‑93 (MQ=255)
                           ttGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTAc                                                               >  1:6836118/1‑93 (MQ=255)
                           ttGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTAc                                                               >  1:4020381/1‑93 (MQ=255)
                            tGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACt                                                              <  2:1978541/93‑1 (MQ=255)
                             gCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACtt                                                             >  2:2784786/1‑93 (MQ=255)
                              cATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTa                                                            >  2:1491491/1‑93 (MQ=255)
                              cATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTa                                                            >  2:5533492/1‑93 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGTGGATCGAGATCGCCATAGCTACTTaaa                                                          <  2:6416899/93‑1 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTaaa                                                          <  1:1335587/93‑1 (MQ=255)
                                 aaGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTaann                                                         >  1:3636844/1‑91 (MQ=255)
                                   ggATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGc                                                       <  1:3507661/93‑1 (MQ=255)
                                   ggATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGc                                                       <  2:309871/93‑1 (MQ=255)
                                    gATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCt                                                      >  2:1096911/1‑93 (MQ=255)
                                    gATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCt                                                      >  1:3767229/1‑93 (MQ=255)
                                     aTCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTc                                                     <  2:4522392/93‑1 (MQ=255)
                                     aTCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTc                                                     <  1:1790295/93‑1 (MQ=255)
                                      tCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCa                                                    >  1:524190/1‑93 (MQ=255)
                                      tCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCa                                                    >  1:2229664/1‑93 (MQ=255)
                                      tCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCa                                                    >  1:1211848/1‑93 (MQ=255)
                                      tCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCa                                                    >  1:3006286/1‑93 (MQ=255)
                                       cGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCaa                                                   <  1:6141767/93‑1 (MQ=255)
                                        gTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAAc                                                  >  1:431322/1‑93 (MQ=255)
                                        gTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAAc                                                  <  2:683737/93‑1 (MQ=255)
                                          tACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACag                                                <  1:2723436/93‑1 (MQ=255)
                                          tACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACag                                                <  1:3845165/93‑1 (MQ=255)
                                          tACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACag                                                <  2:740286/93‑1 (MQ=255)
                                           aCCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACaga                                               >  2:2169395/1‑93 (MQ=255)
                                           aCCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACaga                                               >  2:4916518/1‑93 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                             <  1:3159366/93‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                             <  2:5890076/93‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                             >  2:6149023/1‑93 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                             <  1:4477647/93‑1 (MQ=255)
                                              cACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAt                                            <  1:1990367/93‑1 (MQ=255)
                                              cACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAt                                            <  2:6701902/93‑1 (MQ=255)
                                                ccTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGc                                          <  2:2549985/93‑1 (MQ=255)
                                                ccTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGc                                          <  1:6174927/93‑1 (MQ=255)
                                                ccTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGc                                          >  2:1306669/1‑93 (MQ=255)
                                                ccTGAGTCACATATACAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGc                                          <  1:1595701/93‑1 (MQ=255)
                                                 cTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGcc                                         <  1:5808910/93‑1 (MQ=255)
                                                  tGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGccc                                        >  1:2371507/1‑93 (MQ=255)
                                                     gTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCa                                     >  1:6715154/1‑93 (MQ=255)
                                                     gTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCa                                     >  1:872629/1‑93 (MQ=255)
                                                      tCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCaa                                    >  2:6862484/1‑93 (MQ=255)
                                                       cacaTATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCaaa                                   <  2:3715812/93‑1 (MQ=255)
                                                        acaTATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCaaaa                                  >  1:2592801/1‑93 (MQ=255)
                                                        acaTATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCaaaa                                  <  1:5943156/93‑1 (MQ=255)
                                                        acaTATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCaaaa                                  >  1:3066201/1‑93 (MQ=255)
                                                          atatTCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATc                                >  2:2750945/1‑93 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                            <  2:2999001/93‑1 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                            <  1:2814070/93‑1 (MQ=255)
                                                               cAAAGCCGATAAGGATCAGCAGCTGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGAt                           <  1:4859716/93‑1 (MQ=255)
                                                                aaaGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATg                          <  1:1017117/93‑1 (MQ=255)
                                                                aaaGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATg                          >  2:5277497/1‑93 (MQ=255)
                                                                aaaGCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATg                          >  1:174087/1‑93 (MQ=255)
                                                                   gCCGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGaa                       >  1:625066/1‑93 (MQ=255)
                                                                    ccGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAg                      <  2:3388817/93‑1 (MQ=255)
                                                                     cGTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGt                     <  1:46061/93‑1 (MQ=255)
                                                                      gTTAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTc                    <  2:80236/93‑1 (MQ=255)
                                                                       ttAAGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCg                   >  2:3036192/1‑93 (MQ=255)
                                                                         aaGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGaa                 <  1:4974191/93‑1 (MQ=255)
                                                                          aGGATCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAAc                <  1:5409340/93‑1 (MQ=255)
                                                                             aTCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCa             <  1:324410/93‑1 (MQ=255)
                                                                             aTCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCa             <  2:5727316/93‑1 (MQ=255)
                                                                              tCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAg            >  1:6903975/1‑93 (MQ=255)
                                                                              tCAGCAGCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAg            <  2:4335032/93‑1 (MQ=255)
                                                                               cagcagCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgc           <  2:3527707/93‑1 (MQ=255)
                                                                               cagcagCGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgc           <  2:2277550/93‑1 (MQ=255)
                                                                                agcagcGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgcg          >  2:3304716/1‑93 (MQ=255)
                                                                                 gcagcGGCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgcgc         <  2:3491885/93‑1 (MQ=255)
                                                                                       gCATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTc   <  1:6640717/93‑1 (MQ=255)
                                                                                        cATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTcc  <  2:1513983/93‑1 (MQ=255)
                                                                                        cATTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTcc  >  2:3915145/1‑93 (MQ=255)
                                                                                             |                                                                                       
GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCC  >  NC_000913/3115023‑3115202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTAACC  >  NC_000913/3115024‑3115209
                                                                                              |                                                                                              
TTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CC                                                                                               <  SRR4302542.6100354/94‑1 (MQ=60)
TTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CC                                                                                               >  SRR4302542.1476667/1‑94 (MQ=60)
TTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGCCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CC                                                                                               <  SRR4302542.6275416/94‑1 (MQ=60)
 TTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑Cct                                                                                              >  SRR4302542.822062/1‑92 (MQ=60)
  TGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑Cctg                                                                                             <  SRR4302542.2275658/94‑4 (MQ=60)
  TGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑Cctg                                                                                             <  SRR4302542.6502885/94‑4 (MQ=60)
   GCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGC                                                                                             <  SRR4302542.2074493/94‑1 (MQ=60)
    CTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCG                                                                                            <  SRR4302542.7260442/94‑1 (MQ=60)
     TGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGG                                                                                           >  SRR4302542.5695868/1‑94 (MQ=60)
      GGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGA                                                                                          >  SRR4302542.6223234/1‑94 (MQ=60)
       GTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGAT                                                                                         <  SRR4302542.3246637/94‑1 (MQ=60)
        TATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATC                                                                                        <  SRR4302542.7594512/94‑1 (MQ=60)
        TATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATC                                                                                        <  SRR4302542.582406/94‑1 (MQ=60)
         ATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCG                                                                                       >  SRR4302542.6756650/1‑94 (MQ=60)
         ATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCG                                                                                       <  SRR4302542.7015051/94‑1 (MQ=60)
           CTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAG                                                                                     >  SRR4302542.7474073/1‑94 (MQ=60)
           CTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAG                                                                                     <  SRR4302542.6617408/94‑1 (MQ=60)
           CTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAG                                                                                     <  SRR4302542.3670333/94‑1 (MQ=60)
            TGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGA                                                                                    >  SRR4302542.5562401/1‑94 (MQ=60)
            TGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGA                                                                                    <  SRR4302542.2865897/94‑1 (MQ=60)
              CACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATC                                                                                  >  SRR4302542.112292/1‑94 (MQ=60)
              CACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATC                                                                                  <  SRR4302542.4737180/94‑1 (MQ=60)
              CACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATC                                                                                  <  SRR4302542.1261509/94‑1 (MQ=60)
               ACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCG                                                                                 <  SRR4302542.1955470/94‑1 (MQ=60)
               ACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCG                                                                                 <  SRR4302542.2906957/94‑1 (MQ=60)
               ACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCG                                                                                 <  SRR4302542.1798512/94‑1 (MQ=60)
                CGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGC                                                                                <  SRR4302542.4467559/94‑1 (MQ=60)
                CGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGC                                                                                >  SRR4302542.6866077/1‑94 (MQ=60)
                 GCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCC                                                                               >  SRR4302542.4244291/1‑94 (MQ=60)
                  CAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCA                                                                              >  SRR4302542.703740/1‑94 (MQ=60)
                   AGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCAT                                                                             <  SRR4302542.6307730/94‑1 (MQ=60)
                   AGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCAT                                                                             >  SRR4302542.1342396/1‑94 (MQ=60)
                   AGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCAT                                                                             >  SRR4302542.2709198/1‑94 (MQ=60)
                   AGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCAT                                                                             >  SRR4302542.7125834/1‑94 (MQ=60)
                     CGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAG                                                                           >  SRR4302542.5860538/1‑94 (MQ=60)
                      GGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGC                                                                          <  SRR4302542.3982648/94‑1 (MQ=60)
                      GGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGC                                                                          >  SRR4302542.5606035/1‑94 (MQ=60)
                        GATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTA                                                                        >  SRR4302542.3040428/1‑94 (MQ=60)
                        GATTGCAT‑AGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATTTT‑CTGCGGATCGAGATTGCCATAGCTta                                                                       >  SRR4302542.4638968/1‑92 (MQ=60)
                         ATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTAC                                                                       >  SRR4302542.3103898/1‑94 (MQ=60)
                         ATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTAC                                                                       >  SRR4302542.4060055/1‑94 (MQ=60)
                         ATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTAC                                                                       >  SRR4302542.3496604/1‑94 (MQ=60)
                         ATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTAC                                                                       >  SRR4302542.795942/1‑94 (MQ=60)
                         ATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTAC                                                                       >  SRR4302542.6903292/1‑94 (MQ=60)
                          TTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACT                                                                      >  SRR4302542.6770457/1‑94 (MQ=60)
                          TTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACT                                                                      <  SRR4302542.707471/94‑1 (MQ=60)
                              ATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAA                                                                  >  SRR4302542.6981225/1‑94 (MQ=60)
                               TAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAANN                                                                 >  SRR4302542.3670756/1‑94 (MQ=60)
                               TAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAAT                                                                 <  SRR4302542.2416361/94‑1 (MQ=60)
                               TAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAAT                                                                 <  SRR4302542.1347087/94‑1 (MQ=60)
                               TAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAAT                                                                 <  SRR4302542.3861476/94‑1 (MQ=60)
                                AAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATG                                                                <  SRR4302542.1405156/94‑1 (MQ=60)
                                AAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATG                                                                <  SRR4302542.6216427/94‑1 (MQ=60)
                                AAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATG                                                                >  SRR4302542.3263333/1‑94 (MQ=60)
                                  GGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCT                                                              <  SRR4302542.3540462/94‑1 (MQ=60)
                                  GGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCT                                                              >  SRR4302542.3804490/1‑94 (MQ=60)
                                   GATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTC                                                             <  SRR4302542.4822711/94‑1 (MQ=60)
                                    ATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCATCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCA                                                            <  SRR4302542.2778918/94‑1 (MQ=60)
                                    ATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCA                                                            <  SRR4302542.1805830/94‑1 (MQ=60)
                                    ATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCA                                                            >  SRR4302542.1222251/1‑94 (MQ=60)
                                    ATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCA                                                            >  SRR4302542.3035031/1‑94 (MQ=60)
                                    ATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCA                                                            >  SRR4302542.2652242/1‑94 (MQ=60)
                                    ATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCA                                                            >  SRR4302542.528721/1‑94 (MQ=60)
                                    ATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCA                                                            >  SRR4302542.2248850/1‑94 (MQ=60)
                                     TCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAA                                                           <  SRR4302542.3575210/94‑1 (MQ=60)
                                      CGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAAC                                                          <  SRR4302542.6201194/94‑1 (MQ=60)
                                      CGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAAC                                                          >  SRR4302542.4795548/1‑94 (MQ=60)
                                      CGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAAC                                                          >  SRR4302542.435057/1‑94 (MQ=60)
                                        TTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAG                                                        >  SRR4302542.6255486/1‑94 (MQ=60)
                                        TTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAG                                                        <  SRR4302542.1144761/94‑1 (MQ=60)
                                         TACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGA                                                       <  SRR4302542.3883168/94‑1 (MQ=60)
                                         TACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGA                                                       <  SRR4302542.2749714/94‑1 (MQ=60)
                                          ACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAG                                                      >  SRR4302542.1808036/1‑94 (MQ=60)
                                           CCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGA                                                     >  SRR4302542.1942415/1‑94 (MQ=60)
                                            CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                    <  SRR4302542.3189355/94‑1 (MQ=60)
                                            CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                    <  SRR4302542.4521603/94‑1 (MQ=60)
                                             CACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATG                                                   <  SRR4302542.2074366/94‑1 (MQ=60)
                                             CACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATG                                                   <  SRR4302542.2007540/94‑1 (MQ=60)
                                              ACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGC                                                  >  SRR4302542.4211004/1‑94 (MQ=60)
                                               CCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCC                                                 <  SRR4302542.5983089/94‑1 (MQ=60)
                                               CCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCC                                                 <  SRR4302542.6234784/94‑1 (MQ=60)
                                               CCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCC                                                 >  SRR4302542.2103527/1‑94 (MQ=60)
                                               CCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCC                                                 >  SRR4302542.743606/1‑94 (MQ=60)
                                               CCTGAGTCACATATACAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCC                                                 <  SRR4302542.1609486/94‑1 (MQ=60)
                                                CTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCC                                                <  SRR4302542.5865278/94‑1 (MQ=60)
                                                CTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCC                                                >  SRR4302542.2392366/1‑94 (MQ=60)
                                                CTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCC                                                >  SRR4302542.1960192/1‑94 (MQ=60)
                                                  GAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGC                                              <  SRR4302542.959864/94‑1 (MQ=60)
                                                   AGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCA                                             >  SRR4302542.880154/1‑94 (MQ=60)
                                                   AGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCA                                             <  SRR4302542.335592/94‑1 (MQ=60)
                                                   AGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCA                                             >  SRR4302542.6781296/1‑94 (MQ=60)
                                                    GTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAA                                            >  SRR4302542.6032305/1‑94 (MQ=60)
                                                      CACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAA                                          >  SRR4302542.3095438/1‑94 (MQ=60)
                                                      CACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAA                                          >  SRR4302542.2617911/1‑94 (MQ=60)
                                                       ACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAAT                                         <  SRR4302542.7486666/94‑1 (MQ=60)
                                                       ACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAAT                                         >  SRR4302542.3815042/1‑94 (MQ=60)
                                                       ACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAAT                                         <  SRR4302542.6000727/94‑1 (MQ=60)
                                                       ACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAAT                                         >  SRR4302542.309148/1‑94 (MQ=60)
                                                        CATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATC                                        >  SRR4302542.6143554/1‑94 (MQ=60)
                                                        CATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATC                                        >  SRR4302542.3162601/1‑94 (MQ=60)
                                                         ATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCC                                       <  SRR4302542.1570623/94‑1 (MQ=60)
                                                         ATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCC                                       >  SRR4302542.2169819/1‑94 (MQ=60)
                                                          TATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCG                                      >  SRR4302542.1495450/1‑94 (MQ=60)
                                                           ATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGG                                     >  SRR4302542.5880177/1‑94 (MQ=60)
                                                           ATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGG                                     <  SRR4302542.1686596/94‑1 (MQ=60)
                                                             TCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGAT                                   <  SRR4302542.2841147/94‑1 (MQ=60)
                                                             TCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGAT                                   <  SRR4302542.823036/94‑1 (MQ=60)
                                                             TCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGAT                                   <  SRR4302542.6934429/94‑1 (MQ=60)
                                                             TCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGAT                                   <  SRR4302542.4069860/94‑1 (MQ=60)
                                                              CAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATG                                  >  SRR4302542.5288300/1‑94 (MQ=60)
                                                              CAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATG                                  >  SRR4302542.6915186/1‑94 (MQ=60)
                                                              CAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATG                                  >  SRR4302542.175555/1‑94 (MQ=60)
                                                              CAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATG                                  >  SRR4302542.7145153/1‑94 (MQ=60)
                                                              CAAAGCCGATAAGGATCAGCAGCTGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATG                                  <  SRR4302542.4907046/94‑1 (MQ=60)
                                                               AAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGG                                 <  SRR4302542.6495844/94‑1 (MQ=60)
                                                               AAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGG                                 <  SRR4302542.1025878/94‑1 (MQ=60)
                                                                AAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGA                                >  SRR4302542.7241111/1‑94 (MQ=60)
                                                                 AGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAA                               >  SRR4302542.630448/1‑94 (MQ=60)
                                                                 AGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAA                               >  SRR4302542.5483024/1‑94 (MQ=60)
                                                                  GCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAG                              <  SRR4302542.2526997/94‑1 (MQ=60)
                                                                   CCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGT                             <  SRR4302542.6635428/94‑1 (MQ=60)
                                                                   CCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGT                             <  SRR4302542.6359704/94‑1 (MQ=60)
                                                                    CGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTC                            <  SRR4302542.46448/94‑1 (MQ=60)
                                                                    CGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTC                            <  SRR4302542.4704163/94‑1 (MQ=60)
                                                                    CGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTC                            >  SRR4302542.1804456/1‑94 (MQ=60)
                                                                    CGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTC                            <  SRR4302542.5008861/94‑1 (MQ=60)
                                                                    CGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTC                            >  SRR4302542.2800002/1‑94 (MQ=60)
                                                                    CGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTC                            <  SRR4302542.6185022/94‑1 (MQ=60)
                                                                     GTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCG                           >  SRR4302542.4581563/1‑94 (MQ=60)
                                                                     GTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCG                           >  SRR4302542.5620776/1‑94 (MQ=60)
                                                                       TAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAA                         >  SRR4302542.4938660/1‑94 (MQ=60)
                                                                        AAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAAC                        <  SRR4302542.2277021/94‑1 (MQ=60)
                                                                        AAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAAC                        >  SRR4302542.5378836/1‑94 (MQ=60)
                                                                        AAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAAC                        <  SRR4302542.5022480/94‑1 (MQ=60)
                                                                         AGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACG                       <  SRR4302542.5461878/94‑1 (MQ=60)
                                                                          GGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGC                      >  SRR4302542.5307657/1‑94 (MQ=60)
                                                                           GATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCA                     <  SRR4302542.4325462/94‑1 (MQ=60)
                                                                           GATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCA                     >  SRR4302542.4250365/1‑94 (MQ=60)
                                                                            ATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAG                    >  SRR4302542.6971757/1‑94 (MQ=60)
                                                                            ATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAG                    <  SRR4302542.327225/94‑1 (MQ=60)
                                                                              CAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCG                  <  SRR4302542.1652060/94‑1 (MQ=60)
                                                                                GCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑T               <  SRR4302542.4712856/94‑1 (MQ=60)
                                                                                GCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑T               <  SRR4302542.5223594/94‑1 (MQ=60)
                                                                                  AGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGT             >  SRR4302542.3742637/1‑94 (MQ=60)
                                                                                  AGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGT             >  SRR4302542.379427/1‑94 (MQ=60)
                                                                                  AGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGT             <  SRR4302542.4393601/94‑1 (MQ=60)
                                                                                  AGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGT             >  SRR4302542.5491103/1‑94 (MQ=60)
                                                                                   GCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTT            <  SRR4302542.2016474/94‑1 (MQ=60)
                                                                                   GCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTT            <  SRR4302542.1429347/94‑1 (MQ=60)
                                                                                    CGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTT           >  SRR4302542.4025774/1‑94 (MQ=60)
                                                                                     GGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTC          >  SRR4302542.6244845/1‑94 (MQ=60)
                                                                                     GGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGAT‑GAAGGCGAACGCAGCGCTTGTTTC          >  SRR4302542.1955872/1‑94 (MQ=60)
                                                                                      GCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCC         <  SRR4302542.6706172/94‑1 (MQ=60)
                                                                                      GCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCC         >  SRR4302542.6348188/1‑94 (MQ=60)
                                                                                      GCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCC         <  SRR4302542.6986703/94‑1 (MQ=60)
                                                                                       gcatctcCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCC         <  SRR4302542.6065039/87‑1 (MQ=60)
                                                                                       CA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCT        >  SRR4302542.4932584/1‑94 (MQ=60)
                                                                                       CA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCT        >  SRR4302542.5824553/1‑94 (MQ=60)
                                                                                       CA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCT        >  SRR4302542.5864962/1‑94 (MQ=60)
                                                                                       CA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCT        <  SRR4302542.6055552/94‑1 (MQ=60)
                                                                                        A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTT       >  SRR4302542.6286032/1‑94 (MQ=60)
                                                                                        A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTG       >  SRR4302542.5350222/1‑94 (MQ=60)
                                                                                        A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTG       >  SRR4302542.4004416/1‑94 (MQ=60)
                                                                                        A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTG       >  SRR4302542.4702106/1‑94 (MQ=60)
                                                                                        A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTG       >  SRR4302542.1718290/1‑94 (MQ=60)
                                                                                        A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAAAGCAGCGG‑TGTTTCCTT       >  SRR4302542.3688056/1‑94 (MQ=60)
                                                                                          TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGT      >  SRR4302542.5265666/1‑94 (MQ=60)
                                                                                          TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGT      <  SRR4302542.2596470/94‑1 (MQ=60)
                                                                                          TTC‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTA     <  SRR4302542.1645951/94‑1 (MQ=60)
                                                                                           TC‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTAA    >  SRR4302542.6703327/1‑94 (MQ=60)
                                                                                            C‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTAAC   >  SRR4302542.6553625/1‑94 (MQ=60)
                                                                                            C‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTAAC   >  SRR4302542.1690696/1‑94 (MQ=60)
                                                                                              CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTAACC  >  SRR4302542.3357852/1‑94 (MQ=60)
                                                                                              CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTAACC  <  SRR4302542.2211656/94‑1 (MQ=60)
                                                                                              CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTAACC  <  SRR4302542.6099065/94‑1 (MQ=60)
                                                                                              CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTAACC  <  SRR4302542.3319353/94‑1 (MQ=60)
                                                                                              |                                                                                              
TTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC‑TGTTTCCTGTAACC  >  NC_000913/3115024‑3115209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑