Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,130,334 |
A→G |
V30V (GTT→GTC) |
b2983 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,130,334 | 0 | A | G | 100.0%
| 944.9
/ NA
| 280 | V30V (GTT→GTC) | b2983 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (118/162); total (118/162) |
Only 100 of 289 total aligned reads displayed.
GATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACAACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAA > NC_000913/3130245‑3130423
|
gATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCacgaca > 2:1150272/1‑93 (MQ=255)
aTTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACAt < 1:2088784/93‑1 (MQ=255)
aTTGCACAACCACCAGTACGCCAAACAGGGCGGGCGTCATCCCTTTCCCGG‑CACACGAGAGCGCC‑AACAGCCCCAGCAG‑GGCGCTCGCGACAt < 1:187602/93‑1 (MQ=255)
ttGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACAtt > 2:3253013/1‑93 (MQ=255)
tGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTa < 1:3721329/93‑1 (MQ=255)
gCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTAc < 2:7263608/93‑1 (MQ=255)
gCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTAc < 1:3659389/93‑1 (MQ=255)
gCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCCG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTAc > 1:6980687/1‑93 (MQ=255)
acaATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTg < 1:6394100/93‑1 (MQ=255)
acaATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTg > 2:4271367/1‑93 (MQ=255)
aaTCACAAGTACGCAAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGCCCCAGCAA‑GGCGCTCACGACATTACTGGa < 1:3039222/93‑1 (MQ=255)
cccAGTCCGCAAAACAGGGCGGGCGTCATCCCTTTCCCGG‑CACACGAGAGCCCC‑AACAGCCCCAGCAG‑GGCGCTCACGACATTACTGGAGCCt < 1:6622501/92‑1 (MQ=255)
aCCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑AGCGCTCACGACATTACTGGAGCCt > 1:7253119/1‑93 (MQ=255)
ccAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTa > 1:2271853/1‑93 (MQ=255)
cAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTaa < 2:4614540/93‑1 (MQ=255)
aGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAAc > 2:2095567/1‑93 (MQ=255)
gCCAAACATGGCGGGCGTCATCCCTTTACCCG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGgc > 1:845652/1‑93 (MQ=255)
cAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGgcgc < 2:1829469/93‑1 (MQ=255)
aaaCATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCt > 2:2721823/1‑93 (MQ=255)
aCATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTAt > 2:3849563/1‑93 (MQ=255)
aTGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTg < 2:5344832/93‑1 (MQ=255)
aTGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTg > 1:6669156/1‑93 (MQ=255)
ggggggcgTCCCCCCTTTACCGG‑CAACGGGGGGCCCCAAACAGCCCCAGCAG‑GGCCCCCACGACATTACTGGAGCCTAACCAGGCGCTATTGc < 1:6431239/90‑1 (MQ=255)
ggcgggcgTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCg > 2:5816880/1‑93 (MQ=255)
ggcgggcgTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCg > 1:6240890/1‑93 (MQ=255)
cgggcgTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGCCCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGaa < 2:5615763/93‑1 (MQ=255)
cgggcgTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGaa < 2:7365232/93‑1 (MQ=255)
ggcgTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGaata < 2:3106971/93‑1 (MQ=255)
gcgTCATCCCTTTCCCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGaataa < 1:6487540/93‑1 (MQ=255)
ttcctCCCTTTCCCGG‑CACAGGAGAGCCCC‑AACAGCCCCAGCAG‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATg < 1:3878852/89‑1 (MQ=255)
tCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATgg > 1:2243148/1‑93 (MQ=255)
tCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATgg > 2:4462480/1‑93 (MQ=255)
tCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATgg < 1:4790199/93‑1 (MQ=255)
cATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGt < 1:2024755/93‑1 (MQ=255)
cATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGt < 2:7090103/93‑1 (MQ=255)
aTCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAAGCAGGCGCTATTGCGAATAATGGTg > 2:4786636/1‑93 (MQ=255)
tCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGc > 1:2473532/1‑93 (MQ=255)
tCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGc < 2:6037932/93‑1 (MQ=255)
cccTTTACCGGCCACCGGAGGCCCCA‑AACAG‑CCCAACAAGGGCCCCCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGc < 1:5210205/93‑1 (MQ=255)
cccTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCg > 2:4111450/1‑93 (MQ=255)
cccTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCg > 1:1480064/1‑93 (MQ=255)
ccTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGa < 2:1405533/93‑1 (MQ=255)
ccTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGa > 2:4665121/1‑93 (MQ=255)
cTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGaa > 2:292163/1‑93 (MQ=255)
cTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGaa > 2:6612843/1‑93 (MQ=255)
tttACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGaaa < 1:6153151/93‑1 (MQ=255)
tttACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGaaa > 2:3292132/1‑93 (MQ=255)
tttACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGaaa < 2:5432508/93‑1 (MQ=255)
ttACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAAc < 2:5736877/93‑1 (MQ=255)
ttACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAAc > 2:8071/1‑93 (MQ=255)
aCCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAAcgc < 1:3234161/93‑1 (MQ=255)
aCCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAAcgc > 1:2692471/1‑93 (MQ=255)
gg‑CACAGGAGAGCCCA‑AACAGCCCCAGAAG‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGcc < 1:1697042/93‑1 (MQ=255)
g‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCa < 2:4488398/93‑1 (MQ=255)
g‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCa < 2:5894785/93‑1 (MQ=255)
cacaCGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCAt > 2:911850/1‑93 (MQ=255)
cacaCGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCAt < 1:4478227/93‑1 (MQ=255)
acacGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATc < 1:1068359/93‑1 (MQ=255)
acacGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATc < 1:2978337/93‑1 (MQ=255)
acacGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATc > 1:674146/1‑93 (MQ=255)
acGAGAGCGCC‑AACAGCCCCACCAA‑GGCCCCCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTg < 1:2744538/93‑1 (MQ=255)
gagaGCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCCCCATCTGCa > 2:6288062/1‑93 (MQ=255)
agagCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCaa > 2:2678320/1‑93 (MQ=255)
agagCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCaa > 1:5575370/1‑93 (MQ=255)
agagCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCaa < 2:1197706/93‑1 (MQ=255)
agagCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCaa > 1:4744714/1‑93 (MQ=255)
gagCGCC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCaaa > 1:1305894/1‑93 (MQ=255)
gcgcC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAAcc < 2:1043391/93‑1 (MQ=255)
gcgcC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAAcc > 1:4628511/1‑93 (MQ=255)
gcC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCaa < 1:683860/93‑1 (MQ=255)
gcC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCaa < 1:7347567/93‑1 (MQ=255)
gcC‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCaa < 1:4885449/93‑1 (MQ=255)
ccc‑AACAGCCCCAGCAA‑GGCCCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCaa < 1:3980566/92‑1 (MQ=255)
cc‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAt < 2:742439/93‑1 (MQ=255)
cc‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAt > 1:4330405/1‑93 (MQ=255)
cc‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAt < 2:3600336/93‑1 (MQ=255)
c‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATg > 1:3175098/1‑93 (MQ=255)
c‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATg < 2:1542164/93‑1 (MQ=255)
c‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATg < 2:2987464/93‑1 (MQ=255)
c‑AACAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATg > 1:4427173/1‑93 (MQ=255)
aaCAGCCCCAGCAG‑GGCCCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGt < 1:5027336/93‑1 (MQ=255)
aaCAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGt > 1:540359/1‑93 (MQ=255)
aaCAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGt < 1:3480159/93‑1 (MQ=255)
cAGACCCAGCAG‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGttt < 2:2472302/93‑1 (MQ=255)
cAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGttt > 1:4168020/1‑93 (MQ=255)
cAGACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGttt > 1:2773147/1‑93 (MQ=255)
gACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGa < 1:1738521/93‑1 (MQ=255)
gACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGa > 1:5552629/1‑93 (MQ=255)
gACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGa < 1:3315985/93‑1 (MQ=255)
gACCCAGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGa < 2:3129453/93‑1 (MQ=255)
aGCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTa < 2:6162884/93‑1 (MQ=255)
gCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTaa > 2:6578368/1‑93 (MQ=255)
gCAA‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTaa > 1:1125484/1‑93 (MQ=255)
aa‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTaaaa < 1:601049/93‑1 (MQ=255)
aa‑GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTaaaa > 2:5040675/1‑93 (MQ=255)
ggCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAAcc > 2:6356967/1‑93 (MQ=255)
ggCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAAcc < 2:2860947/93‑1 (MQ=255)
gcgcTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAAccc > 2:4906857/1‑93 (MQ=255)
ccccacgACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGc < 1:4022991/90‑1 (MQ=255)
cacgACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCaa < 2:5516800/93‑1 (MQ=255)
|
GATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGG‑CACACGAGAGCGCC‑AACAGACCCAGCAA‑GGCGCTCACAACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAA > NC_000913/3130245‑3130423
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTACGATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACAACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAATTCA > NC_000913/3130241‑3130427
|
GTACGATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCCACAGACCCAGCAAGGCGCTCACG > SRR4302542.4590587/1‑94 (MQ=60)
GTACGATTGCACAATCACCAGTACGCCAAACATGGCGGGCGGCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACG > SRR4302542.3366701/1‑94 (MQ=60)
ACGATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGAC < SRR4302542.2356523/94‑1 (MQ=60)
GATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACAT > SRR4302542.978394/1‑94 (MQ=60)
GATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACAT < SRR4302542.1836663/94‑1 (MQ=60)
ATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATT < SRR4302542.2106815/94‑1 (MQ=60)
ATTGCACAACCACCAGTACGCCAAACAGGGCGGGCGTCATCCCTTTCCCGGCACACGA‑GAGCGCCAACAGCCCCAGCAGGGCGCTCGCGACATT < SRR4302542.189192/94‑1 (MQ=60)
TGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTAC < SRR4302542.3758146/94‑1 (MQ=60)
TGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTAC > SRR4302542.2018927/1‑94 (MQ=60)
TGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCCGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTAC > SRR4302542.7049250/1‑94 (MQ=60)
GCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACT < SRR4302542.3540310/94‑1 (MQ=60)
GCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACT < SRR4302542.3693835/94‑1 (MQ=60)
CACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTCCCGGCACACGA‑GAGCCCCAACAGCCCCAGCAAGGCGCTCACGACATTACTG < SRR4302542.2764976/94‑1 (MQ=60)
CACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTG < SRR4302542.3244403/94‑1 (MQ=60)
CACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTG < SRR4302542.2213542/94‑1 (MQ=60)
ACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGG < SRR4302542.6457089/94‑1 (MQ=60)
CAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGA < SRR4302542.732022/94‑1 (MQ=60)
AATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAG < SRR4302542.3355140/94‑1 (MQ=60)
AATCACAAGTACGCAAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGCCCCAGCAAGGCGCTCACGACATTACTGGAG < SRR4302542.3068247/94‑1 (MQ=60)
ATCACCAGTACGCCAAACATGGCGGGGGGCATCCCCTTAACGGCACACGA‑GAGCGCCAACAAACCCAGCAAGGCGCTCACGACATTACTGGAGC > SRR4302542.6474524/1‑94 (MQ=60)
CACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCT < SRR4302542.3327591/94‑1 (MQ=60)
CACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCT > SRR4302542.794773/1‑94 (MQ=60)
CACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCT < SRR4302542.4919541/94‑1 (MQ=60)
CACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAAGCGCTCACGACATTACTGGAGCCT > SRR4302542.7324233/1‑94 (MQ=60)
ACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTA < SRR4302542.3013987/94‑1 (MQ=60)
ACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTA > SRR4302542.2291386/1‑94 (MQ=60)
ACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTA < SRR4302542.6147236/94‑1 (MQ=60)
ACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTA < SRR4302542.4713521/94‑1 (MQ=60)
ACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTA > SRR4302542.3234120/1‑94 (MQ=60)
CAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAAC > SRR4302542.1746922/1‑94 (MQ=60)
CAGTACGCAAAACAGGGCGGGCGTCATCCCTTTCCCGGCACACGA‑GAGCGCCAACAGACCCAGCGAGGCGCTCACGACATTACTGGAGCCTAAC < SRR4302542.3875410/94‑1 (MQ=60)
AGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCCCGACACTACTCGAGCCTAACC > SRR4302542.4502355/1‑94 (MQ=60)
AGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACC < SRR4302542.2096028/94‑1 (MQ=60)
AGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAAAAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACC < SRR4302542.3016537/94‑1 (MQ=60)
GTCCGCAAAACATGGCGGGCGTCACCCCTTTACCGGCACACGA‑GAGCGCCAACAGCCCCAGCAGGGCCCTCACGACATTACTGGAGCCTAACCA < SRR4302542.66589/94‑1 (MQ=60)
GTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCA > SRR4302542.5542893/1‑94 (MQ=60)
CGCCAAACATGGCGGGCGTCATCCCTTTACCCGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGC > SRR4302542.852942/1‑94 (MQ=60)
GCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCG < SRR4302542.6105862/94‑1 (MQ=60)
CCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGC > SRR4302542.6482349/1‑94 (MQ=60)
CAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCT > SRR4302542.4044400/1‑94 (MQ=60)
AAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGCCCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCT < SRR4302542.5100859/94‑1 (MQ=60)
AAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTA > SRR4302542.3837079/1‑94 (MQ=60)
AAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTA > SRR4302542.3741541/1‑94 (MQ=60)
AACATGGCGGGCGTCACCCCTTTCCCGGCACACGA‑GAGCCCCAACAGCCCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTAT < SRR4302542.6862161/94‑1 (MQ=60)
ACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATT > SRR4302542.2897217/1‑94 (MQ=60)
ACAGGGCGGGCTTCACCCCTTCCCCGGCACACGA‑GAGCGCCAACAGCCCCAGCAGGGCGCCCACGACATTACTGGAGCCTAACCAGGCGCTATT < SRR4302542.120338/94‑1 (MQ=57)
CATGGCGGGCGTCATCCCTTTCCCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTG < SRR4302542.279066/94‑1 (MQ=60)
CATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTG > SRR4302542.6734865/1‑94 (MQ=60)
CATGGCGGGCGTCATCCCTTTAACCGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTG > SRR4302542.678840/1‑94 (MQ=60)
TGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCG > SRR4302542.6302374/1‑94 (MQ=60)
TGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCG < SRR4302542.5006002/94‑1 (MQ=60)
TGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCG < SRR4302542.2277342/94‑1 (MQ=60)
CGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAAT < SRR4302542.2392957/94‑1 (MQ=60)
CGGGATTCATCCCTTTACCGGCACAGGA‑GAGCGCCAACAGACCCAGCAAGGCGTTCACGACATTACTGGAGCCTATCCAGGCGCTATTGCGAAT < SRR4302542.7307053/94‑1 (MQ=60)
GGGCGTCATCCCTTTCCCGGCACACGA‑GAGCGCCAACAGCCCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATA < SRR4302542.5355332/94‑1 (MQ=60)
GGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATA < SRR4302542.7291274/94‑1 (MQ=60)
gcgccccccctttccgGGCACACGA‑GAGCGCCAACAGCCCCAGCAGGGCCCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAAT < SRR4302542.2631228/78‑1 (MQ=60)
GCGTCATCCCTTTCCCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAAT < SRR4302542.6551464/94‑1 (MQ=60)
CGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATG > SRR4302542.6299634/1‑94 (MQ=60)
ttccTCCCTTTCCCGGCACAGGA‑GAGCCCCAACAGCCCCAGCAGGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGG < SRR4302542.3917168/90‑1 (MQ=60)
GTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGG > SRR4302542.5753515/1‑94 (MQ=60)
GTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGG > SRR4302542.2262439/1‑94 (MQ=60)
GTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGG < SRR4302542.4964547/94‑1 (MQ=60)
GTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGG > SRR4302542.6318310/1‑94 (MQ=60)
TCATCCCTTTCCGGGCACACGA‑GAGCGCCAACAGCCCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGT < SRR4302542.3987548/94‑1 (MQ=60)
TCATCCCTTTCCCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGT < SRR4302542.7347227/94‑1 (MQ=60)
TCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGT < SRR4302542.4836877/94‑1 (MQ=60)
CATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTG < SRR4302542.2042266/94‑1 (MQ=60)
CATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTG < SRR4302542.4788498/94‑1 (MQ=60)
CATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTG > SRR4302542.1324029/1‑94 (MQ=60)
ATCCCTTTACCGGCACACGAGGACCGCCAACAGACCCAGC‑AGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTAATGCGAATAATGGTGC > SRR4302542.6247129/1‑94 (MQ=60)
ATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGC > SRR4302542.2497533/1‑94 (MQ=60)
ATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGC > SRR4302542.4648510/1‑94 (MQ=60)
ATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGC > SRR4302542.5612597/1‑94 (MQ=60)
ATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGC > SRR4302542.7278416/1‑94 (MQ=60)
ATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGC > SRR4302542.6787254/1‑94 (MQ=60)
TCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCG > SRR4302542.1492837/1‑94 (MQ=60)
CCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGA > SRR4302542.3403137/1‑94 (MQ=60)
TTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAAC < SRR4302542.6212727/94‑1 (MQ=60)
TTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAAC < SRR4302542.4820976/94‑1 (MQ=60)
TTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACG < SRR4302542.4418085/94‑1 (MQ=60)
TTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACG > SRR4302542.869192/1‑94 (MQ=60)
TCCCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGC < SRR4302542.4104610/94‑1 (MQ=60)
TACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGC < SRR4302542.4795347/94‑1 (MQ=60)
TACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGC > SRR4302542.2851986/1‑94 (MQ=60)
TACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGC > SRR4302542.2718437/1‑94 (MQ=60)
TACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGC < SRR4302542.7552280/94‑1 (MQ=60)
ACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCG < SRR4302542.3264741/94‑1 (MQ=60)
GGCACAGGA‑GAGCCCAAACAGCCCCAGAAGGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCA < SRR4302542.1711745/94‑1 (MQ=60)
gccacaggagagcccaaacagcccaagaagggccCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCA < SRR4302542.1736670/60‑1 (MQ=60)
CACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATC < SRR4302542.3076617/94‑1 (MQ=60)
CACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATC < SRR4302542.4522192/94‑1 (MQ=60)
CACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATC > SRR4302542.679965/1‑94 (MQ=60)
CACACGA‑GAGCGCAAACAGCCCGAGCAGGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATC < SRR4302542.2562081/94‑1 (MQ=60)
ACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCT < SRR4302542.3006861/94‑1 (MQ=60)
ACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCT > SRR4302542.127285/1‑94 (MQ=60)
ACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCT > SRR4302542.4037402/1‑94 (MQ=60)
ACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCT < SRR4302542.1077544/94‑1 (MQ=60)
CACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTG < SRR4302542.1561640/94‑1 (MQ=60)
CACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTG < SRR4302542.4188774/94‑1 (MQ=60)
CACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTG > SRR4302542.3973134/1‑94 (MQ=60)
ACGA‑GAGCGCCAACAGCCCCACCAAGGCCCCCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGC < SRR4302542.2771000/94‑1 (MQ=60)
CGA‑GAGCCCCAACAGCCCCAGCAGGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCA < SRR4302542.6728096/94‑1 (MQ=60)
GA‑GAGCGCCAACAGCCCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAA < SRR4302542.245733/94‑1 (MQ=60)
GA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAA > SRR4302542.5629529/1‑94 (MQ=60)
GA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAA > SRR4302542.4790959/1‑94 (MQ=60)
A‑GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAA > SRR4302542.1317153/1‑94 (MQ=60)
GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAAC < SRR4302542.4213816/94‑1 (MQ=60)
GAGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAAC > SRR4302542.1945816/1‑94 (MQ=60)
AGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACC < SRR4302542.4493116/94‑1 (MQ=60)
AGCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACC > SRR4302542.4673742/1‑94 (MQ=60)
GCGCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCA < SRR4302542.4861632/94‑1 (MQ=60)
CGCCAACAGACCCAGCAGGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAA < SRR4302542.351048/94‑1 (MQ=60)
GCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAT > SRR4302542.6643729/1‑94 (MQ=60)
GCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAT < SRR4302542.689767/94‑1 (MQ=60)
GCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAT < SRR4302542.7419531/94‑1 (MQ=60)
GCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAT > SRR4302542.2628313/1‑94 (MQ=60)
GCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAT > SRR4302542.4372968/1‑94 (MQ=60)
GCCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAT < SRR4302542.4932985/94‑1 (MQ=60)
CCCAACAGCCCCAGCAAGGCCCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAAT < SRR4302542.4019835/94‑1 (MQ=60)
CCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATG < SRR4302542.684613/94‑1 (MQ=60)
CCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATG > SRR4302542.4470649/1‑94 (MQ=60)
CCAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATG > SRR4302542.3205201/1‑94 (MQ=60)
CAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGT > SRR4302542.545031/1‑94 (MQ=60)
CAACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGT < SRR4302542.630791/94‑1 (MQ=60)
AACAGCCCCAGCAGGGCCCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTT < SRR4302542.5076141/94‑1 (MQ=60)
AACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTT < SRR4302542.3512728/94‑1 (MQ=60)
ACAGCCCCAGCAGGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTT < SRR4302542.6548744/94‑1 (MQ=60)
ACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTT > SRR4302542.4209127/1‑94 (MQ=60)
ACAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTT > SRR4302542.2799864/1‑94 (MQ=60)
CAGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTG < SRR4302542.453309/94‑1 (MQ=60)
AGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGA > SRR4302542.2783777/1‑94 (MQ=60)
AGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGA > SRR4302542.5606585/1‑94 (MQ=60)
AGACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGA < SRR4302542.1880908/94‑1 (MQ=60)
GACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGAT < SRR4302542.3347234/94‑1 (MQ=60)
GACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGAT < SRR4302542.3709505/94‑1 (MQ=60)
GACCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGAT < SRR4302542.1753604/94‑1 (MQ=60)
CCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGT > SRR4302542.429890/1‑94 (MQ=60)
CCCAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGT > SRR4302542.5622259/1‑94 (MQ=60)
CAGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTA < SRR4302542.2742859/94‑1 (MQ=60)
agaagggccCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAA < SRR4302542.1305823/85‑1 (MQ=60)
AGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAA > SRR4302542.5133739/1‑94 (MQ=60)
AGCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAA > SRR4302542.1135096/1‑94 (MQ=60)
GCAGGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAA < SRR4302542.6519182/94‑1 (MQ=60)
GCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAA < SRR4302542.2079655/94‑1 (MQ=60)
GCAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAA > SRR4302542.584441/1‑94 (MQ=60)
CAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAA > SRR4302542.7014294/1‑94 (MQ=60)
CAAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAA < SRR4302542.6975979/94‑1 (MQ=60)
AAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAAC < SRR4302542.606228/94‑1 (MQ=60)
AAGGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAAC > SRR4302542.534845/1‑94 (MQ=60)
GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCC < SRR4302542.3197025/94‑1 (MQ=60)
GGCGCTCACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCC < SRR4302542.108613/94‑1 (MQ=60)
CACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAAT < SRR4302542.2249336/94‑1 (MQ=60)
CACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAAT > SRR4302542.5108169/1‑94 (MQ=60)
ACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAATT < SRR4302542.3875765/94‑1 (MQ=60)
ACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAATT > SRR4302542.6738799/1‑94 (MQ=60)
ACGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAATT < SRR4302542.811688/94‑1 (MQ=60)
CGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAATTC > SRR4302542.2669779/1‑94 (MQ=60)
CGACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAATTC > SRR4302542.3896095/1‑94 (MQ=60)
GACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAATTCA > SRR4302542.3859799/1‑94 (MQ=60)
GACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAATTCA > SRR4302542.7529563/1‑94 (MQ=60)
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GTACGATTGCACAATCACCAGTACGCCAAACATGGCGGGCGTCATCCCTTTACCGGCACACGA‑GAGCGCCAACAGACCCAGCAAGGCGCTCACAACATTACTGGAGCCTAACCAGGCGCTATTGCGAATAATGGTGCGAAACGCGCCATCTGCAAACCAATGTTTGATGTTAAAACCCGCCAATTCA > NC_000913/3130241‑3130427
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
