Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,132,556	T→C	R137R (CGT→CGC)	yghT →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,132,556	0	T	C	81.9%	639.8 / 154.2	331	R137R (CGT→CGC)	yghT	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (32/28); new base C (145/126); total (177/154)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.54e-01

Only 100 of 340 total aligned reads displayed.

GGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCT  >  NC_000913/3132464‑3132648

 ggTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGtt                                                                                             <  2:2850370/93‑1 (MQ=255)

  gTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGctt                                                                                            <  2:2404687/93‑1 (MQ=255)

    tAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTg                                                                                          <  2:6056386/93‑1 (MQ=255)

         gTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCa                                                                                     <  2:1266412/93‑1 (MQ=255)

         gTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCa                                                                                     <  2:1354875/93‑1 (MQ=255)

          ttCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCAt                                                                                    <  1:4725025/93‑1 (MQ=255)

            cTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCAtgg                                                                                  >  2:5816222/1‑93 (MQ=255)

             tAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTTCGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCAtggc                                                                                 >  1:7514611/1‑93 (MQ=255)

             tAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCAtggc                                                                                 >  2:2660377/1‑93 (MQ=255)

             tAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCAtggc                                                                                 <  2:7162541/93‑1 (MQ=255)

               accgaccgTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCAtggctg                                                                               >  1:5067433/1‑93 (MQ=255)

               accgaccgTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCAtggctg                                                                               <  2:298551/93‑1 (MQ=255)

                ccgaccgTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCAtggctgg                                                                              <  1:4614667/93‑1 (MQ=255)

                ccgaccgTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCAtggctgg                                                                              >  1:5594466/1‑93 (MQ=255)

                   accgTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCaa                                                                           >  2:3559478/1‑93 (MQ=255)

                     cgTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGc                                                                         >  2:2135403/1‑93 (MQ=255)

                      gTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGcc                                                                        >  1:4062840/1‑93 (MQ=255)

                      gTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGcc                                                                        >  1:625284/1‑93 (MQ=255)

                      gTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGcc                                                                        >  1:5208885/1‑93 (MQ=255)

                      gTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGcc                                                                        <  2:4047192/93‑1 (MQ=255)

                       ttATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCa                                                                       >  1:1280152/1‑93 (MQ=255)

                       ttATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCa                                                                       >  2:5411518/1‑93 (MQ=255)

                       ttATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCa                                                                       >  2:3169806/1‑93 (MQ=255)

                         aTCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAgg                                                                     >  1:6985371/1‑93 (MQ=255)

                          tCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGa                                                                    >  1:80675/1‑93 (MQ=255)

                          tCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGa                                                                    >  2:3258007/1‑93 (MQ=255)

                           ccTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGaa                                                                   <  2:779247/93‑1 (MQ=255)

                           ccTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGaa                                                                   <  1:3238765/93‑1 (MQ=255)

                            cTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAAc                                                                  <  1:1945658/93‑1 (MQ=255)

                            cTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAAc                                                                  >  1:5528494/1‑93 (MQ=255)

                             tCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACg                                                                 >  1:1399358/1‑93 (MQ=255)

                               aGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTa                                                               <  2:6888135/93‑1 (MQ=255)

                                ggACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTaa                                                              >  1:6582767/1‑93 (MQ=255)

                                ggACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTaa                                                              <  2:2224166/93‑1 (MQ=255)

                                ggACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTaa                                                              <  1:5289446/93‑1 (MQ=255)

                                ggACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTaa                                                              <  2:6323801/93‑1 (MQ=255)

                                 gACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTaaa                                                             <  1:840545/93‑1 (MQ=255)

                                 gACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTaaa                                                             >  2:5005471/1‑93 (MQ=255)

                                  aCCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAg                                                            >  2:3896906/1‑93 (MQ=255)

                                  aCCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAg                                                            >  2:2591923/1‑93 (MQ=255)

                                      aaTTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGAAAGCCAGGAACGTAAAGCGtt                                                        >  1:6479184/1‑93 (MQ=255)

                                        ttCCTGGCGCTTACGATGGTCGGGTGTCCCACCCAAACGTTGAAGGCGGTCCCTTTGTCTAATGGCTGGCAAGCCAGGAACGTAAAGCGTTTc                                                      <  1:6157189/93‑1 (MQ=255)

                                        ttCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTc                                                      >  2:7249178/1‑93 (MQ=255)

                                        ttCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGCACGTAAAGCGTTTc                                                      <  2:6453356/93‑1 (MQ=255)

                                        ttCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTc                                                      >  2:4612993/1‑93 (MQ=255)

                                         tCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCa                                                     <  1:1867473/93‑1 (MQ=255)

                                          ccTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCAc                                                    <  1:4210461/93‑1 (MQ=255)

                                           cTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACt                                                   >  2:3312226/1‑93 (MQ=255)

                                           cTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACt                                                   >  1:4438897/1‑93 (MQ=255)

                                           cTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACt                                                   <  2:7524209/93‑1 (MQ=255)

                                           cTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACt                                                   <  1:741561/93‑1 (MQ=255)

                                            tGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTg                                                  >  2:5098778/1‑93 (MQ=255)

                                            tGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTg                                                  <  2:4277006/93‑1 (MQ=255)

                                              gcgcTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGa                                                >  2:6506593/1‑93 (MQ=255)

                                               cgcTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGAt                                               <  1:2313826/93‑1 (MQ=255)

                                               cgcTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGAt                                               <  1:2215087/93‑1 (MQ=255)

                                               cgcTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGAt                                               <  1:4691005/93‑1 (MQ=255)

                                                  ttACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATggg                                            >  1:2858671/1‑92 (MQ=255)

                                                   tACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCg                                           <  1:6356951/93‑1 (MQ=255)

                                                    aCGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGa                                          <  1:7243737/93‑1 (MQ=255)

                                                      gATGGTACGGTGTTCCCACCTAACGTTGAAGGGGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGc                                        >  2:2311668/1‑93 (MQ=255)

                                                      gATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGc                                        <  2:2779370/93‑1 (MQ=255)

                                                      gATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGc                                        >  2:2031391/1‑93 (MQ=255)

                                                      gATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGc                                        >  1:7055949/1‑93 (MQ=255)

                                                       aTGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGcc                                       >  2:6671715/1‑93 (MQ=255)

                                                       aTGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGcc                                       <  1:5233771/93‑1 (MQ=255)

                                                       aTGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGcc                                       <  2:6573039/93‑1 (MQ=255)

                                                         ggTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCAt                                     >  2:4346503/1‑93 (MQ=255)

                                                           tACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATaa                                   >  2:7373878/1‑93 (MQ=255)

                                                            aCGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAg                                  <  2:5255588/93‑1 (MQ=255)

                                                               gtgtTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCt                               >  2:5684903/1‑93 (MQ=255)

                                                               gtgtTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCt                               >  2:5900090/1‑93 (MQ=255)

                                                                  ttCCCGCCTAACGTTGAAGGGGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGAt                            <  2:7084992/93‑1 (MQ=255)

                                                                  ttCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGAt                            <  2:4194148/93‑1 (MQ=255)

                                                                   tCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATc                           <  1:1111451/93‑1 (MQ=255)

                                                                   tCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATc                           >  1:4578432/1‑93 (MQ=255)

                                                                    cccACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAACCATAAGCCTGATCt                          >  1:591369/1‑93 (MQ=255)

                                                                      cACTTAACGTTGAAGGCGGTGGCTTTGTCTCATGGCGGGAAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTgg                        <  1:1476753/93‑1 (MQ=255)

                                                                      cACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTgg                        >  1:4795373/1‑93 (MQ=255)

                                                                       cccTACCGTTGAGGGTGGTCGTTTTGTCTCATGGCGGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGt                       <  1:2638571/92‑1 (MQ=255)

                                                                       aCCTAAGGTTGAAGGTGGTTTTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGt                       <  1:4269878/93‑1 (MQ=255)

                                                                       aCCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGGGAGCCATAAGCCCGATCTGGt                       >  1:3633043/1‑93 (MQ=255)

                                                                        ccaaaCGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGAAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGtc                      <  1:3873387/90‑1 (MQ=255)

                                                                          tAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGtcat                    >  1:3946180/1‑93 (MQ=255)

                                                                          tAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGtcat                    <  2:1482422/93‑1 (MQ=255)

                                                                          tAACGTTGAAGGCGGCCTCTTTGTCTCAGGGCGGGAAAGCCAGGAACGTAAAGCGTTTCACTGGAGGGCGAGCCATAAGCCTGATCTGGtcat                    <  1:3562012/93‑1 (MQ=255)

                                                                            aCGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGtcatca                  <  2:1906688/93‑1 (MQ=255)

                                                                            aCGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGtcatca                  >  1:1022906/1‑93 (MQ=255)

                                                                             cGTTGAGGGTGGTCTTTTTGTCTCATGGCGGGAAAGCCAGGAACGTAAAGCGTTTCACTGGAGGGGGAGCCATAAGCCTGATCTGGTCATCaa                 <  1:5759107/93‑1 (MQ=255)

                                                                              gTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCaaa                >  2:1000551/1‑93 (MQ=255)

                                                                               ttGAAGGCGTCCGCTTTGTCTCAGGGCTGGCAAGCCAGGAACAAAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAAc               <  1:6722029/93‑1 (MQ=255)

                                                                               ttGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAAc               <  2:1787531/93‑1 (MQ=255)

                                                                               tggAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAAc               <  1:5449073/91‑1 (MQ=255)

                                                                                tGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACt              <  2:4862198/93‑1 (MQ=255)

                                                                                   aGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCaa           >  1:4245488/1‑93 (MQ=255)

                                                                                    gggggtCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAAt          <  1:1786184/90‑1 (MQ=255)

                                                                                     gcggtCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATg         >  1:244567/3‑93 (MQ=255)

                                                                                       ggtCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGtt       >  1:4950670/1‑93 (MQ=255)

                                                                                        gtCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTg      >  1:3198985/1‑93 (MQ=255)

                                                                                        gtCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTg      <  2:3501015/93‑1 (MQ=255)

GGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCT  >  NC_000913/3132464‑3132648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTT  >  NC_000913/3132463‑3132649

CGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGT                                                                                               >  SRR4302542.5847372/1‑94 (MQ=60)

CGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGC                                                                                               >  SRR4302542.4205912/1‑94 (MQ=60)

CGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGC                                                                                               >  SRR4302542.7053977/1‑94 (MQ=60)

 GGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCT                                                                                              <  SRR4302542.3721873/94‑1 (MQ=60)

 GGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCT                                                                                              >  SRR4302542.1969565/1‑94 (MQ=60)

  GGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTT                                                                                             >  SRR4302542.1928215/1‑94 (MQ=60)

   GTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTT                                                                                            >  SRR4302542.1443031/1‑94 (MQ=60)

    TTAATTGTTCTACCCGCCCGTTATCCTCAGGACCAAATTCCGGGCGCTTACGATGGTCCGGTTTTCCCCCCTAACGTTGAAGGCGGTCGCTTTG                                                                                           <  SRR4302542.2399721/94‑1 (MQ=60)

    TTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCNNCTAACGTTGNNGGCGGTCGNNNTG                                                                                           <  SRR4302542.6374676/94‑1 (MQ=60)

    TTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTG                                                                                           <  SRR4302542.3257356/94‑1 (MQ=60)

    TTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTG                                                                                           >  SRR4302542.4223623/1‑94 (MQ=60)

      AATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTC                                                                                         >  SRR4302542.4631628/1‑94 (MQ=60)

      AATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTC                                                                                         >  SRR4302542.5907042/1‑94 (MQ=60)

      AATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGCGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTC                                                                                         >  SRR4302542.4302436/1‑94 (MQ=60)

          GTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCAT                                                                                     <  SRR4302542.7384352/94‑1 (MQ=60)

          GTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCAT                                                                                     >  SRR4302542.7054638/1‑94 (MQ=60)

          GTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCAT                                                                                     <  SRR4302542.4771248/94‑1 (MQ=60)

          GTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCGT                                                                                     <  SRR4302542.820142/94‑1 (MQ=60)

           TTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATG                                                                                    <  SRR4302542.6349343/94‑1 (MQ=60)

           TTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATG                                                                                    >  SRR4302542.4215154/1‑94 (MQ=60)

           TTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATG                                                                                    <  SRR4302542.4771076/94‑1 (MQ=60)

            TCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGG                                                                                   >  SRR4302542.5500151/1‑94 (MQ=60)

             CTAACCGACCGTTATCCTCAGTACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGC                                                                                  >  SRR4302542.2330186/1‑94 (MQ=60)

             CTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTTCGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGC                                                                                  >  SRR4302542.7588512/1‑94 (MQ=60)

             CTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGC                                                                                  >  SRR4302542.4725777/1‑94 (MQ=60)

             CTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGC                                                                                  >  SRR4302542.787855/1‑94 (MQ=60)

             CTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGC                                                                                  >  SRR4302542.4472843/1‑94 (MQ=60)

             CTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGC                                                                                  >  SRR4302542.2435851/1‑94 (MQ=60)

              TAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCT                                                                                 <  SRR4302542.5060652/94‑1 (MQ=60)

               AACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTG                                                                                >  SRR4302542.3947909/1‑94 (MQ=60)

               AACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTG                                                                                >  SRR4302542.5116672/1‑94 (MQ=60)

                ACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGG                                                                               >  SRR4302542.5648823/1‑94 (MQ=60)

                 CCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGC                                                                              >  SRR4302542.4569209/1‑94 (MQ=60)

                 CCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGC                                                                              <  SRR4302542.810481/94‑1 (MQ=60)

                 CCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGC                                                                              >  SRR4302542.7068862/1‑94 (MQ=60)

                 CCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGC                                                                              <  SRR4302542.4659753/94‑1 (MQ=60)

                   GACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAA                                                                            >  SRR4302542.254012/1‑94 (MQ=60)

                     CCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGC                                                                          >  SRR4302542.4526019/1‑94 (MQ=60)

                     CCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGC                                                                          >  SRR4302542.561386/1‑94 (MQ=60)

                      CGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCC                                                                         >  SRR4302542.4102905/1‑94 (MQ=60)

                      CGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCC                                                                         >  SRR4302542.3924035/1‑94 (MQ=60)

                      CGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAGGCC                                                                         >  SRR4302542.3926433/1‑94 (MQ=60)

                      CGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCC                                                                         >  SRR4302542.630667/1‑94 (MQ=60)

                      CGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCC                                                                         >  SRR4302542.5259546/1‑94 (MQ=60)

                      CGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCC                                                                         <  SRR4302542.6765271/94‑1 (MQ=60)

                       GTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCA                                                                        >  SRR4302542.7535281/1‑94 (MQ=60)

                       GTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCA                                                                        >  SRR4302542.1291175/1‑94 (MQ=60)

                        TTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAG                                                                       >  SRR4302542.4437614/1‑94 (MQ=60)

                         TATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGG                                                                      >  SRR4302542.7053983/1‑94 (MQ=60)

                          ATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGA                                                                     >  SRR4302542.81350/1‑94 (MQ=60)

                            CCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAAC                                                                   >  SRR4302542.5582226/1‑94 (MQ=60)

                            CCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAAC                                                                   <  SRR4302542.3269378/94‑1 (MQ=60)

                            CCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGGGTTCCCACCTAACGTTGAAGGCGGTAGCTTTGTCTCATGGCTGGCAAGCCAGGAAC                                                                   >  SRR4302542.5594777/1‑94 (MQ=60)

                             CTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACG                                                                  <  SRR4302542.1962487/94‑1 (MQ=60)

                             CTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACG                                                                  >  SRR4302542.92567/1‑94 (MQ=60)

                             CTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACG                                                                  >  SRR4302542.7006336/1‑94 (MQ=60)

                             CTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACG                                                                  >  SRR4302542.1411453/1‑94 (MQ=60)

                             CTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACG                                                                  >  SRR4302542.2923285/1‑94 (MQ=60)

                              TCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCATCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGT                                                                 <  SRR4302542.7375853/94‑1 (MQ=60)

                              TCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGT                                                                 >  SRR4302542.5231665/1‑94 (MQ=60)

                               CAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGGAAGTA                                                                >  SRR4302542.323481/1‑94 (MQ=60)

                               CAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTA                                                                >  SRR4302542.4814213/1‑94 (MQ=60)

                                AGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAA                                                               >  SRR4302542.6288293/1‑94 (MQ=60)

                                AGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAA                                                               >  SRR4302542.6647626/1‑94 (MQ=60)

                                AGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAA                                                               >  SRR4302542.1632093/1‑94 (MQ=60)

                                 GGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAA                                                              <  SRR4302542.200259/94‑1 (MQ=60)

                                 GGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAA                                                              <  SRR4302542.5340861/94‑1 (MQ=60)

                                  GACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAG                                                             <  SRR4302542.847807/94‑1 (MQ=60)

                                  GACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAG                                                             >  SRR4302542.4428932/1‑94 (MQ=60)

                                  GACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAG                                                             <  SRR4302542.2772211/94‑1 (MQ=60)

                                   ACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGC                                                            >  SRR4302542.1853811/1‑94 (MQ=60)

                                   ACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGC                                                            >  SRR4302542.1320764/1‑94 (MQ=60)

                                   ACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGC                                                            >  SRR4302542.4923410/1‑94 (MQ=60)

                                    CCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCG                                                           >  SRR4302542.2909273/1‑94 (MQ=60)

                                    CCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCG                                                           <  SRR4302542.2202704/94‑1 (MQ=60)

                                    CCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCG                                                           >  SRR4302542.5172988/1‑94 (MQ=60)

                                    CCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCG                                                           <  SRR4302542.4753639/94‑1 (MQ=60)

                                     CAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGT                                                          >  SRR4302542.5574424/1‑94 (MQ=60)

                                     CAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGT                                                          >  SRR4302542.6628205/1‑94 (MQ=60)

                                      AAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTT                                                         <  SRR4302542.1388306/94‑1 (MQ=60)

                                      AAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGAAAGCCAGGAACGTAAAGCGTT                                                         >  SRR4302542.6543016/1‑94 (MQ=60)

                                      AAATTCCTGGCGCTTACGATGGTACGGTGTCCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTT                                                         <  SRR4302542.3406949/94‑1 (MQ=60)

                                       AATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTT                                                        <  SRR4302542.5275256/94‑1 (MQ=60)

                                        ATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTC                                                       <  SRR4302542.7025688/94‑1 (MQ=60)

                                         TTCCTGGCGCTTACGATGGTCGGGTGTCCCACCCAAACGTTGAAGGCGGTCCCTTTGTCTAATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCA                                                      <  SRR4302542.6216817/94‑1 (MQ=42)

                                         TTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCA                                                      <  SRR4302542.6216818/94‑1 (MQ=60)

                                         TTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCA                                                      >  SRR4302542.791708/1‑94 (MQ=60)

                                         TTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCA                                                      >  SRR4302542.3753145/1‑94 (MQ=60)

                                          TCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCAC                                                     <  SRR4302542.1883627/94‑1 (MQ=60)

                                           CCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACT                                                    <  SRR4302542.617400/94‑1 (MQ=60)

                                           CCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACT                                                    <  SRR4302542.4304651/94‑1 (MQ=60)

                                           CCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACT                                                    >  SRR4302542.4482461/1‑94 (MQ=60)

                                           CCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACT                                                    <  SRR4302542.4848294/94‑1 (MQ=60)

                                           CCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACT                                                    <  SRR4302542.4251959/94‑1 (MQ=60)

                                            CTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTG                                                   <  SRR4302542.1663173/94‑1 (MQ=60)

                                            CTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTG                                                   >  SRR4302542.2333042/1‑94 (MQ=60)

                                            CTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTG                                                   <  SRR4302542.7569558/94‑1 (MQ=60)

                                            CTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTG                                                   <  SRR4302542.747993/94‑1 (MQ=60)

                                            CTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTG                                                   <  SRR4302542.4782310/94‑1 (MQ=60)

                                              GGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGA                                                 <  SRR4302542.7275620/94‑1 (MQ=60)

                                               GCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTGGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGAT                                                <  SRR4302542.6547782/94‑1 (MQ=60)

                                                CGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATG                                               <  SRR4302542.5309456/94‑1 (MQ=60)

                                                CGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATG                                               <  SRR4302542.5319091/94‑1 (MQ=60)

                                                CGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATG                                               <  SRR4302542.2333686/94‑1 (MQ=60)

                                                CGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATG                                               <  SRR4302542.4736812/94‑1 (MQ=60)

                                                CGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATG                                               <  SRR4302542.2234151/94‑1 (MQ=60)

                                                CGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATG                                               <  SRR4302542.3076264/94‑1 (MQ=60)

                                                 GCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGG                                              <  SRR4302542.5097208/94‑1 (MQ=60)

                                                  CTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGG                                             >  SRR4302542.2886142/1‑94 (MQ=60)

                                                  CTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGC                                             >  SRR4302542.1947722/1‑94 (MQ=60)

                                                  CTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGC                                             >  SRR4302542.6151139/1‑94 (MQ=60)

                                                   TTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCG                                            >  SRR4302542.6449701/1‑94 (MQ=60)

                                                   TTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCG                                            <  SRR4302542.3644943/94‑1 (MQ=60)

                                                   TTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCG                                            <  SRR4302542.1554290/94‑1 (MQ=60)

                                                    TACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGA                                           <  SRR4302542.6419561/94‑1 (MQ=60)

                                                     ACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAG                                          <  SRR4302542.7314773/94‑1 (MQ=60)

                                                     ACGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAG                                          <  SRR4302542.672612/94‑1 (MQ=60)

                                                      CGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGC                                         >  SRR4302542.4631400/1‑94 (MQ=60)

                                                      CGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGC                                         >  SRR4302542.7125210/1‑94 (MQ=60)

                                                      CGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGC                                         >  SRR4302542.4631399/1‑94 (MQ=60)

                                                      CGATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGC                                         >  SRR4302542.1208600/1‑94 (MQ=60)

                                                        ATGGTACGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCA                                       <  SRR4302542.5284660/94‑1 (MQ=60)

                                                          ggtcgggtgtcccccCCTAACGTTGAAGGCGGTCGTTTTGTCTCATGGCGGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATA                                     <  SRR4302542.2503028/79‑1 (MQ=60)

                                                           GTACGGTGTCCCCCCCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAA                                    <  SRR4302542.7156332/94‑1 (MQ=60)

                                                              CGGTGTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCC                                 >  SRR4302542.6936079/1‑94 (MQ=60)

                                                               GGTGTCCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCT                                <  SRR4302542.4037147/94‑1 (MQ=60)

                                                                  GTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGAT                             >  SRR4302542.6563346/1‑94 (MQ=60)

                                                                  GTTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGAT                             >  SRR4302542.854097/1‑94 (MQ=60)

                                                                   TTCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATC                            >  SRR4302542.4623223/1‑94 (MQ=60)

                                                                   TCCCCACCAACCGTTGAAGGCGGTCGCTTTGTCTCATGGCGGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATC                            <  SRR4302542.2001063/94‑1 (MQ=60)

                                                                    TCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCT                           <  SRR4302542.1120959/94‑1 (MQ=60)

                                                                    TCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCT                           >  SRR4302542.4136239/1‑94 (MQ=60)

                                                                    TCCCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAACCATAAGCCTGATCT                           >  SRR4302542.596467/1‑94 (MQ=60)

                                                                    CCCCACCTAATGTGGAAGGCGGTCTCTTTGTCTCATGGCGGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCT                           <  SRR4302542.5384267/94‑1 (MQ=60)

                                                                      CCCCCAAACGTTGAAGGCGGTCGCTTTGTCTCAGGGCTGGCAAGCCAGGAACGTAAAGCTTTTCAATGGATGGCGAGCCATAAGCCTGATCTGG                         <  SRR4302542.3153873/94‑1 (MQ=60)

                                                                      CCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGG                         >  SRR4302542.1098887/1‑94 (MQ=60)

                                                                      CCACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGG                         >  SRR4302542.4842103/1‑94 (MQ=60)

                                                                       CCCCTAACGTTGAGGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGT                        <  SRR4302542.5954658/94‑1 (MQ=60)

                                                                       CACTTAACGTTGAAGGCGGTGGCTTTGTCTCATGGCGGGAAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGT                        <  SRR4302542.1489491/94‑1 (MQ=60)

                                                                       CACCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGGGAGCCATAAGCCCGATCTGGT                        >  SRR4302542.3666896/1‑94 (MQ=60)

                                                                        CCCTACCGTTGAGGGTGGTCGTTTTGTCTCATGGCGGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTC                       <  SRR4302542.2664055/94‑1 (MQ=60)

                                                                        ACCTAAGGTTGAAGGTGGTTTTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTC                       <  SRR4302542.4311896/94‑1 (MQ=60)

                                                                        ACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTC                       >  SRR4302542.6398586/1‑94 (MQ=60)

                                                                         CCTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCA                      >  SRR4302542.4751196/1‑94 (MQ=60)

                                                                         CCAAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGAAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCA                      <  SRR4302542.3911651/94‑1 (MQ=60)

                                                                          ctacgttgaaggggGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCAT                     <  SRR4302542.2371167/80‑1 (MQ=60)

                                                                          CTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCAT                     >  SRR4302542.6241826/1‑94 (MQ=60)

                                                                          CTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCAT                     >  SRR4302542.3985147/1‑94 (MQ=60)

                                                                          CTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCAT                     >  SRR4302542.2607622/1‑94 (MQ=60)

                                                                          CTAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCAT                     >  SRR4302542.3536154/1‑94 (MQ=60)

                                                                           TAACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATC                    <  SRR4302542.1209088/94‑1 (MQ=60)

                                                                           TAACGTTGAAGGCGGCCTCTTTGTCTCAGGGCGGGAAAGCCAGGAACGTAAAGCGTTTCACTGGAGGGCGAGCCATAAGCCTGATCTGGTCATC                    <  SRR4302542.3595270/94‑1 (MQ=60)

                                                                            AACGTTGAAGGCGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCTTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCA                   <  SRR4302542.5653953/94‑1 (MQ=60)

                                                                            AACGTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCA                   >  SRR4302542.1031721/1‑94 (MQ=60)

                                                                              CGTTGAGGGTGGTCTTTTTGTCTCATGGCGGGAAAGCCAGGAACGTAAAGCGTTTCACTGGAGGGGGAGCCATAAGCCTGATCTGGTCATCAAA                 <  SRR4302542.5815008/94‑1 (MQ=60)

                                                                               GTTGAGGGCGGTCGCTTTGTCTCAGGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGGGAGCCATAAGCCTGATCTGGTCATCAAAC                <  SRR4302542.2811524/94‑1 (MQ=60)

                                                                               GTTGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAAC                >  SRR4302542.3794541/1‑94 (MQ=60)

                                                                                TGGAAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACT               <  SRR4302542.5502014/94‑1 (MQ=60)

                                                                                  GAAGGCGGTCGCTTTGTCTCATGGCTGGCAAACCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCA             >  SRR4302542.5577805/1‑94 (MQ=60)

                                                                                   AAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAA            >  SRR4302542.4287321/1‑94 (MQ=60)

                                                                                   AAGGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAA            >  SRR4302542.5263736/1‑94 (MQ=60)

                                                                                    gggcGGTCGCTTTGTCTCATGGCTGGAAAGCCAGGAACGTAAAGCTTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAAT           <  SRR4302542.6542528/90‑1 (MQ=60)

                                                                                    AGGGGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAAT           <  SRR4302542.4285601/94‑1 (MQ=60)

                                                                                    AGGCGGTCGCTTTGTCTCATGGCGGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAAT           <  SRR4302542.1472301/94‑1 (MQ=60)

                                                                                     gttggtgtTTTTGTCTCAGGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGAGGGGGAGCCATAAGCCTGATCTGGTCATCAAACTCAATG          <  SRR4302542.4972864/86‑1 (MQ=60)

                                                                                     GGGGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATG          <  SRR4302542.3639342/94‑1 (MQ=60)

                                                                                     GGGGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATG          <  SRR4302542.1801683/94‑1 (MQ=60)

                                                                                     GGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATG          >  SRR4302542.4056852/1‑94 (MQ=60)

                                                                                     GGCGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATG          >  SRR4302542.246666/1‑94 (MQ=60)

                                                                                     GGCGGTCGCTTTGTCTCATGGCTGGAAAGCCAGGAACGTAAAGCGTTTCACTGGATGGGGAGCCATAAGCCTGATCTGGTCATCAAACTCAATG          <  SRR4302542.1097391/94‑1 (MQ=60)

                                                                                     GGCGGTCGCTTCGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCCCTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATG          <  SRR4302542.5027836/94‑1 (MQ=60)

                                                                                      GCGGTCGCTTTGTCTCAGGGCGGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGT         <  SRR4302542.5763698/94‑1 (MQ=60)

                                                                                       CGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTT        >  SRR4302542.4699191/1‑94 (MQ=60)

                                                                                       CGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTT        >  SRR4302542.813998/1‑94 (MQ=60)

                                                                                       CGGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTT        >  SRR4302542.4998766/1‑94 (MQ=60)

                                                                                        GGTTGTTTTGTCTCAGGGCTGGAAAGCCAGGAACGTAAAGCGTTTCACTGGATGGGGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTG       <  SRR4302542.73967/94‑1 (MQ=60)

                                                                                        GGTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTG       >  SRR4302542.3229273/1‑94 (MQ=60)

                                                                                         GTCGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGA      <  SRR4302542.5304408/94‑1 (MQ=60)

                                                                                          TCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGAC     >  SRR4302542.5598013/1‑94 (MQ=60)

                                                                                          TCGCTTTGTCTCAGGGCTGGCAAGCCAGGAACGTAAAGCTTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGAC     <  SRR4302542.1830449/94‑1 (MQ=60)

                                                                                          TCGCTTTGTCTAATGGCTGGCAAGCAAGGAACGTAAAGCGTTTCACTGGAGGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGAC     <  SRR4302542.3524722/94‑1 (MQ=60)

                                                                                           CGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACC    >  SRR4302542.3080568/1‑94 (MQ=60)

                                                                                           CGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACC    >  SRR4302542.5055172/1‑94 (MQ=60)

                                                                                           CGCTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACC    <  SRR4302542.5776265/94‑1 (MQ=60)

                                                                                            GCTTTGTCTCATGCCTGGAAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCT   <  SRR4302542.5190115/94‑1 (MQ=60)

                                                                                             TTTTGTCTCATGGCGGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTT  <  SRR4302542.13418/94‑1 (MQ=60)

                                                                                             CTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTT  >  SRR4302542.5660284/1‑94 (MQ=60)

                                                                                             CTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTT  <  SRR4302542.6045480/94‑1 (MQ=60)

                                                                                             CTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTT  >  SRR4302542.6784317/1‑94 (MQ=60)

CGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTT  >  NC_000913/3132463‑3132649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`