Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,195,844 |
A→G |
V480A (GTG→GCG) |
glnE ← |
GlnE |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,195,844 | 0 | A | G | 80.2%
| 464.0
/ 114.7
| 232 | V480A (GTG→GCG) | glnE | GlnE |
| Reads supporting (aligned to +/- strand): ref base A (22/24); new base G (114/72); total (136/96) |
| Fisher's exact test for biased strand distribution p-value = 1.32e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 232 total aligned reads displayed.
ATGCGGCATCAGATGGTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGT > NC_000913/3195753‑3195933
|
tGCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGcc > 1:7330493/1‑93 (MQ=255)
tGCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGcc < 1:3821651/93‑1 (MQ=255)
gCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCt < 2:982477/93‑1 (MQ=255)
ggCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGt > 2:4029894/1‑93 (MQ=255)
ggCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGt < 2:4405038/93‑1 (MQ=255)
gCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGtt < 2:163541/93‑1 (MQ=255)
gCATCAGATGGTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGtt > 2:4149407/1‑93 (MQ=255)
cATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGttt < 1:6407472/93‑1 (MQ=255)
aTCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTg > 1:5698665/1‑93 (MQ=255)
tCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGc > 2:1396006/1‑93 (MQ=255)
cAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCg < 1:846634/93‑1 (MQ=255)
cAGATGGTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCg > 1:6772252/1‑93 (MQ=255)
tGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGatca < 2:4924995/93‑1 (MQ=255)
ggTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGatcat < 2:7269726/93‑1 (MQ=255)
gTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGatgatc < 1:6973482/93‑1 (MQ=255)
gTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGatcatc > 1:1172789/1‑93 (MQ=255)
gTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGatcatc < 2:2792086/93‑1 (MQ=255)
gTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGatcatc > 1:3137161/1‑93 (MQ=255)
gTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGatcatc < 2:6923477/93‑1 (MQ=255)
gTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGatcatc < 2:7169533/93‑1 (MQ=255)
gAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTc < 2:2845184/93‑1 (MQ=255)
gAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTc < 2:2912354/93‑1 (MQ=255)
gcgccTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGc > 1:205922/4‑93 (MQ=255)
gccTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTa > 2:3957586/2‑93 (MQ=255)
aCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCCGTTTGCGATCATCCTCGCTa > 1:5400581/1‑93 (MQ=255)
cTGCCGCCCTCCCGCCCGGTTGTTGCGCTAATCCGGCTTTTTGC‑GAAAACGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGa < 1:2626819/93‑1 (MQ=255)
cTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAg > 1:6234312/1‑93 (MQ=255)
cTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAg > 2:320360/1‑93 (MQ=255)
tGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTATGa > 1:6165716/1‑93 (MQ=255)
tGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGa < 2:5019542/93‑1 (MQ=255)
gACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGAt > 2:3477688/1‑93 (MQ=255)
gACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGAt > 1:5138344/1‑93 (MQ=255)
gACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGAt > 2:79875/1‑93 (MQ=255)
aCGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATg < 1:5390004/93‑1 (MQ=255)
aCGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATg > 2:6269507/1‑93 (MQ=255)
aCGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATg < 2:5838395/93‑1 (MQ=255)
cGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATgc < 2:1286914/93‑1 (MQ=255)
tCCTCGCGGCCCGATGGTGCGCTTCTCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATgcgc < 2:4783454/93‑1 (MQ=255)
tCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATgcgc > 2:4370711/1‑93 (MQ=255)
tCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATgcgc > 1:6375707/1‑93 (MQ=255)
tCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATgcgc > 1:6948059/1‑93 (MQ=255)
tCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATgcgc > 1:3404346/1‑93 (MQ=255)
tCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATgcgc > 2:5747744/1‑93 (MQ=255)
tCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATgcgc < 1:1764894/93‑1 (MQ=255)
tCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATgcgc < 1:4505446/93‑1 (MQ=255)
ccTCGCGTCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGcc < 1:609041/93‑1 (MQ=255)
ccTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGcc < 1:4325613/93‑1 (MQ=255)
cTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCa > 2:224843/1‑93 (MQ=255)
cTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCa < 1:1047558/93‑1 (MQ=255)
cTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCa < 2:2541371/93‑1 (MQ=255)
tCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAg > 2:4554294/1‑93 (MQ=255)
tCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGCCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAg > 1:2509166/1‑93 (MQ=255)
gcgGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCa < 1:5487531/93‑1 (MQ=255)
gcgGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCa < 2:2954891/93‑1 (MQ=255)
gCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTg < 2:4489930/93‑1 (MQ=255)
cccGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTgg < 1:4128013/93‑1 (MQ=255)
ccGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGc > 1:506537/1‑93 (MQ=255)
ccGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGc > 1:1032203/1‑93 (MQ=255)
cGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCg > 2:1679097/1‑93 (MQ=255)
cGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGACg > 2:3868114/1‑93 (MQ=255)
gATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGt > 1:958753/1‑93 (MQ=255)
gATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGt < 1:5867087/93‑1 (MQ=255)
aTGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTa > 2:2411724/1‑93 (MQ=255)
tGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAg < 2:558260/93‑1 (MQ=255)
ggTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAgt < 1:4919340/93‑1 (MQ=255)
gTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCATGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAgtg < 2:6160635/93‑1 (MQ=255)
gcgcTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTc > 1:3298339/1‑93 (MQ=255)
gcTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCAt < 2:1567742/93‑1 (MQ=255)
cTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATc < 1:5553662/93‑1 (MQ=255)
cTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATc < 2:2755887/93‑1 (MQ=255)
ttATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCt > 1:2250162/1‑93 (MQ=255)
ttATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCt > 2:2615476/1‑93 (MQ=255)
aTCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATCCGCCAGCACTGGCGTAGTGTCATCTTc < 2:6420621/93‑1 (MQ=255)
cAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTg > 2:1024098/1‑93 (MQ=255)
aGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGc > 1:7237170/1‑93 (MQ=255)
ctTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACg > 2:932509/1‑93 (MQ=255)
tttGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGc > 2:6596826/1‑93 (MQ=255)
tGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCAt < 1:2994606/93‑1 (MQ=255)
gCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATc > 1:2763260/1‑93 (MQ=255)
cGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATcc < 2:5351805/93‑1 (MQ=255)
ggAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCt < 1:7064107/93‑1 (MQ=255)
gAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTg > 1:2364974/1‑93 (MQ=255)
cGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCcaca > 2:599484/1‑93 (MQ=255)
ggCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAg > 2:1412838/1‑93 (MQ=255)
gCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGc > 2:1772153/1‑93 (MQ=255)
aaTCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTc > 1:4783655/1‑93 (MQ=255)
aTCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCa > 2:5022026/1‑93 (MQ=255)
aTCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCa > 2:1981866/1‑93 (MQ=255)
aTCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCa < 1:144070/93‑1 (MQ=255)
tCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCAc > 2:4090003/1‑93 (MQ=255)
tCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCAc > 2:3794397/1‑93 (MQ=255)
aGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGc > 1:4179930/1‑93 (MQ=255)
cGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCa < 2:2189146/93‑1 (MQ=255)
gTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCAc > 1:3720217/1‑93 (MQ=255)
gTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCAc > 2:6514135/1‑93 (MQ=255)
ttAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACt > 1:3776269/1‑93 (MQ=255)
ttAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACt > 2:2671931/1‑93 (MQ=255)
ttAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACt > 2:3087742/1‑93 (MQ=255)
tAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTg > 1:1505255/1‑93 (MQ=255)
aGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGt < 2:468655/93‑1 (MQ=255)
|
ATGCGGCATCAGATGGTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGT > NC_000913/3195753‑3195933
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGATGCGGCATCAGATGGTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGTTCCG > NC_000913/3195751‑3195937
|
AGATGCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCG > SRR4302542.6122320/1‑94 (MQ=60)
AGATGCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCG > SRR4302542.3777064/1‑94 (MQ=60)
GATGCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGC > SRR4302542.1564626/1‑94 (MQ=60)
ATGCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCC > SRR4302542.5496370/1‑94 (MQ=60)
ATGCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCC > SRR4302542.7402304/1‑94 (MQ=60)
ATGCGGCATCAGATGGTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACC < SRR4302542.3190054/94‑1 (MQ=60)
TGCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCT < SRR4302542.3859462/94‑1 (MQ=60)
GCGGCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTG < SRR4302542.4950698/94‑1 (MQ=60)
CGGCATCAGATGGTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGT > SRR4302542.6819498/1‑94 (MQ=60)
GCATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTT < SRR4302542.5343849/94‑1 (MQ=60)
CATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTG > SRR4302542.5753977/1‑94 (MQ=60)
CATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTG < SRR4302542.6470607/94‑1 (MQ=60)
ATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGC < SRR4302542.1439831/94‑1 (MQ=60)
ATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGC > SRR4302542.4135437/1‑94 (MQ=60)
ATCAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGC > SRR4302542.5446939/1‑94 (MQ=60)
TCAGATGGTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCG > SRR4302542.6838872/1‑94 (MQ=60)
CAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGA > SRR4302542.5707443/1‑94 (MQ=60)
CAGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGA < SRR4302542.853931/94‑1 (MQ=60)
AGATGGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGAT > SRR4302542.4170872/1‑94 (MQ=60)
GGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATC > SRR4302542.1182927/1‑94 (MQ=60)
GGTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATC > SRR4302542.3166980/1‑94 (MQ=60)
GTCGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATGATCC < SRR4302542.7041981/94‑1 (MQ=60)
CGAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTC < SRR4302542.3043636/94‑1 (MQ=60)
GAGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCG > SRR4302542.6309538/1‑94 (MQ=60)
AGCGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGC > SRR4302542.207670/1‑94 (MQ=60)
CGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTA > SRR4302542.1493077/1‑94 (MQ=60)
CGCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTA > SRR4302542.2045996/1‑94 (MQ=60)
CACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCCGTTTGCGATCATCCTCGCTA > SRR4302542.5453046/1‑94 (MQ=60)
GCCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAA < SRR4302542.6821484/94‑1 (MQ=60)
CCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAG > SRR4302542.6295696/1‑94 (MQ=60)
CCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAG > SRR4302542.3426121/1‑94 (MQ=60)
CTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTATGA > SRR4302542.6225448/1‑94 (MQ=60)
CTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGA > SRR4302542.2551424/1‑94 (MQ=60)
ctgccgccctcccgcccggttgttgcgctaatccggctttttgcgaaaaCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGAT < SRR4302542.2652196/45‑1 (MQ=60)
TGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGAT > SRR4302542.5188289/1‑94 (MQ=60)
TGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGAT > SRR4302542.5134662/1‑94 (MQ=60)
ACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGC < SRR4302542.5442352/94‑1 (MQ=60)
GTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGC > SRR4302542.3436263/1‑94 (MQ=60)
GTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGC > SRR4302542.1054883/1‑94 (MQ=60)
GTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGC > SRR4302542.7016328/1‑94 (MQ=60)
GTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGC > SRR4302542.6438487/1‑94 (MQ=60)
TCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCC > SRR4302542.3139683/1‑94 (MQ=60)
TCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCC < SRR4302542.1780203/94‑1 (MQ=60)
TCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCC < SRR4302542.4549614/94‑1 (MQ=60)
CCTCGCGTCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCA < SRR4302542.614283/94‑1 (MQ=60)
CCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCA < SRR4302542.4368144/94‑1 (MQ=60)
CCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCA > SRR4302542.4452735/1‑94 (MQ=60)
CTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAG > SRR4302542.2552338/1‑94 (MQ=60)
CTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAG < SRR4302542.7091232/94‑1 (MQ=60)
CTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAG > SRR4302542.861480/1‑94 (MQ=60)
CTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAG < SRR4302542.1056542/94‑1 (MQ=60)
CTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGCCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAG > SRR4302542.2533513/1‑94 (MQ=60)
GCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCAC < SRR4302542.5540836/94‑1 (MQ=60)
CGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACT > SRR4302542.7479727/1‑94 (MQ=60)
GCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGG < SRR4302542.5565644/94‑1 (MQ=60)
CCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGC < SRR4302542.4168677/94‑1 (MQ=60)
CCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGC > SRR4302542.1041087/1‑94 (MQ=60)
CCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGC > SRR4302542.510935/1‑94 (MQ=60)
CCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCG > SRR4302542.2181480/1‑94 (MQ=60)
CGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGT > SRR4302542.966987/1‑94 (MQ=60)
CGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGT < SRR4302542.1495251/94‑1 (MQ=60)
GATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTA < SRR4302542.5923965/94‑1 (MQ=60)
ATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAG < SRR4302542.4389309/94‑1 (MQ=60)
GGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTG < SRR4302542.6253175/94‑1 (MQ=60)
GGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTG < SRR4302542.4967171/94‑1 (MQ=60)
TGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTC > SRR4302542.3329453/1‑94 (MQ=60)
TGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTC < SRR4302542.6193295/94‑1 (MQ=60)
GCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCA < SRR4302542.3721764/94‑1 (MQ=60)
CTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCT > SRR4302542.2269509/1‑94 (MQ=60)
CTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCT < SRR4302542.3827121/94‑1 (MQ=60)
CTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCT < SRR4302542.7374914/94‑1 (MQ=60)
CTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCT < SRR4302542.6007328/94‑1 (MQ=60)
CTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCT < SRR4302542.5607622/94‑1 (MQ=60)
CTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCT > SRR4302542.578685/1‑94 (MQ=60)
TATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTC > SRR4302542.1779871/1‑94 (MQ=60)
ATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCC > SRR4302542.4990974/1‑94 (MQ=60)
CAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGC > SRR4302542.7308159/1‑94 (MQ=60)
CAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGC > SRR4302542.2715464/1‑94 (MQ=60)
AGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCA < SRR4302542.106732/94‑1 (MQ=60)
GCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAA > SRR4302542.3745788/1‑94 (MQ=60)
GCTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAA > SRR4302542.5877062/1‑94 (MQ=60)
CTCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAAC > SRR4302542.287428/1‑94 (MQ=60)
CTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAAC < SRR4302542.4696306/94‑1 (MQ=60)
TCTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACG > SRR4302542.3761745/1‑94 (MQ=60)
CTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGC > SRR4302542.2307597/1‑94 (MQ=60)
CTTTGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGCGTCATCTTCCTGCAACGC > SRR4302542.5047503/1‑94 (MQ=60)
TTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCAT < SRR4302542.4366564/94‑1 (MQ=60)
TGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATC > SRR4302542.6912509/1‑94 (MQ=60)
TGCGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATC > SRR4302542.2789889/1‑94 (MQ=60)
TGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATC < SRR4302542.3023262/94‑1 (MQ=60)
CGGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCT < SRR4302542.6459770/94‑1 (MQ=60)
GGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTG < SRR4302542.7133438/94‑1 (MQ=60)
GGAAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTG > SRR4302542.2385428/1‑94 (MQ=60)
AAATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCC > SRR4302542.5473434/1‑94 (MQ=60)
AATCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCA > SRR4302542.2236976/1‑94 (MQ=60)
TCGGCAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACA < SRR4302542.7163781/94‑1 (MQ=60)
CAATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTC > SRR4302542.4830283/1‑94 (MQ=60)
AATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCA < SRR4302542.3912209/94‑1 (MQ=60)
AATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCA > SRR4302542.7056958/1‑94 (MQ=60)
ATCAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCAC < SRR4302542.145273/94‑1 (MQ=60)
TCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACG > SRR4302542.7026084/1‑94 (MQ=60)
CAGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGC > SRR4302542.4221148/1‑94 (MQ=60)
AGCGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGTCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCC > SRR4302542.6284636/1‑94 (MQ=60)
CGTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCAC > SRR4302542.3757024/1‑94 (MQ=60)
GTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACT > SRR4302542.3813631/1‑94 (MQ=60)
GTTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACT > SRR4302542.2510748/1‑94 (MQ=60)
TTAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTG > SRR4302542.1518277/1‑94 (MQ=60)
TAGCGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGT > SRR4302542.808929/1‑94 (MQ=60)
CGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGTTCC > SRR4302542.3861984/1‑94 (MQ=60)
CGCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGTTCC < SRR4302542.3192256/94‑1 (MQ=60)
GCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGTTCCG < SRR4302542.5694701/94‑1 (MQ=60)
GCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGTTCCG > SRR4302542.2952591/1‑94 (MQ=60)
GCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGTTCCG > SRR4302542.2439945/1‑94 (MQ=60)
GCCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGTTCCG > SRR4302542.2549303/1‑94 (MQ=60)
ACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGTTCCG > SRR4302542.3857398/1‑94 (MQ=60)
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AGATGCGGCATCAGATGGTCGAGCACCTGACGTCCTCGCGGCCCGATGGTGCGCTTATCCAGCTCTTTGCGGAAATCGGCAATCAGCGTTAGCACCTGTTTGCGATCATCCTCGCTAAGATGCGCCAGCACTGGCGTAGTGTCATCTTCCTGCAACGCATCCTGCCACAGCTCACGCCACTGTTCCG > NC_000913/3195751‑3195937
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
